BAC Information

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BAC

Clone NameMSMg01-548B16
Chromosome16 (Build37)
Map Location 87,721,537 - 87,890,281
singlet/doubletdoublet
Overlap geneBach1, LOC100039901
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63
Downstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548B16.T7 (MSMg01no548_b16.b1)MSMg01-548B16.TJ (MSMg01no548_b16.g1)
ACCAG612532AG612533
length742726
length of high quality
(start - end)		464 (47 - 510)498 (74 - 571)
definitionCHROMAT_FILE: MSMg01no548_b16.b1 PHD_FILE: MSMg01no548_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:56 2005CHROMAT_FILE: MSMg01no548_b16.g1 PHD_FILE: MSMg01no548_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,721,537 - 87,721,996)(87,889,788 - 87,890,281)
sequence
AACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAACCTCAGAGGTACCTGGGGGTAGGAGTCCTTGCTACGTACGT
GGCACGCACTTTAATCTTCCTGAAAACTCGATGCTGGTTTTCATCGTATC
GGCGCTGCTTCCTGCCATCCCTGTATCAGGACCTATTTTTCCACGACCCG
TTCTTCACCACTGTCTTTGCTTTGTAGCAATTTTACAGCGTAAGGCAGAG
GAGGCTACCTTTTCTGGAAGGACATGGAGTGTAAGGCCCCAGGGTTCAGT
TACTGGAACCACCAAAACAGACCGACCCAAAAATACTCTAGGAAAAAAAT
CTTCCTTTTTTGTTCTAATAGTTTCTCCGTTGGCAAGTGAGATGTATTGC
TTTTTAAATAAGCCATATGAAATTAAATTTTTGTCAGAACGGAAATTTCT
TATCATGCTATAGAAATGATTAGCCCACTTAATACCAACAAGTATTGTGT
AGTGCCTTTGTGTGGTAATTAATATTCAATAAAATGGAATTTATTTGGGG
AAATAAGGAGCACATGTTAAAAACTCTTTAGGCAGAAAACTTAAAGAAAT
TGTTAATTAGTAACCTTCTTTTAAGCTACTATTTAAAGTACTAAACCTAC
CCTGGGTAAGGTAACTTTCCTTTTTGAAATGCACAGGCTGTTTGGGCTTG
GAGGTGTCTGGGGTTTGCTGGAATGGGGTGTGAACTGGTTGA

ACTATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACACCCCTAAGCCCCTTACCCCATAA
AAACCCCTAGCTTCTGAGCCTCGTAGCTGACATCCATTATCTCCTGTGTG
GGATGCATGTCAGTCCAGAGCTCCATCATTAAACGACCTCGTGTAATTAC
ATCAAGGCCTTTTCGTGATTCTTTGGGTGCACGCCGAATCGGGAATTGAG
TGGGGGTTTCCCCACTAGGTTCTATCAAAACCATAAGATATATTTCTCAC
TGATCCTCTAATGTCCTCTTTGTATCAACTACAATGTTGAAATAATTGAG
TTCAAACCTATCCTGTTGATTAAATAGGATAGGTGACCTGGACCAGTAGT
TCTTCCTGTGTTTATACTGGGACTCTGAAGGGGAGTGCCAAAAATAAGGA
AAGTAGTCAAAAGCTGGTGTCAGATGGGCCGTGAGGGCTGATGAGCCAAG
CCAGCTAGCTTTTAGTACCTCAGCTCCTAACATACCCCTCAATGAGGAAG
TAGGAAACAAGTCAGTAATGAGAATCAGATGGCAGAATTTCAGGGCACTC
AGAGTGCCTCTAGGTCCTCTTCTGCAAGGTGCACATTGCTCCAAGTACAC
AAAGTATCTCACATCTCAGTGTCTGGAACATGTCACCACAACTTTACAGG
AAAAATGTAAAGTTTCAGGACCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_b16.b1 MSMg01no548_b16.b1 CHROMAT_FILE:
MSMg01no548_b16.b1 PHD_FILE: MSMg01no548_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:56 2005
         (464 letters)



>mm_chr16_87721333_87722196
          Length = 864

 Score =  835 bits (432), Expect = 0.0
 Identities = 453/460 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaacctcagaggtacctgggggtaggagtccttgctacgtacgtggcacgcact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaacctcagaggtacctgggggtaggagtccttgctacgtacgtggcacgcact 264

                                                                       
Query: 65  ttaatcttcctgaaaactcgatgctggttttcatcgtatcggcgctgcttcctgccatcc 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 ttaatcttcctgaaaactcgatgctggttttcatcgcatcggcgctgcttcctgccatcc 324

                                                                       
Query: 125 ctgtatcaggacctatttttccacgacccgttcttcaccactgtctttgctttgtagcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtatcaggacctatttttccacgacccgttcttcaccactgtctttgctttgtagcaa 384

                                                                       
Query: 185 ttttacagcgtaaggcagaggaggctaccttttctggaaggacatggagtgtaaggcccc 244
           |||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 385 ttttacagcgtaagacagaggaggctgccttttctggaaggagatggagtgtaaggcccc 444

                                                                       
Query: 245 agggttcagttactggaaccaccaaaacagaccgacccaaaaatactctaggaaaaaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggttcagttactggaaccaccaaaacagaccgacccaaaaatactctaggaaaaaaat 504

                                                                       
Query: 305 cttccttttttgttctaatagtttctccgttggcaagtgagatgtattgctttttaaata 364
           | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 cctccttttttgttctaatagtttctccattggcaagtgagatgtattgctttttaaata 564

                                                                       
Query: 365 agccatatgaaattaaatttttgtcagaacggaaatttcttatcatgctatagaaatgat 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 565 agccatatgaaattaaatttttgtcagaacggaaatttcttaacatgctatagaaatgat 624

                                                   
Query: 425 tagcccacttaataccaacaagtattgtgtagtgcctttg 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagcccacttaataccaacaagtattgtgtagtgcctttg 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no548_b16.g1 MSMg01no548_b16.g1 CHROMAT_FILE:
MSMg01no548_b16.g1 PHD_FILE: MSMg01no548_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:56 2005
         (498 letters)



>mm_chr16_87889384_87890281
          Length = 898

 Score =  909 bits (470), Expect = 0.0
 Identities = 488/494 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   cccctaagccccttaccccataaaaacccctagcttctgagcctcgtagctgacatccat 64
           ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct: 898 cccctaagccccttaccccataaaaacccctagcttctgagcctcatggctgacatccgt 839

                                                                       
Query: 65  tatctcctgtgtgggatgcatgtcagtccagagctccatcattaaacgacctcgtgtaat 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 838 tatctcctgtgtgggatgcatgtcagtccagagttccatcattaaacgacctcgtgtaat 779

                                                                       
Query: 125 tacatcaaggccttttcgtgattctttgggtgcacgccgaatcgggaattgagtgggggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tacatcaaggccttttcgtgattctttgggtgcacgccgaatcgggaattgagtgggggt 719

                                                                       
Query: 185 ttccccactaggttctatcaaaaccataagatatatttctcactgatcctctaatgtcct 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 718 ttccccactaggttctatcaaaaccataagatatatttctcactgaccctctaatgtcct 659

                                                                       
Query: 245 ctttgtatcaactacaatgttgaaataattgagttcaaacctatcctgttgattaaatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctttgtatcaactacaatgttgaaataattgagttcaaacctatcctgttgattaaatag 599

                                                                       
Query: 305 gataggtgacctggaccagtagttcttcctgtgtttatactgggactctgaaggggagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gataggtgacctggaccagtagttcttcctgtgtttatactgggactctgaaggggagtg 539

                                                                       
Query: 365 ccaaaaataaggaaagtagtcaaaagctggtgtcagatgggccgtgagggctgatgagcc 424
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ccagaaataaggaaagtagtcaaaagctggtgtcagatgggccgtgagggctgatgagcc 479

                                                                       
Query: 425 aagccagctagcttttagtacctcagctcctaacatacccctcaatgaggaagtaggaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aagccagctagcttttagtacctcagctcctaacatacccctcaatgaggaagtaggaaa 419

                         
Query: 485 caagtcagtaatga 498
           ||||||||||||||
Sbjct: 418 caagtcagtaatga 405


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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