BAC Information

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BAC

Clone NameMSMg01-542E03
Chromosome16 (Build37)
Map Location 38,945,399 - 38,946,006
singlet/doubletsinglet
Overlap geneIgsf11
Upstream geneGpr156, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542E03.T7 (MSMg01no542_e03.b1)MSMg01-542E03.TJ (MSMg01no542_e03.g1)
ACCAG608076AG608077
length761761
length of high quality
(start - end)		371 (45 - 415)608 (72 - 679)
definitionCHROMAT_FILE: MSMg01no542_e03.b1 PHD_FILE: MSMg01no542_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:14 2005CHROMAT_FILE: MSMg01no542_e03.g1 PHD_FILE: MSMg01no542_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCTGTACTAGGGCATATAATCTTCGCAAGACCAAGGGCATCTCCT
CCCATTGATGGCTGACTAGGCCATCCTCTGCTACATATGCAACTAGAGAC
AAAAGCTCTGGGGGGAGAGGTACTGGTTAGTTCATATTGTTGTTCCTCCT
ATAGGGTTTCAGACCCCTTTAGCTCCTTGGGTACTTCCTCTAGCTCTTTC
ATTGGGGGTCCTGTGTTCCATCCAATAGATGACTGTGAGCATCCACTTCT
GTATTTGCCAGGCACTGGCATAGACTCACAAGAGATAGCTAAGATCTTGC
TGGCATATGGAATAGTGTCTGGGTTTGGTGGTTGTTTATGGGATGGGTGG
ATGTTTATGGGATGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACATCTTTTTTCTCTGCTGCCAAAGGCCA
AGAAGGCACAGACAGAGAAATACCAACTATCCTCCATCAGGCTAATAATT
AATGAGACCTTTCTAACAATGAATGGGCAGCACAATGCCCTTCTGTGTTG
CATGGGCATATGACTATTTACATCACGCGAACTGGGCTTGAGAACTTTTA
CAAGCTTACACAGCTCAGTAACGCATTAACCGGGAATCACGTGTGCGACC
CATGGCGGTTCCTCACCTGGTAGAGGCAGACCGCTTAGTCAAACTTTGAA
GCACAGTTCAGTTGAACAAATCGGCCAACATTAGTGGAGTGGGAATTGAG
AGACAGTGTGAAAAACAGAAGAGATGGAAGTGAGGTCGCTACAATGTACT
GAGAGACCGGGCAAAAGCCAAAGATAAGGTTCATACTATACACTAAAGGG
CAGCACACAATATAAACGGGAGTACACAAAGATCACAATTACGGAACTAA
AGAAAAGCAAGACAAGAAGACCCCATGGATCCCTGGAACAAAGGAGACAT
TTAAAACAACAATAGAATCGATTTAGTCTGGATTTCAAATAAGGGTGTGC
GAGAGCTGGTCAGTCAACTGCAAACCCTGGGCTAAACTTGGTTTCCCAAT
GCCTCCCACCACAGNCAAACACTGTTTCCAAGTCCCAGGAGAGAGCACAA
ACAGCAGGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_e03.g1 MSMg01no542_e03.g1 CHROMAT_FILE:
MSMg01no542_e03.g1 PHD_FILE: MSMg01no542_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:14 2005
         (608 letters)



>mm_chr16_38945199_38946206
          Length = 1008

 Score = 1176 bits (608), Expect = 0.0
 Identities = 608/608 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatcttttttctctgctgccaaaggccaagaaggcacagacagagaaataccaactatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 acatcttttttctctgctgccaaaggccaagaaggcacagacagagaaataccaactatc 749

                                                                       
Query: 61  ctccatcaggctaataattaatgagacctttctaacaatgaatgggcagcacaatgccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ctccatcaggctaataattaatgagacctttctaacaatgaatgggcagcacaatgccct 689

                                                                       
Query: 121 tctgtgttgcatgggcatatgactatttacatcacgcgaactgggcttgagaacttttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tctgtgttgcatgggcatatgactatttacatcacgcgaactgggcttgagaacttttac 629

                                                                       
Query: 181 aagcttacacagctcagtaacgcattaaccgggaatcacgtgtgcgacccatggcggttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aagcttacacagctcagtaacgcattaaccgggaatcacgtgtgcgacccatggcggttc 569

                                                                       
Query: 241 ctcacctggtagaggcagaccgcttagtcaaactttgaagcacagttcagttgaacaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctcacctggtagaggcagaccgcttagtcaaactttgaagcacagttcagttgaacaaat 509

                                                                       
Query: 301 cggccaacattagtggagtgggaattgagagacagtgtgaaaaacagaagagatggaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cggccaacattagtggagtgggaattgagagacagtgtgaaaaacagaagagatggaagt 449

                                                                       
Query: 361 gaggtcgctacaatgtactgagagaccgggcaaaagccaaagataaggttcatactatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaggtcgctacaatgtactgagagaccgggcaaaagccaaagataaggttcatactatac 389

                                                                       
Query: 421 actaaagggcagcacacaatataaacgggagtacacaaagatcacaattacggaactaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actaaagggcagcacacaatataaacgggagtacacaaagatcacaattacggaactaaa 329

                                                                       
Query: 481 gaaaagcaagacaagaagaccccatggatccctggaacaaaggagacatttaaaacaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaaaagcaagacaagaagaccccatggatccctggaacaaaggagacatttaaaacaaca 269

                                                                       
Query: 541 atagaatcgatttagtctggatttcaaataagggtgtgcgagagctggtcagtcaactgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atagaatcgatttagtctggatttcaaataagggtgtgcgagagctggtcagtcaactgc 209

                   
Query: 601 aaaccctg 608
           ||||||||
Sbjct: 208 aaaccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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