NNNNCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTAATTTTTCACAACAACAGTTTAGATAATGTTTCTTA
GGAGCCTCACTTTTTAATGCAAAGTACAGTTCTAAGGATGAATGTGAGGT
GGATATTTCCAGATCATGTCAGTAGTTCTATGGATTTATAGACACTTATT
TTCCTGGAATATAATGAATTCAATTAGTGGTTTCTGTTATTTCTCTAAAG
ATACCATGACTGATTTTATTCTTGACTGAAACTGGTGCATTTTTAGTCCC
AAGCTCTGCCTTGATCAGGTTTTCTATTGCTGAGAAGAGACATGGCAACT
CTTATGAAGGGAAACATTTAATTAAGGCTAGCTTACAGTTTCAGAGGTTT
GGTCTGTGAAGGTGTTGGGAGGAAACATGGTGGTTTGCAGACAGAAAAGG
AACTAAGAGTTCTACATCTTAATCCACAGGCAACAGAAGCGACTTTGGCA
CACTGGGTGTAGATTGAGCACATGGGATTCAAACCAGCCTGGCACATTTC
CTTCAACAAGGTCACACCTATTCTACCTAGGTCACACTCCTAATAGTGCC
ACTCCCTATAGACCAAGCATTCAGACATTATGGGGGGGGGGGCGGAATGT
TCCTATTCAAAGGACTAGAAGCACTTTATGAAAATTTTTGTCCAAATGAT
TCGAGATTGCCATTTCCCCCTCACCTTTATTTCAGCCTCTCTTTCTCCCA
TATCCTTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATACTTTGATCAAGGAAG
AAACAAAGAAAATAATAAAAGACTTTTTTTGAATTTAATGAAAATGAAAG
CACATCATAACAAAACTTATGGGAAACAATGAAAGCAGTGCTAAGAGGAA
AACTCCTAGCTCTAATTGCCACCATGAAGAAACTGGGGAGATCCTACATT
AGCAGCTTGACAGCACACCTGAAAGCTCTAGAACTAAAAGAAGCAAATGC
ACCCAAGAAGAGTAGACAGTAGGAAATATTCAAATTCAGGACTGAAATCA
AAGAAGAAACAAACACACCAAAAAAAAAAAAACAATAACAGAAACAAAAA
ACAAACAAACAAACAAAAAATTATAAAAAGAATCAAGAAAACTAGGAACA
GGCTCTTTGATAAAATCAGTAAGTTAGATAAACCCTTAGCCAGACTAGCC
AAAGGGCGTAGAGCCCATTTCCAAATTAATAAAATAAAAAATGATAAGGG
AGACATAGCAATGGAAATAGAGGAAATTCAAACAATCCTACTACAAAAGC
CTATTCTCAACATAATTGGAAAACTACATCAAATGAACAATTTTCTAGAC
ATATACCAGGTGCCAAAGTAAAAACAGGTTCAGATAAACCATCTAAACAG
TCCCAAAAGCCCTAAAGAAATATCAGCACTCATTAAAGTTCTCCCAACCA
AAGATAAGCCTAA

Query= MSMg01no539_f08.b1 MSMg01no539_f08.b1 CHROMAT_FILE:
MSMg01no539_f08.b1 PHD_FILE: MSMg01no539_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:15 2005
         (648 letters)



>mm_chr16_69512394_69513441
          Length = 1048

 Score =  832 bits (430), Expect = 0.0
 Identities = 450/460 (97%), Gaps = 6/460 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaatttttcacaacaacagtttagataatgtttcttaggagcctcacttttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaattcagtaatttttcacaacaacagtttagataatgtttcttaggagcctcacttttt 396

                                                                       
Query: 65  aatgcaaagtacagttctaaggatgaatgtgaggtggatatttccagatcatgtcagtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aatgcaaagtacagttctaaggatgaatgtgaggtggatatttccagatcatgtcagtag 336

                                                                       
Query: 125 ttctatggatttatagacacttattttcctggaatataatgaattcaattagtggtttct 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 335 ttctatggatttatagacacttattttcctggaatataacgaattcaattagtggtttct 276

                                                                       
Query: 185 gttatttctctaaagataccatgactgattttattcttgactgaaactggtgcattttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gttatttctctaaagataccatgactgattttattcttgactgaaactggtgcattttta 216

                                                                       
Query: 245 gtcccaagctctgccttgatcaggttttctattgctgagaagagacatggcaactcttat 304
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gtcacaagctctgccttgatcaggttttctattgctgagaagagacatggcaactcttat 156

                                                                       
Query: 305 gaagggaaacatttaattaaggctagcttacagtttcagaggtttggtctgtgaaggtgt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 155 gaagggaaacatttaattaaggctagcttacagtttcagaggtttggtctgtgagggtgt 96

                                                                       
Query: 365 tgggaggaaacatggtggtttgcagacagaaaaggaactaagagttctacatcttaatcc 424
           ||||| ||||||||||||||||||||||||||||||||||||||||||      ||||||
Sbjct: 95  tgggaagaaacatggtggtttgcagacagaaaaggaactaagagttct------taatcc 42

                                                   
Query: 425 acaggcaacagaagcgactttggcacactgggtgtagatt 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  acaggcaacagaagcgactttggcacactgggtgtagatt 2


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)