BAC Information

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BAC

Clone NameMSMg01-547C22
Chromosome16 (Build37)
Map Location 90,471,908 - 90,472,535
singlet/doubletsinglet
Overlap geneHunk
Upstream gene5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175
Downstream gene2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547C22.T7 (MSMg01no547_c22.b1)MSMg01-547C22.TJ (MSMg01no547_c22.g1)
ACCAG611831AG611832
length754753
length of high quality
(start - end)
644 (41 - 684)629 (69 - 697)
definitionCHROMAT_FILE: MSMg01no547_c22.b1 PHD_FILE: MSMg01no547_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:44 2005CHROMAT_FILE: MSMg01no547_c22.g1 PHD_FILE: MSMg01no547_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAATTCTGAACATCTATGCTCCAAATGCAAAGGCACACACATTGATAAA
AGGAAGTCTACTAAAGCTCAAAGCACACATTGCACCTCACACAGTAATAG
TGGGAGACTTCAACACCCTACTCTCATCAATGGACAGATCATGAAAACAC
AAACTAAACAGAGACACACTGAAAATAACAGAGGTTATGGACCAAATGGA
TTTAACAGATATTTGTAGAACATTTCATCCTAGAACAAAAGAATATGCCT
TCTTCTCAGCACCTCATAGTACCTTCTCCAAAACTGACCATATAATTGGT
GACAAAACAGGCCTCAACAGATACAAGAAGACTGAAATAATCCAATGCAT
CCTATCAGATCACCATGGACTAAGGCTGGTCTTCAATAGCAACAAAAAGA
ACAGAAAGCCCACATAGACATGGAAGATGAACAATGCTCTACTCAATGAT
AACTTGGTCAAGGAAGAAATAAAAAAATTAAAGACTTTTTAGAATTTAAT
GGAAATGAAGCCACAACATACCCAAACTTATGGGACACAATGAAAGCAGA
GCTAAGAAGAAAACTCATAGCTCTGAGTGCCTCCTAAAAGAAACTGGGGA
GAGCATACACTAGCAGCCTGACAGCACACCTGAAAGCTCTAGAACAAAAA
GAAAGCAATACACCCAAGAGGAGTAGACAGCAGGGAAATATCAAACTCAG
GGCT
TAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAATAGAGAATTGATTTGAAAGAAAGGAGCCTT
GGAGAAGCACGTGTGTGATCCTGGCTACTCAGAAGTCTAAGGTGGGGAAG
ATAGAAGTTTGAAGTCCTCCTGGGCTAGCCTGGGCTACAGATCAAGTTCA
AGGCTAGCCTGGGCTACCTTGTGAAAGTCCATCTCAAAATCAAAAGTAAA
ATAGGGCTAAAAACATATATGATGCCACAGGCTTAACCCCTGGTACATCA
ATCAATTAACCAATCAACCAGCAAGTACTTCATTGACCTTGTGAGCCATG
GTGCCCCATGGTAAGGGTCAAAGTGTCTCGTTCAAATCCATTCATCTTTT
TCCCTTTTGATTGCTCAGGCACCACCATGAGCATTTTTTTTCAGTTTCTA
CTCTTTCAGCCTCCACATGTGATAGTAGTACATCTCAGTGTTTGATCTCT
GAGTGGCTACAGGAGCACACAGATTATTCCAGAAATGCATGGCCCAGGGA
GAGCAAGCCAATTGCTGCTGTCTTGGGTCCCAGACATCCTTGGACTGATG
TCTTAAGCTCTTTGGATATACAGCAGCTCTTTAAAAGATAAATGTGGGAG
GAAATGCAATTTAAAACTCCAGGTATCTGAAGGTGGGGCTGAACTCACTT
TCTGTGAGCTGTGGAATGGAAGCCCTGCCAGAGACCCAAGGGCAGAGGCT
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_c22.g1 MSMg01no547_c22.g1 CHROMAT_FILE:
MSMg01no547_c22.g1 PHD_FILE: MSMg01no547_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:44 2005
         (629 letters)



>mm_chr16_90471707_90472735
          Length = 1029

 Score = 1137 bits (588), Expect = 0.0
 Identities = 619/630 (98%), Gaps = 4/630 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   atagagaattgatttgaaagaaaggagccttggagaagcacgtgtgtgatcctggctact 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atagagaattgatttgaaagaaaggagccttggagaagcacgtgtgtgatcctggctact 261

                                                                       
Query: 62  cagaagtctaaggtggggaagatagaagtttgaagtcctcctgggctagcctgggctaca 121
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 262 cagaagtctaaggtggggaagacagaagtttgaagtcctcctgggctagcctgggctata 321

                                                                       
Query: 122 gatcaagttcaaggctagcctgggctaccttgtgaaagtccatctcaaaatcaaaagtaa 181
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 322 gatcaagttcaaggctagcctgggctaccttgtgaaagcccatctcaaaatcaaaagtaa 381

                                                                       
Query: 182 aatagggctaaaaacatatatgatgccacaggcttaacccctggtacatcaatcaattaa 241
           |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||
Sbjct: 382 aatagggctaaaaacatat--gatgccacaggcttaacccctggtacataaatcaattaa 439

                                                                       
Query: 242 ccaatcaaccagcaagtacttcattgaccttgtgagccatggtgccccatggtaagggtc 301
           ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 ccaatcaaccagcaagtacctcattgaccttgtgagccgtggtgccccatggtaagggtc 499

                                                                       
Query: 302 aaagtgtctcgttcaaatccattcatcttttt-cccttttgattgctcaggcaccaccat 360
           |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 500 aaagtgtctcgttcaaatccattcatcttttttcccttttgattgctcagacaccaccat 559

                                                                       
Query: 361 gagcatttttttt-cagtttctactctttcagcctccacatgtgatagtagtacatctca 419
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagcatttttttttcagtttctactctttcagcctccacatgtgatagtagtacatctca 619

                                                                       
Query: 420 gtgtttgatctctgagtggctacaggagcacacagattattccagaaatgcatggcccag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgtttgatctctgagtggctacaggagcacacagattattccagaaatgcatggcccag 679

                                                                       
Query: 480 ggagagcaagccaattgctgctgtcttgggtcccagacatccttggactgatgtcttaag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggagagcaagccaattgctgctgtcttgggtcccagacatccttggactgatgtcttaag 739

                                                                       
Query: 540 ctctttggatatacagcagctctttaaaagataaatgtgggaggaaatgcaatttaaaac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctctttggatatacagcagctctttaaaagataaatgtgggaggaaatgcaatttaaaac 799

                                         
Query: 600 tccaggtatctgaaggtggggctgaactca 629
           ||||||||||||||||||||||||||||||
Sbjct: 800 tccaggtatctgaaggtggggctgaactca 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)