BAC Information

Click to search

BAC

Clone NameB6Ng01-001E04
Chromosome17 (Build37)15 (Build37)
Map Location 37,314,006 - 37,314,42063,231,298 - 63,232,455
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355
Downstream geneUbd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001E04.bB6Ng01-001E04.g
ACCDH839634DH839635
length1461,157
definitionDH839634|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E04, 5' end.DH839635|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,314,006 - 37,314,420)(63,231,298 - 63,232,455)
sequence
atgttttttgttttattttgcttgatttatttttgttttttgtttgtgtg
tgtttttttgtttgtttgtttgtttaatgtttcattgagtgtttgggttt
tttgtttttttttctgttttttgttttgtttctgtttttttgtttt
gaattcctgacacacacagacacatcatcattggtgtaatgactcgattt
gatatttaaaacgattgcacttaaaagtatttttaagaaacaaaatgtct
agtacatatttaatgatcaaatagagaacttaaaggaaccacaacttcca
ggcaataaatctagtaaaaagcctaagagacatgccaaggactatgccag
gaattatctgtctgatgcttgtgatacctaaaagtgactattactcccat
gtggaaatctgactttccttcccttcatattcctgctgaggcaaaaactc
aggcaaaatcagcaagcagtggaggttgaagttttatggtgggagactaa
gcaaagagtctaccatgaacccttgagagtcccacagaaaactaggggtg
ggcctgggaactggaatcaggaatcccaactgctacttcctgcttccaat
caccctcccaggagagctgcccccgctgtgtctgagtggaagaaaggctg
agagcatccctgaaaaaccaagttcttttcataaattcagtcttctgggg
tgaaacagcagaaaacaaacaaaggaactgtgggctttagaaagtaacat
ttccctttcatcagctggagggcagtggccagagaaagagacagtaaaag
cagccacactgcttgctggccacagaagacgaagtcccaatgtgccttga
acactcacccaccagcttaggagttctgtcatgctcagaataacgtggtt
gtacaacaagggcttctgtttctccctaatgagttgattatatcctgtca
gaagagtcataaggccatcaaatgtcaagtccattttctcaaacatatta
ttttcatagcagctgggcctgactcactctcaaaacagggcatcccattg
ttcccttcaacagataatgctggagtgaaactcaattaaaagagaaaggg
aaggggcttagaggacacatgatcccgattcatgcaagtttacatttgct
gtttagaagccaatctattaggatggttggtcacttagtcaccattagtt
cctaatgccggaagaaaatagacatggaatgtgttgttcacccccaggac
tgtttctcataaggagggagggcatgggtgtagtcactgcctgaatgctg
aagaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_37314006_37314420
seq2: B6Ng01-001E04.b_52_197

seq1  ATGTTTTTTGTTTTATTTTGCTTTTTTCTTTCTTGCTTTTTTGTTTGTTT  50
      |||||||||||||||||||||||  ||          ||||||||| |||
seq2  ATGTTTTTTGTTTTATTTTGCTTGATT--------TATTTTTGTTT-TTT  41

seq1  GTTTGTGTGTCTGTGTTTTTGGTTTTTTGGCTTTTTTTCGGTTTTCTTT-  99
      |||||||||  ||| |||||| || ||||  ||| |||    |||| || 
seq2  GTTTGTGTG--TGTTTTTTTGTTTGTTTG--TTTGTTTAATGTTTCATTG  87

seq1  ----TTTGATTTTTTTGTTTAAGTT--TGTTTTTTGTTTTGTTGTTTTTG  143
          ||||  ||||||||||   ||  ||||||||||||||||  | || 
seq2  AGTGTTTGGGTTTTTTGTTTTTTTTTCTGTTTTTTGTTTTGTTTCTGTT-  136

seq1  CTTTTTATTTTTTTTGCGTGTGTTTTGATTGTGAATTCTTGTTTGCTTTT  193
       ||||| ||||                                       
seq2  -TTTTTGTTTT---------------------------------------  146

seq1  TGTGGTTTTGGTTTTTCATTTGTGTTTTGTTTATTTTTTGTTTTACATTT  243
                                                        
seq2  --------------------------------------------------  146

seq1  TCTATTTCTGTTTTTTTTTGTTGTTTGTTGTTTTTTGTTGGTGTTTTGGG  293
                                                        
seq2  --------------------------------------------------  146

seq1  TTTTGGTTTCTTTTCTTTGTGGTTTTGTTTTTGTTTTTGTTTTATGTTTT  343
                                                        
seq2  --------------------------------------------------  146

seq1  TCGTTTTGTTGTTCGTTTTGTTTTGTTTTGTTTTTGTTTGTTCTTTGTTG  393
                                                        
seq2  --------------------------------------------------  146

seq1  GTTTTGTCTGTTTTTTTGTTTT  415
                            
seq2  ----------------------  146

seq1: chr15_63231298_63232455
seq2: B6Ng01-001E04.g_66_1222

seq1  GAATTCCTGACACACACAGACACATCATCATTGGTGTAATGACTCGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACACACACAGACACATCATCATTGGTGTAATGACTCGATTT  50

seq1  GATATTTAAAACGATTGCACTTAAAAGTATTTTTAAGAAACAAAATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAAAACGATTGCACTTAAAAGTATTTTTAAGAAACAAAATGTCT  100

seq1  AGTACATATTTAATGATCAAATAGAGAACTTAAAGGAACCACAACTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATATTTAATGATCAAATAGAGAACTTAAAGGAACCACAACTTCCA  150

seq1  GGCAATAAATCTAGTAAAAAGCCTAAGAGACATGCCAAGGACTATGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAAATCTAGTAAAAAGCCTAAGAGACATGCCAAGGACTATGCCAG  200

seq1  GAATTATCTGTCTGATGCTTGTGATACCTAAAAGTGACTATTACTCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCTGTCTGATGCTTGTGATACCTAAAAGTGACTATTACTCCCAT  250

seq1  GTGGAAATCTGACTTTCCTTCCCTTCATATTCCTGCTGAGGCAAAAACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATCTGACTTTCCTTCCCTTCATATTCCTGCTGAGGCAAAAACTC  300

seq1  AGGCAAAATCAGCAAGCAGTGGAGGTTGAAGTTTTATGGTGGGAGACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAATCAGCAAGCAGTGGAGGTTGAAGTTTTATGGTGGGAGACTAA  350

seq1  GCAAAGAGTCTACCATGAACCCTTGAGAGTCCCACAGAAAACTAGGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGTCTACCATGAACCCTTGAGAGTCCCACAGAAAACTAGGGGTG  400

seq1  GGCCTGGGAACTGGAATCAGGAATCCCAACTGCTACTTCCTGCTTCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGAACTGGAATCAGGAATCCCAACTGCTACTTCCTGCTTCCAAT  450

seq1  CACCCTCCCAGGAGAGCTGCCCCCGCTGTGTCTGAGTGGAAGAAAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCCAGGAGAGCTGCCCCCGCTGTGTCTGAGTGGAAGAAAGGCTG  500

seq1  AGAGCATCCCTGAAAAACCAAGTTCTTTTCATAAATTCAGTCTTCTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATCCCTGAAAAACCAAGTTCTTTTCATAAATTCAGTCTTCTGGGG  550

seq1  TGAAACAGCAGAAAACAAACAAAGGAACTGTGGGCTTTAGAAAGTAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGCAGAAAACAAACAAAGGAACTGTGGGCTTTAGAAAGTAACAT  600

seq1  TTCCCTTTCATCAGCTGGAGGGCAGTGGCCAGAGAAAGAGACAGTAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTCATCAGCTGGAGGGCAGTGGCCAGAGAAAGAGACAGTAAAAG  650

seq1  CAGCCACACTGCTTGCTGGCCACAGAAGACGAAGTCCCAATGTGCCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACACTGCTTGCTGGCCACAGAAGACGAAGTCCCAATGTGCCTTGA  700

seq1  ACACTCACCCACCAGCTTAGGAGTTCTGTCATGCTCAGAATAACGTGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACCCACCAGCTTAGGAGTTCTGTCATGCTCAGAATAACGTGGTT  750

seq1  GTACAACAAGGGCTTCTGTTTCTCCCTAATGAGTTGATTATATCCTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACAAGGGCTTCTGTTTCTCCCTAATGAGTTGATTATATCCTGTCA  800

seq1  GAAGAGTCATAAGGCCATCAAATGTCAAGTCCATTTTCTCAAACATATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCATAAGGCCATCAAATGTCAAGTCCATTTTCTCAAACATATTA  850

seq1  TTTTCATAGCAGCTGGGCCTGACTCACTCTCAAAACAGGGCATCCCATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAGCAGCTGGGCCTGACTCACTCTCAAAACAGGGCATCCCATTG  900

seq1  TTCCCTTCAACAGATAATGCTGGAGTGAAACTCAATTAAAAGAGAAAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCAACAGATAATGCTGGAGTGAAACTCAATTAAAAGAGAAAGGG  950

seq1  AAGGGGCTTAGAGGACACATGATCCCGATTCATGCAAGTTTACAATTTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGGGGCTTAGAGGACACATGATCCCGATTCATGCAAGTTTAC-ATTTGC  999

seq1  TGTTTAGAAGCCAATTCTATTAGGATGGTTTGGTCACTTAGTTCACAATT  1050
      |||||||||||||| ||||||||||||| |||||||||||| |||| |||
seq2  TGTTTAGAAGCCAA-TCTATTAGGATGG-TTGGTCACTTAG-TCACCATT  1046

seq1  AGTTCCTAATGCCGG-AGGAAATAGACATGGAATGTGTTGTTCACCCCCA  1099
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  AGTTCCTAATGCCGGAAGAAAATAGACATGGAATGTGTTGTTCACCCCCA  1096

seq1  GGACTGTTTCTCATAAGGGAGGGAGGGCATGGTGTTAGTCACTGCCTG-A  1148
      |||||||||||||||| |||||||||||||||   ||||||||||||| |
seq2  GGACTGTTTCTCATAA-GGAGGGAGGGCATGGGTGTAGTCACTGCCTGAA  1145

seq1  TGCT--AGAAAG  1158
      ||||  ||||||
seq2  TGCTGAAGAAAG  1157