BAC Information

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BAC

Clone NameB6Ng01-001E07
Chromosome17 (Build37)
Map Location 23,485,963 - 23,487,065
singlet/doubletsinglet
Overlap geneEG638102
Upstream gene6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002
Downstream geneEG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001E07.bB6Ng01-001E07.g
ACCDH839640DH839641
length1,100472
definitionDH839640|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E07, 5' end.DH839641|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgatgtgataagtttaatacatcatattcaaactgcccagtttc
atttgaagtagtatctcctgttgctctgatagtatgaaatttaaagttac
ttttcttcctcaatgtgattaagaattccattcttagagcaaagaacata
agagctgaaaattaagttataaaactgcatatccatttagaggatagtat
tgaaatctcctgtgtgttctaacaagacctcaaattatatttatatatat
atatatatatatatatatatatatatatatatatatatatattctaatct
caatgtggaatctaataattaaaaatgtgaagacatcaatgaaatatttc
aaacattagaatcatatatttatgtgaaagactgttcaatgatatactaa
acaaggaagtacaggattattataagaatggtaataaaaaatcaaagaag
ggcaggaatcacctgtgggtgaatacgattaaactctgaaatatttaatc
actgagacactgagtccaaaaataacaaaggatttcagtaaattttaaaa
taattaaagactttcaagcacacacacacacacacacacacacacacaca
cacacacgcacacacacacacacacacatatatatatatatacatatata
tatatatatatatatatatatatatatatatgaaaaacaaaatgaatcaa
aaaaattacctcagtgaataatctcacagaagcatgctccaaattgagga
cggaagaaaaagccataagaagtagaaaatacaaactacaacaaagataa
aaataaggaggaaaaatgaaactcattgaataaggatgtttgattaaaga
tcaaatttaaaaccaatgggaacaagagaaagaagagccactctaggtat
caacatatacccattatgttgctgctgtacaaatacaaaatagtgtggga
aaagtagacatctgtctagtagaagcatataaatagaaattttaaaatac
caaatactccgcctgtgaaaaaaatagttctggacaaactttaccttaaa
atttattgtgagaccaagaagctaatatgaaagcacaggaagaaaccctg

cagatttgtttctgtattcagggcttgatgaggtgggaaactgggttctg
attatgttcacatattttggctctcttgcttatggttttgcccttgcctc
tcaccatctggttatatctggtatgtcctggtttgggtgtttctgaatgg
agcctgcctcctttgtacctgggttgcttcaggtcttctggtaggcctgt
ggccttggctgtagcagacatcctgtggggctttccaattccagggtctt
cagaggggcagagaagctgctgatctgttgtcccggctacagcagatctc
ctttagaaggccctgagactgtttgttcttcagaagagcagtcaagctgt
tgtcctatgtgaaggttttctccgggggggttgggggtggggaacacttt
ggactgtgatttctctttacccttgtgcagcagaactccatggaagcttt
ttgggtcatttcctttatatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23485963_23487065
seq2: B6Ng01-001E07.b_45_1144

seq1  GAATTCTGATGTGATAAGTTTAATACATCATATTCAAACTGCCCAGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGTGATAAGTTTAATACATCATATTCAAACTGCCCAGTTTC  50

seq1  ATTTGAAGTAGTATCTCCTGTTGCTCTGATAGTATGAAATTTAAAGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTAGTATCTCCTGTTGCTCTGATAGTATGAAATTTAAAGTTAC  100

seq1  TTTTCTTCCTCAATGTGATTAAGAATTCCATTCTTAGAGCAAAGAACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCTCAATGTGATTAAGAATTCCATTCTTAGAGCAAAGAACATA  150

seq1  AGAGCTGAAAATTAAGTTATAAAACTGCATATCCATTTAGAGGATAGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAAAATTAAGTTATAAAACTGCATATCCATTTAGAGGATAGTAT  200

seq1  TGAAATCTCCTGTGTGTTCTAACAAGACCTCAAATTATATTTATATATAT  250
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TGAAATCTCCTGTGTGTTCTAACAAGACCTCAAATTATATT--TATATAT  248

seq1  ATATATATATATATATATATATATATATATATATATATATATATTCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATATATTCTAAT  298

seq1  CTCAATGTGGAATCTAATAATTAAAAATGTGAAGACATCAATGAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGTGGAATCTAATAATTAAAAATGTGAAGACATCAATGAAATATT  348

seq1  TCAAACATTAGAATCATATATTTATGTGAAAGACTGTTCAATGATATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATTAGAATCATATATTTATGTGAAAGACTGTTCAATGATATACT  398

seq1  AAACAAGGAAGTACAGGATTATTATAAGAATGGTAATAAAAAATCAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGAAGTACAGGATTATTATAAGAATGGTAATAAAAAATCAAAGA  448

seq1  AGGGCAGGAATCACCTGTGGGTGAATACGATTAAACTCTGAAATATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGAATCACCTGTGGGTGAATACGATTAAACTCTGAAATATTTAA  498

seq1  TCACTGAGACACTGAGTCCAAAAATAACAAAGGATTTCAGTAAATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGACACTGAGTCCAAAAATAACAAAGGATTTCAGTAAATTTTAA  548

seq1  AATAATTAAAGACTTTCAAGCACACACACACACACACACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTAAAGACTTTCAAGCACACACACACACACACACACACACACACA  598

seq1  CACACACACGCACACACACACACACACACATATATATATATATAC--ATA  648
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  CACACACACGCACACACACACACACACACATATATATATATATACATATA  648

seq1  TATATATATATATATATATATATATATATATATGAAAAACAAAATGAATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATGAAAAACAAAATGAATC  698

seq1  AAAAAAATTACCTCAGTGAATAATCTCACAGAAGCATGCTCCAAATTGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTACCTCAGTGAATAATCTCACAGAAGCATGCTCCAAATTGAG  748

seq1  GACGGAAGAAAAAGCCATAAGAAGTAGAAAATACAAACTACAACAAAGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAAGAAAAAGCCATAAGAAGTAGAAAATACAAACTACAACAAAGAT  798

seq1  AAAAATAAGGAGGAAAAATGAAACTCATTGAATAAGGATGTTTGATTAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAAATAAGGAGGAAAAATGAAACTCATTGAATAAGGATGTTTGATT-AA  847

seq1  AGATCAAATTTAAAACCAATGGGAACAAGAGAAAGAAGAAGCCACTCTAG  898
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGATCAAATTTAAAACCAATGGGAACAAGAGAAAGAAG-AGCCACTCTAG  896

seq1  GTATCAACAATATACCCATTATGTTGCTGCTGTACAAATACAAAATAGTG  948
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAC-ATATACCCATTATGTTGCTGCTGTACAAATACAAAATAGTG  945

seq1  TGGGAAAAGTAGACATCTGTCTAGTAGAAGCATATAAATAGAAATTTTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAGTAGACATCTGTCTAGTAGAAGCATATAAATAGAAATTTTAA  995

seq1  AATAGCAAATACTCAGCCTGTGAAATAAAATAGTTCATGACAAACTTTA-  1047
      |||| ||||||||| |||||||||| ||||||||||  ||||||||||| 
seq2  AATACCAAATACTCCGCCTGTGAAA-AAAATAGTTCTGGACAAACTTTAC  1044

seq1  CTTAAAATTTATTGT-AGACCAAGAAGCATATATGAAAGCACAGGAGAGA  1096
      ||||||||||||||| ||||||||||||  |||||||||||||||| |||
seq2  CTTAAAATTTATTGTGAGACCAAGAAGCTAATATGAAAGCACAGGA-AGA  1093

seq1  ACCCCTG  1103
      | |||||
seq2  AACCCTG  1100