BAC Information

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BAC

Clone NameMSMg01-546E07
Chromosome16 (Build37)
Map Location 64,480,902 - 64,481,320
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540, Ckt2
Downstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546E07.T7 (MSMg01no546_e07.b1)MSMg01-546E07.TJ (MSMg01no546_e07.g1)
ACCAG611133AG611134
length717736
length of high quality
(start - end)
578 (44 - 621)389 (72 - 460)
definitionCHROMAT_FILE: MSMg01no546_e07.b1 PHD_FILE: MSMg01no546_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:30 2005CHROMAT_FILE: MSMg01no546_e07.g1 PHD_FILE: MSMg01no546_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGTTTTCATTATATATTAGGTTGGTAGTGGTAGGGGGATGGAGAG
GTAGAAAGAGTAATAACATCAGATCTCATATCTCAATATACATTTCCTTA
AGTTAGGAATTAGTGTCTACTTTCTTATGAAACTTCTATAGTTTCTTTTC
AAATCCTAAACAATAATTGATGAGTATACTCAGGGACTCTATGAAAAGAT
AAATGGTAGTTACCTTAGTTACTTTTCTATTGCTACGAGAAAACAAGGTG
ATAAAGGCAACTTGTACAACAGTTTATTGAAACTTATCGTTTTCAAAGGG
TGAGTCCATGACAGAGGGGACCATGGCAGTAGGCGGGCAAGCATGGCACT
GAAACAGTAGCTCAGAGCTCATCCCCAAGCAAGAGGGAGAAAGCTAGCTA
GCTGGAAATGGTGATCTTTTAAAGCCTCAAAATGAAATATCAAAATGATA
AGATTATACTTCCTAATTATTCCCAAGCATTTCTATCAACTGCAGGCCAA
GCACCCAAATTTATGAGCCACTGAGTCTCATTTTCAATTAAATCACCACA
GTGATGTAGCTGAAAACTGTGTTGTGGTGAGATGTAAATAAAGAATAACA
TAGGGACCTAAAGAGAAATAAGAGAATCAGGAAGAAAGAGTGAAATTCAA
GAAGCTAGTAGATTTAG
GAATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTCTCTAGTACTTTTAATATGAAG
GGGTGTTGTATTTTGTTAATGCTCTTTTAGAACCTAATGAAATGATCATG
TGATTTTTTTTCTTTGAGTTTGTTTGAGTAAATTACAATATTGGATTTTC
ATACATTAAACCAATCTTCCATGCCTGGGATGAAGTGTACTTGATCATGG
TGGAAATAATTCTACCTGAAGACCCAGTTACACGACTCTTGGGCATATAA
CCAAAAGATTTCCCACCATACCACAGGGATTTGTGCTCCACTTTGTTCAT
AGTAGCTTTATTTGTGATAGCCAGAAGCTGGAAACAACCCAGATGTCCCT
CAAACAAAGAATGGATACAGAAAATGTGGTTCATTTAGACAATGCAACAC
TACTCAGCTATTAAGAATGAAGACATCATGAGTTTTGAAGCCAAATGGAT
GAAACTAAAAAATATCCTGAATGAGTTAACTCAGACCCAAAAGGGCATGC
ATAGTATATACTCACTAATTAAGTGATATTAGCCATATAAAAAAATAAAA
ACAGAATACCTAGGATGCAATCCACAGAACTCGGAGAAGGTTAACAAGCC
TAAAGGGCCTCATTTGAAGGATGTCTTCAATTCCCCTTTGGGAGGGGAAA
ATAAAAATAATCCCTGTGTAAAGGCGAGATGGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_e07.b1 MSMg01no546_e07.b1 CHROMAT_FILE:
MSMg01no546_e07.b1 PHD_FILE: MSMg01no546_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:30 2005
         (578 letters)



>mm_chr16_64480902_64481879
          Length = 978

 Score =  679 bits (351), Expect = 0.0
 Identities = 393/419 (93%), Gaps = 20/419 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgttttcattatatattaggttggtagtggtagggggatggagaggtagaaa 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaattcattgttttcatcatatattaggttggtagtggtagggggatggagaggtagaaa 360

                                                                       
Query: 65  gagtaataacatcagatctcatatctcaatatacatttccttaagttaggaattagtgtc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 359 gagtaataacatcagatctcatatctcaatatacatttccttaagttaggaatgagtgtc 300

                                                                       
Query: 125 tactttcttatgaaacttctatagtttcttttcaaatcctaaacaataattgatgagtat 184
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 299 tactttcttatgaaacttctatagtttcttttcaaatcctaaacaatagttgatgagtct 240

                                                                       
Query: 185 actcagggactctatgaaaagataaatggtagttaccttagttacttttctattgctacg 244
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 239 actcagggattctatgaaaagataaatggtagttaacttagttacttttctattgctacg 180

                                                                       
Query: 245 agaaaacaaggtgataaaggcaacttgtacaacagtttattgaaacttatcgttttcaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 agaaaacaaggtgataaaggcaacttgtacaacagtttattgaaacttatcgttttcaaa 120

                                                                       
Query: 305 gggtgagtccatg------acagaggggaccatggcagtaggcgggcaagcatggcactg 358
           |||||||||||||      |||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gggtgagtccatgaccactacagaggggaccatggcagtaggcgggcaagcatggcactg 60

                                                                      
Query: 359 aaacagt--------------agctcagagctcatccccaagcaagagggagaaagcta 403
           |||||||              ||||||||||||||||||||||||||||||||||||||
Sbjct: 59  aaacagtagctcagagctcagagctcagagctcatccccaagcaagagggagaaagcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)