Query= MSMg01no546_o09.b1 MSMg01no546_o09.b1 CHROMAT_FILE:
MSMg01no546_o09.b1 PHD_FILE: MSMg01no546_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:21 2005
(685 letters)
>mm_chr16_80196812_80197899
Length = 1088
Score = 1236 bits (639), Expect = 0.0
Identities = 673/685 (98%), Gaps = 5/685 (0%)
Strand = Plus / Minus
Query: 5 gaattctctatatg-aaaatatctgtgtccaaaattgggaaatattgatttcccacattc 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 gaattctctatatgaaaaatatctgtgtccaaaattgggaaatattgatttcccacattc 829
Query: 64 cagcaagacctcattgctgggctgtttcctgggatgcgagttgaattcagagagagccac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 cagcaagacctcattgctgggctgtttcctgggatgcgagttgaattcagagagagccac 769
Query: 124 tgacatgatgtaagagatgatcttttaactcattttctaagttccaaatttacatc--tt 181
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 768 tgacatgatataagagatgatcttctaactcattttctaagttccaaatttacatctttt 709
Query: 182 ttttttctgtgctattatttgtgctatttagtggatgggattcagtaatatcagaagcaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ttttttctgtgctattatttgtgctatttagtggatgggattcagtaatatcagaagcaa 649
Query: 242 taatggagtgccagggtgtggatattaactagactttatattctaggcttcctgcaatat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 taatggagtgccagggtgtggatattaactagactttatattctaggcttcctgcaatat 589
Query: 302 agtgtatag-ctagaattcatatcacttaaggcaaatgccacttatatattcctctctgg 360
||||||||| || || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agtgtatagtgtataagt-gtatcacttaaggcaaatgccacttatatattcctctctgg 530
Query: 361 gtaagtttactaagtttctaaagtaagttagtttcatttaccatcttaactcaaattaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtaagtttactaagtttctaaagtaagttagtttcatttaccatcttaactcaaattaca 470
Query: 421 taagtttatagacttctgatgttgatgaatttaatccattaaagtggaacaattgtcatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 taagtttatagacttctgatgttgatgaatttaatccattaaagtggaacaattgtcatc 410
Query: 481 aattcataccttctttaacatctttaaaaatctgttcttttatgatgttttattttattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aattcataccttctttaacatctttaaaaatctgttcttttatgatgttttattttattt 350
Query: 541 tttgtggagcaaaagattacatgttaaatgggagcatgtgcatttaaagctgttatcact 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 349 tttgtggagcaaaagattacatgttaaatgggagcatgtgcatttaaagctcttatcact 290
Query: 601 cttgatatctagaatttatcatagaatgttttaaatactagataaaggactagataaaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cttgatatctagaatttatcatagaatgttttaaatactagataaaggactagataaaat 230
Query: 661 aggaggaaactcttcacttttgcag 685
|||||||||||||||||||||||||
Sbjct: 229 aggaggaaactcttcacttttgcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1088
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1078
Effective search space: 727650
Effective search space used: 727650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_o09.g1 MSMg01no546_o09.g1 CHROMAT_FILE:
MSMg01no546_o09.g1 PHD_FILE: MSMg01no546_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:21 2005
(585 letters)
>mm_chr16_80030247_80031231
Length = 985
Score = 1125 bits (582), Expect = 0.0
Identities = 584/585 (99%)
Strand = Plus / Plus
Query: 1 accttttcatcagagaatgaaagactcacagggccatgtgtattcatttacatgggctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttttcatcagagaatgaaagactcacagggccatgtgtattcatttacatgggctga 260
Query: 61 atagcagaaatgtttctaaaattagtgagttgtataaaaacgtgtagcaacagtgtcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagcagaaatgtttctaaaattagtgagttgtataaaaacgtgtagcaacagtgtcttt 320
Query: 121 ttttttttttgcctgcatcctgaatagagcataatttttaacattcatcatgatagtctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttttttgcctgcatcctgaatagagcataatttttaacattcatcatgatagtctg 380
Query: 181 aagatgctaacagatatcttctggcagaagcagttttatttacttaaaaatctttgtaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagatgctaacagatatcttctggcagaagcagttttatttacttaaaaatctttgtaac 440
Query: 241 tacatactcaggaatttttaattgaactttgctgtctttgaaaaatattcacatatgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacatactcaggaatttttaattgaactttgctgtctttgaaaaatattcacatatgaaa 500
Query: 301 gtcatccactttatttaacactgctagtatgggtttatttattttctctctttttatagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatccactttatttaacactgctagtatgggtttatttattttctctctttttatagt 560
Query: 361 tccttatgtctttcacaagtgatcagctgacctaagacaataatacgcctatgaactaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccttatgtctttcacaagtgatcagctgacctaagacaataatacgcctatgaactaaa 620
Query: 421 ttaatgatatcacagagtcagaaattaaagcacgtttttgtagtcataaaaaataaagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatgatatcacagagtcagaaattaaagcacgtttttgtagtcataaaaaataaagga 680
Query: 481 naaaatggaaaatataaagatgatttgtttcaaggatatgtatgtctctgaacagattat 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaatggaaaatataaagatgatttgtttcaaggatatgtatgtctctgaacagattat 740
Query: 541 ctacctgtcccaaatatctttcttgtgtcccttcaataattttgt 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctacctgtcccaaatatctttcttgtgtcccttcaataattttgt 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
