Query= MSMg01no544_k23.b1 MSMg01no544_k23.b1 CHROMAT_FILE:
MSMg01no544_k23.b1 PHD_FILE: MSMg01no544_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:26 2005
(544 letters)
>mm_chr16_61989320_61990261
Length = 942
Score = 977 bits (505), Expect = 0.0
Identities = 531/540 (98%), Gaps = 2/540 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttctgattcattttgctgaaaaaacgccccttacgtatactgaataatgcaa 63
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 204 ggaattctttctgattcattttgctgaaaaaatgcccctgacgtatactgaataatgcaa 263
Query: 64 tgttagtgtaaatatgagagaaaaatgatcatctgtatttacaattcatgaaataataga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgttagtgtaaatatgagagaaaaatgatcatctgtatttacaattcatgaaataataga 323
Query: 124 ggcaatatcaaataaatgacttctcaaatgtttgtgacaacccaatattatacaggcagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggcaatatcaaataaatgacttctcaaatgtttgtgacaacccaatattatacaggcagt 383
Query: 184 ttgaaggaagtttttgattagtaataattgggtcttgagaatagcaaaaatagcatgtat 243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgaaggaagtttttgattaataataattgggtcttgagaatagcaaaaatagcatgtat 443
Query: 244 cagaggtcactgcaacagcgaactccctggaagaaaattaaatacagccaagcatctgcc 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 cagaggtcactgcaacagcgaactcccaggaagaaaattaaatacagccaagcatctgcc 503
Query: 304 cacacaatttaccgcctgccaatctatagaagaaactttttcccacagattcctgtaaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacacaatttaccgcctgccaatctatagaagaaactttttcccacagattcctgtaaag 563
Query: 364 tcatctggctgtagcttacttttctatagtgcatcaggcttaatcttgaaaacacagaac 423
||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 tcatctgactgtagctta-ttttctatagtgcatcaggcttaatcttgaaaacacggaac 622
Query: 424 ctggcacctctttaatccttgtaacagacctgggaaaacaacctcaaaaaacaaaaaaga 483
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 623 ctggcacctctttaatccttgtaacagacctgggaaaacaacctcaaaaa-caaaaaaga 681
Query: 484 ttgtttgtttgtttgtttgcttgcttgcttantgtgtgtgtgtgtgtgtgtgtgtgtgtg 543
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 682 ttgtttgtttgtttgtttgcttgcttgcttagtgtgtgtgtgtgtgtgtgtgtgtgtgtg 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 942
Length adjustment: 10
Effective length of query: 534
Effective length of database: 932
Effective search space: 497688
Effective search space used: 497688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_k23.g1 MSMg01no544_k23.g1 CHROMAT_FILE:
MSMg01no544_k23.g1 PHD_FILE: MSMg01no544_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:26 2005
(594 letters)
>mm_chr16_62000915_62001908
Length = 994
Score = 723 bits (374), Expect = 0.0
Identities = 449/516 (87%), Gaps = 65/516 (12%)
Strand = Plus / Minus
Query: 1 atgtttgtaatgcatatgtgttaaaagctggttctcagagtgacactattgcatgacagt 60
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 451 atgtttgtaatgcacatgtgttaaaagctggttctcagagcgacactattgcatgacagt 392
Query: 61 agaagttttatgatatggaactcaagaggtttctgataggctgttgcagttgaactctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agaagttttatgatatggaactcaagaggtttctgataggctgttgcagttgaactctag 332
Query: 121 aagaagcactcatccatacccattgttttgatttgttttctctgcttccacatttgactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aagaagcactcatccatacccattgttttgatttgttttctctgcttccacatttgactg 272
Query: 181 cctacattgatatgcttttcccaacagaatatcatcatatcttctctcaaaaatgctcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cctacattgatatgcttttcccaacagaatatcatcatatcttctctcaaaaatgctcaa 212
Query: 241 aacaatagagttgttcttgtcagggttctctagagaagcagaaattattgcatgcatagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aacaatagagttgttcttgtcagggttctctagagaagcagaaattattgcatgcatagg 152
Query: 301 gtgtttatatttattttattttactttattttattttatttattttattttattttattt 360
||||||||| |||||||
Sbjct: 151 gtgtttata--------------------------------------------tttattt 136
Query: 361 tattttattttattttattttattttattttattttatgttattttattttattttatgt 420
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tattttattttattttattttattttattttattttatgtt------------------- 95
Query: 421 tnattttattttttgagacagggtttctctgtgtagccctggatgtcctggaactcactc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 --attttattttttgagacagggtttctctgtgtagccctggatgtcctggaactcactc 37
Query: 481 tgtagaccaggctgtcctcaaactaagaaatccacc 516
||||||||||||||||||||||||||||||||||||
Sbjct: 36 tgtagaccaggctgtcctcaaactaagaaatccacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
