BAC Information

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BAC

Clone NameMSMg01-540C21
Chromosome16 (Build37)
Map Location 40,935,333 - 40,935,489
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540C21.T7 (MSMg01no540_c21.b1)MSMg01-540C21.TJ (MSMg01no540_c21.g1)
ACCAG606492AG606493
length700741
length of high quality
(start - end)
161 (67 - 227)573 (74 - 646)
definitionCHROMAT_FILE: MSMg01no540_c21.b1 PHD_FILE: MSMg01no540_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:22 2005CHROMAT_FILE: MSMg01no540_c21.g1 PHD_FILE: MSMg01no540_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTGAAATTAATTTTATNACCCCTTXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCGCGGATTCACTCTAAATTAATACTAATGAAAAT
ATAGTACCCTGTGTTAAACACTATTAGTATTATTCACATAAGTAAACAGG
CATATAGAAGAGTACTGAATGTGTTCAATATGAATCCATATTTCTTCCCT
ATGTTAATGATTCACATTTTAAGAATGAAACCAACAGAAGTCATTTCCCT
GATCTATGNCTCTAAATTTAAATAAAAGACTAGGAATGGGTAAAAAAAAA
AAAATCCCTATTTACCTTATTTCCGGAAAAAAACTTTCTAGGTTTTAAAA
GGCGAAAAAATTTTTAAAAAAAAAAGTCCCAGGCCTCTAAAAAGGGTTCC
CTTATTCCCAAAAAAAAAACCCCGGGAAAAAAAAACGGCGGCCCCCCCAA
AAATATTTCAATAGGGGGGGGGGATATTTTTCCCCACCGCGGTGGGGTGG
GTTTTCCACCCCCCCCTGGGGGGGGAGGGAGAAAAAAAAAATACCAATTT
TATTTGTTTTGNGCTTTTTGTTTTTTTTTTTTTTTTTTTTTNNTGTTCTA
TAANNAATATATAATAAAAATANATANTNNAATTTTTTTTTTTTCTTNNT
TATATATCCCCCTTCCCCCGCGCCAAAAAAAAAAAAAAAAAAAAAAAAAA

ACATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTA
AACACATGAAACTCCAGGAGAATGAAAGACTGAGTGTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_c21.b1 MSMg01no540_c21.b1 CHROMAT_FILE:
MSMg01no540_c21.b1 PHD_FILE: MSMg01no540_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:22 2005
         (161 letters)



>mm_chr16_40935128_40935689
          Length = 562

 Score =  296 bits (153), Expect = 5e-85
 Identities = 156/157 (99%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   attcactctaaatt-aatactaatgaaaatatagtaccctgtgttaaacactattagtat 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 attcactctaaattcaatactaatgaaaatatagtaccctgtgttaaacactattagtat 265

                                                                       
Query: 65  tattcacataagtaaacaggcatatagaagagtactgaatgtgttcaatatgaatccata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tattcacataagtaaacaggcatatagaagagtactgaatgtgttcaatatgaatccata 325

                                                
Query: 125 tttcttccctatgttaatgattcacattttaagaatg 161
           |||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttcttccctatgttaatgattcacattttaagaatg 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 562
Length adjustment: 8
Effective length of query: 153
Effective length of database: 554
Effective search space:    84762
Effective search space used:    84762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)