BAC Information

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BAC

Clone NameMSMg01-539E10
Chromosome16 (Build37)
Map Location 40,869,994 - 40,870,274
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539E10.T7 (MSMg01no539_e10.b1)MSMg01-539E10.TJ (MSMg01no539_e10.g1)
ACCAG605806AG605807
length808751
length of high quality
(start - end)
---284 (81 - 364)
definitionCHROMAT_FILE: MSMg01no539_e10.b1 PHD_FILE: MSMg01no539_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:10 2005CHROMAT_FILE: MSMg01no539_e10.g1 PHD_FILE: MSMg01no539_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCACGCGATG
CTGCGGNANTTNNCTTTTNTTTTAAATTTTTTTTTTTCTCCCCCCCCCCC
CGCCCCGGCCCCCTTTTTTTTAAAAAAAAAATATTTCGGTGTTGCTTTTT
TGGGTCCTCCTTTTCTTTTTTCTTTTTTCTCTTTTATAATGAAAAAAAGA
AGAGCGGGCGGCCTTTCCCCCCCTCTCCCCCCCCCCCCCTCTCTCTTCAT
TTTTTTTCTCCTCCCCCCCCCTCCCAAATATAACTTATTTTTCTTTTTTT
TGCGCGGGCGCGGGCCCTCCATCCTCTCTCTTCTCTCCTCTCTCTCTTCC
CTCCCTTTTTTTCTGTTTTTTTTTTTTTGACCCTCCCCTCCCCCCCTCCC
TCTCTTTTTTTTTTTCTGTGGGTGGGGGGCTCGTCTTTCGATCTTCCTCT
CTCTCTTTTTTTTTTTTTCTTTTCTTTTTCTCTCTTCCCCCCCCTCCCTC
TTACGAAAAAAAACAAAGGTGCTTTTTCCTCCTCTGCCTTCGGCTCCTTC
TTCGTCCTCCCCTCCACCCCTCCATCCTCCATCTCCCATCTCCCCTCCCT
CTCCTCTTCCCTTCTTTTTCTTTTCGGGGCCGCCCCTCCCCCTTTTTCCT
TTTACTCTCCCCTTCAAACCTCCATGTCTCTCTTTTTTTATTGTTTCCTT
TTCCCTTCCGCCCCTCTACTCCCCCCTACCTCCGCTTTCTTTCTTTTGTT
ACATGGATGCTTCTTTTTTCTTCTTTCTCTCCTTTCCTCTCTCTTTTTTC
TTTTTTTT
CTTCCAATGCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGGAATAAATTTTCTCTT
ATATTTCTTACAGAACCAGGTAGTATTGAAATGGAATTCAGTAAATTCAG
TAAAATATATTAGTTTTCTTTTGATCCACCATGGAATTATTATTATTATG
TTTTCTGTGTTTAGTTATGAAGACCAACCAAAGACAACACGTTTGAATTT
AATATCTGTGAAAGAACCATTAGGAAGCTTGCTCCTGTTTCTGTGTATGT
ATGAGATTGCCCAGGGTGTCCGGGCAGGGCTTTGGGGAATATAACTGATG
CCCTGTAAAAACTAAATAAGCTAACTAGGCTGTATCCTGGCCAATTTTTC
CCATCACTATCAGAATAAATAGTTGCATTTGTATAAAAACCAAGTTTTCC
AAAGGAAATAATTTCATGTAGAATATTTACTTTTAAAATCTCCCTTCATT
CATACTCACACTTGTTTATAATATTTAGTGTGAAATAACACGGCAAATTG
CTGATATTTAGCCTTAATCTCTGTTTTTAGAATAATGATGTGATTAATTT
AATGCACTTGTCCCTGATAACACTGTTCTCGAATACCTAAACTCCCTGTA
CTAAATTTTGATAATGACAGAGGTTATGATGGTTCGATATTATTATGCGT
TTATTACTATGTTTAGCTTTGCACTATTTAGGTTTAAGGTGTTATATGTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_e10.g1 MSMg01no539_e10.g1 CHROMAT_FILE:
MSMg01no539_e10.g1 PHD_FILE: MSMg01no539_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:10 2005
         (284 letters)



>mm_chr16_40869794_40870474
          Length = 681

 Score =  476 bits (246), Expect = e-139
 Identities = 274/284 (96%), Gaps = 3/284 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggaataaattttctcttatatttcttacagaaccaggtagtattgaaatggaattca 60
           |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 481 ttaggaataaattttctcttatgtttcttacagagccaggtagtattgaaatggaattca 422

                                                                       
Query: 61  gtaaattcagtaaaatatattagttttcttttgatccaccatggaattattattattatg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 421 gtaaattcagtaaaatatattagttttctcttgatccaccatggaattattattattatg 362

                                                                       
Query: 121 ttttctgtgtttagttatgaagaccaaccaaagacaacacgtttgaatttaatatctgtg 180
           ||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||
Sbjct: 361 ttttctgtgtttagttatgaagaccaaccaaagaca--acgtttgaatttaaaatctgtg 304

                                                                       
Query: 181 aaagaaccattaggaagcttgctcctgtttctgtgtatgtatgagattgcccagggtgtc 240
           ||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 303 aaagaaccagtaggaagcttgttcctgtttctgtgtatgtatgagattgccca-ggtgtc 245

                                                       
Query: 241 cgggcagggctttggggaatataactgatgccctgtaaaaacta 284
           ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 244 cgggcagggctttggggaatagaactgatgccctgtaaaaacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 681
Length adjustment: 9
Effective length of query: 275
Effective length of database: 672
Effective search space:   184800
Effective search space used:   184800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)