BAC Information

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BAC

Clone NameB6Ng01-001N08
Chromosome17 (Build37)
Map Location 75,331,284 - 75,455,833
singlet/doubletdoublet
Overlap geneLOC100043672, Ltbp1
Upstream geneSrd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27
Downstream geneEG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001N08.bB6Ng01-001N08.g
ACCDH840043DH840044
length8281,058
definitionDH840043|Mus musculus domesticus DNA, BAC clone: B6Ng01-001N08, 5' end.DH840044|Mus musculus domesticus DNA, BAC clone: B6Ng01-001N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,455,006 - 75,455,833)(75,331,284 - 75,332,354)
sequence
gaattcccataactgaatcttctagaaagatgaatttcacatttcggaac
caccgagtcgactttatagagttttcatccatgtggaaacccactctaaa
tacatgaaattgtgtccgtgtgtatcagacagtggcagtagtaggtctgc
tggcctcatccccacctctctctctgaatcagactggcacatctcacagc
ctttcttgactttgaatacccaaccacactaattgccgtgcaaagctaca
atttcaccaagtaggtggctgagtaagttgccaggaatgcaagtacccaa
ggccacatgcaggatcagaggtctccaaagcagacttgctcagggcctca
ttctggggtttgaggccttcgtgtcactaaacctcccactgctgcgagct
ctaccatgagcttatcaggaacggagattccataagatttacactaacat
gggtagttagctaacatgggtagttagctaacatgggtaattatttaaca
tgggtaggtagctgggatgaatttgcctcttctgatgctaccaataactg
ttaagcacatgagttccaagggttttggcttctgggtcatccccactcca
ttccctgaactgacattaccgacctgggccactgtgtcccatcttctcca
cagatgctgggaatcaaaacttaactcctcatgcttgcccagcaaggcac
tttactgacgagccatctcagctatcctggcctatgcatttagacagtgc
cttgccggcatgttttcagggatttcatacccacatgtctaggcatgtgc
ccaaacaatgtcattaaaaattactgtg
gaattcacctattgcatggttgaaaatgtgctggtctgggagccacctca
aggtctgatttttggaggcttttgaaggcagatgacattaaaggtatgga
tgcatcaccccaatgcgcactgtcttgaatagtgtcttcctcggtgacaa
tggttgacaatgaacgttgcctcttttctttttatggtctgataaacatg
ctggctgtgttgggctcatagcaagtgcttctttaccaacaatccttggc
ttcgtgatgggtgatgtcccacgagagccattaaaggctgaaaatactgc
aggtgaaaatgaactgaacgcgtatagtctacaagcactagatcaactac
atcaagcttggcagtgatggctactccatctcacaagagcttgtctcatt
ggaaactgtggtcactgtcattgccctgtgcctcataaaacatggactcc
ctgtcaaggctggaaccataggcaaatgacttggcttggaaacacctggt
agacaaacccctgagtgcatctgtgggtatttccagagaagttaaactga
ggagcaggaaagatgtaccctcaatactgggggttccatcctgcggacga
gggttccagactgaataaagtgtgtgtgtgtgggggaaggacaggattgt
agccagcagaatagcagcactcattgttcattgcttctatactgtgtaca
caatgtaaccaactgcctcacgttcctgcttttctgcagtaatggactgt
ctcccttcaaactgtgagccaaaaccaaccctttcccctctcgcattgct
tcttgccaggtagttggtaacagcaatgagaacccatcagggaaccaaac
tgtaagatatggctgctgctccacacagacggctctgctctgtcaaaagc
caacctgtcataaattggagactctctgaaattatggtttttgtgattac
tagggtgccctatatatgagacctaaacagatattgaagagtgaaggaga
cgtaatggtatttatctaagtttactatgacccaatactgacttctgtgt
tacagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_75455006_75455833
seq2: B6Ng01-001N08.b_43_870 (reverse)

seq1  CACAGTAATTTTTCTTTTACATTGTTAGGGCACATGCCTAGAAATGAGGG  50
      |||||||||||||   | |||||||| ||||||||||||||| ||| |||
seq2  CACAGTAATTTTT-AATGACATTGTTTGGGCACATGCCTAGACATGTGGG  49

seq1  TATGAAATCCCTG-AAACATGCTGCCAAGGCACTCTCTAAATGCATCTGC  99
      ||||||||||||| |||||||| | ||||||||| |||||||||||  ||
seq2  TATGAAATCCCTGAAAACATGCCGGCAAGGCACTGTCTAAATGCATAGGC  99

seq1  CAGGATGGCAGAGATGGCTCATCAGTAAAGTGCCTTGCTGGGCAAGCATG  149
      |||||| || |||||||||| |||||||||||||||||||||||||||||
seq2  CAGGATAGCTGAGATGGCTCGTCAGTAAAGTGCCTTGCTGGGCAAGCATG  149

seq1  AGGAGCTAAGTTTGGATTCCCAGCATCCGTGGAGAAGCTGGG-CACAGTG  198
      ||||| ||||||| ||||||||||||| ||||||||| |||| |||||||
seq2  AGGAGTTAAGTTTTGATTCCCAGCATCTGTGGAGAAGATGGGACACAGTG  199

seq1  GCCCAGGTCTGTAATTTCAGTTCTGGGAATGGAGTGGGGATGACCCAGAA  248
      ||||||||| ||||| ||||||| ||||||||||||||||||||||||||
seq2  GCCCAGGTCGGTAATGTCAGTTCAGGGAATGGAGTGGGGATGACCCAGAA  249

seq1  GCC-AGACCCCTGGAGCTCATTGGCCTGACAGTTATTGGTAGCATCAGAA  297
      ||| | |||| |||| |||||  || | ||||||||||||||||||||||
seq2  GCCAAAACCCTTGGAACTCATGTGCTTAACAGTTATTGGTAGCATCAGAA  299

seq1  GAGACAAATTCATCCCAGCTAACTACCCATGTTAAATAACTACCCATGTT  347
      ||| ||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  GAGGCAAATTCATCCCAGCTACCTACCCATGTTAAATAATTACCCATGTT  349

seq1  AGCTAACTACCCATGTTAGCTAACTACCCATGTTAGAGTAAATCCTATGG  397
      |||||||||||||||||||||||||||||||||||| ||||||| |||||
seq2  AGCTAACTACCCATGTTAGCTAACTACCCATGTTAGTGTAAATCTTATGG  399

seq1  AATCTCCGTTCCTGCTAAGCTCAGGGTAGAGCTCACAGCACTGGGAGGCT  447
      |||||||||||||| |||||||| |||||||||| ||||| ||||||| |
seq2  AATCTCCGTTCCTGATAAGCTCATGGTAGAGCTCGCAGCAGTGGGAGGTT  449

seq1  GAGTGACACGAAGGCCTCAAACCCCAGAATGAGGCCCTGAGCAACTCTGC  497
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGTGACACGAAGGCCTCAAACCCCAGAATGAGGCCCTGAGCAAGTCTGC  499

seq1  TTTGGAGACCTCTGATCCTGCATGTGGCCTTGGGTACTTGCATTCCTGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGACCTCTGATCCTGCATGTGGCCTTGGGTACTTGCATTCCTGGC  549

seq1  AACTTACTCAGCCACCTACTTGGTGAAATTGTCGCTTTGCACGGCAAATC  597
      |||||||||||||||||||||||||||||||| |||||||||||||| | 
seq2  AACTTACTCAGCCACCTACTTGGTGAAATTGTAGCTTTGCACGGCAATTA  599

seq1  GTGTGGTTGGGTATTCAACGTCAAGAAAGGCTGTGAGATGTGCCAGTCTG  647
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGTGGTTGGGTATTCAAAGTCAAGAAAGGCTGTGAGATGTGCCAGTCTG  649

seq1  ATTCAGAGAGAGAGGTGGGGATGAGGCCAGCAGACCTACTACTGACACTG  697
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTCAGAGAGAGAGGTGGGGATGAGGCCAGCAGACCTACTACTGCCACTG  699

seq1  TGTGATACACACGGACACAATCTCATGTATTTCGAGTGGGTTTCCACATC  747
      | ||||||||||||||||||| |||||||||| |||||||||||||||| 
seq2  TCTGATACACACGGACACAATTTCATGTATTTAGAGTGGGTTTCCACATG  749

seq1  GATGAAAACTCTATAAAGTCGACTCGGTGCTTGTTGAAATGTGAAATTCA  797
      ||||||||||||||||||||||||||||| ||   |||||||||||||||
seq2  GATGAAAACTCTATAAAGTCGACTCGGTGGTT-CCGAAATGTGAAATTCA  798

seq1  TCTTTCTAGAAGATTCAGTTATGTGGAATTC  828
      ||||||||||||||||||||||| |||||||
seq2  TCTTTCTAGAAGATTCAGTTATG-GGAATTC  828

seq1: chr17_75331284_75332354
seq2: B6Ng01-001N08.g_67_1124

seq1  GAATTCACCTAGTGCATGGCTGAAAATGTGCTGGTCTGGGAGCCACCTCA  50
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  GAATTCACCTATTGCATGGTTGAAAATGTGCTGGTCTGGGAGCCACCTCA  50

seq1  AGGTCTGATTTTTGGAGGCTTTTGAAGGCAGATGACATTAGAGGTATGGC  100
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  AGGTCTGATTTTTGGAGGCTTTTGAAGGCAGATGACATTAAAGGTATGGA  100

seq1  TGCATCACCACAATGCACAATGTCTTGAAGAGTGTCTTCCTCGGTGACAA  150
      ||||||||| |||||| || ||||||||| ||||||||||||||||||||
seq2  TGCATCACCCCAATGCGCACTGTCTTGAATAGTGTCTTCCTCGGTGACAA  150

seq1  TGGTTGACAATGAACGTTGCCTCTTTTCTTTTTATGGTCTGATAAACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGACAATGAACGTTGCCTCTTTTCTTTTTATGGTCTGATAAACATG  200

seq1  CTGGCAGTGTTGGGCTCATAGCAAGTGCTTCTTTACCAACAATCCTTGGC  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTGTTGGGCTCATAGCAAGTGCTTCTTTACCAACAATCCTTGGC  250

seq1  TTCGTGATGGGTGATGTCCCGTGAGAGCCATTAGAGGCTGAAAATAGTGC  300
      ||||||||||||||||||||  ||||||||||| |||||||||||| |||
seq2  TTCGTGATGGGTGATGTCCCACGAGAGCCATTAAAGGCTGAAAATACTGC  300

seq1  AAGTGAAAATGAACTGAACGCGTATAGTCTACGAGCACTAGATCAGCTAC  350
      | |||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  AGGTGAAAATGAACTGAACGCGTATAGTCTACAAGCACTAGATCAACTAC  350

seq1  ATCGTGCTTGGCAGTGATGGCTGCTCCATCTCACAGGAGCTTGTCTCATT  400
      |||  ||||||||||||||||| |||||||||||| ||||||||||||||
seq2  ATCAAGCTTGGCAGTGATGGCTACTCCATCTCACAAGAGCTTGTCTCATT  400

seq1  GGAAGCTGTGGTCACTGTCATTGCCCTGTGCCTCAGAGAAGATGGACTTA  450
      |||| |||||||||||||||||||||||||||||| | || |||||||  
seq2  GGAAACTGTGGTCACTGTCATTGCCCTGTGCCTCATAAAACATGGACTCC  450

seq1  GTATCAAGGCTGGAACGATGGTCAGTTGACTTGGCTTGGAAACACCTGGT  500
       | ||||||||||||| || | ||  ||||||||||||||||||||||||
seq2  CTGTCAAGGCTGGAACCATAGGCAAATGACTTGGCTTGGAAACACCTGGT  500

seq1  AGACAAACCCCTGAGTGCATCTGTGGGTATTTCCAGAGAAGTTAAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACCCCTGAGTGCATCTGTGGGTATTTCCAGAGAAGTTAAACTGA  550

seq1  GGAGCAGGAAAGATGTACCCTCAGTACTGGGGGTTCCATCCTGCGGAGGA  600
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  GGAGCAGGAAAGATGTACCCTCAATACTGGGGGTTCCATCCTGCGGACGA  600

seq1  GGGTTCCAGACTGAATAAAGTGTGTGTGTGT-GGGGCAGGACAGGATTGT  649
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  GGGTTCCAGACTGAATAAAGTGTGTGTGTGTGGGGGAAGGACAGGATTGT  650

seq1  AGCCAGCAGAATAGCAGCACTCATTGTTCATTGCTTCTATACTGTGTACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCAGAATAGCAGCACTCATTGTTCATTGCTTCTATACTGTGTACA  700

seq1  CAATGTAACCAACTGCCTCACGTTCCTGCTTTTCTGCAGTAATGGACTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAACCAACTGCCTCACGTTCCTGCTTTTCTGCAGTAATGGACTGT  750

seq1  CTCCCTTCAAACTGTGAGCCAAAACCAACCC-TTCCCCTCTCGCATTGCT  798
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCCCTTCAAACTGTGAGCCAAAACCAACCCTTTCCCCTCTCGCATTGCT  800

seq1  TCTTGCCAGGTAGTTGGTAACAGCAATGAGAACCCATCAGGGAACCAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCAGGTAGTTGGTAACAGCAATGAGAACCCATCAGGGAACCAAAC  850

seq1  TGTAAGATATGGCTGCTGCTCCACACAGACGGCTCTGCTCTGTCAAAAAG  898
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTAAGATATGGCTGCTGCTCCACACAGACGGCTCTGCTCTGTC-AAAAG  899

seq1  CCAACCTGTCATAAATTGGAGACTCTCTGAAAATAATGGTTTTTGTGATT  948
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  CCAACCTGTCATAAATTGGAGACTCTCTG-AAATTATGGTTTTTGTGATT  948

seq1  ACTAGGGTGCCCTATAATATGAGACCTAAAACAAGATATTGAAAGAGTGA  998
      ||||||||||||||| ||||||||||||||   |||||||| ||||||||
seq2  ACTAGGGTGCCCTAT-ATATGAGACCTAAA--CAGATATTG-AAGAGTGA  994

seq1  AGGAGACAGTAAATGGTAATTTATCTAAAAGTTTTACTTATTGACCCAAA  1048
      ||||||| || |||||| ||||||||||    ||||||   |||||| ||
seq2  AGGAGAC-GT-AATGGT-ATTTATCTAA---GTTTACT--ATGACCC-AA  1035

seq1  TACTGACTTCTGTGTTACAGAGA  1071
      |||||||||||||||||||||||
seq2  TACTGACTTCTGTGTTACAGAGA  1058