BAC Information

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BAC

Clone NameB6Ng01-002K19
Chromosome17 (Build37)
Map Location 40,547,206 - 40,628,350
singlet/doubletdoublet
Overlap geneLOC668229
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1
Downstream geneLOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002K19.bB6Ng01-002K19.g
ACCDH840628DH840629
length1,1301,127
definitionDH840628|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K19, 5' end.DH840629|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,627,210 - 40,628,350)(40,547,206 - 40,548,342)
sequence
gaattctgaacagaatttgagctttgttttagattgtgaagtatcttcta
tataatataatcttactgataaaatatagcttacttcatatttatttgaa
aaacactactgttaaaagatttaaaatgtttaatttttactttcccaact
tacttcctattacagcgtaacacaagaatatcaatgttaagaaattaaaa
ttgcacatgaagttacaatttaaggtcagcaattaaatcagagttcacag
tcttctcttgtataaacaaacttgttagataatactcaggtcagctaagt
acaaaatctcagtcaacttaaaaaaatcaaaacatcatggtcagttattt
ttctacaaataggacacaagatacagagactaacacattcaaatagcatg
tcttcgacttcaaaagctctacaagaagcagtactagactacaaatccta
catctactttgtggactttctatgataaaaataatcaaggagagccattc
tctgaggataccctcaccctttcaattggtaacattcaagaacttcaaca
agtatgccctgtgaagttttagggggagtattatactccagaagaggtgg
ttgttggcagaggagaagcaatttgaagtctaaatgtgaaagctgttcta
tttacaaaggtttgtctccaagaacaaatgctttctcagccacttatgtg
aggtttgtaaaagcttacatgatacactgaatctgaacacccagctcagc
cttactcttcttttttatatggagaaatggacttagatttgcatgaaggg
ggactgcaagtgactgagcttgtcacaattcagtcatagatgatggaggg
tctcataagacaaaggctgtctatctctagggaggcagtggcagtggaga
gctttctggagcgggggaagtgaatatcttcaatgatttagtcattgctg
attgcctttgctccagtgatcacttcatcatgtgaagtgatatgtataca
tatatgtgtgtatccatggttaacacatgagcttctaacacaaacaaaag
acatgaagtagagagtgactgttagggagagatttatatttagggcttta
tagggattaatgatgttaagttattgagtg
gaattctatgagaggagtatggaaagtgggacagcctttgggatataaat
aaacaaacaaacaggaaataccttcctggcttgcttccaactcagacata
tggagacattttctcaaatttggttccttcttttctgataactccagctt
gtgccaaagtgacagaaaactaaccagtccagatgaactatcttctgtct
tgacattccagagtgaatttgataacctatcagaagcacttgaatataat
aaattttgtgctcatgttcaagaggctggacctgcaagtcttgttaggaa
tgacatttgtaaaaaaagaactttcatttaccaatggccaactttcaagg
gaaatcagcacaacttggcaaattttggccaaagaaactctattaggttg
tgaattcactattattcaataaatctggcaatatataatttttggcaaaa
atatactcaacatatctgcctctgtttggatagatggacatgtgaatgtg
actatctgttcaggagtaaatccctgggaaaccctctttttctcagaagc
ttttaattgactacagcttaccaggtagatgagagacttcacaagcaact
cagcttccataatgggatttgggctggcttaatcttgtgcaggtctatat
actttacctgatattttccttatagataaagataatgcacactatttgaa
gttttattagctatttgtatttcttcttttgatacctttctgtaccataa
catattttttaattgggctattttgctattgatgtttattttcttgagtt
ctgtgtatattctagacactaatcctggttagataaataactacaaaaac
tacttttctcccattttgtagattaactcttcagtttattaagagtttac
ttcactgtccagaaagttttttggtttcataagatccatctgtcaatttt
ggtttcatttcctgtactattggagtctgtccaaaacatcttactgtgtg
aatgagttgaagtaaagattgtcttctgtttctagctatttcagggtatc
aagtctcatgtaatcaatttttgatctattaagggttgattttgtataag
tgaatgataatatctaggttctttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_40627210_40628350
seq2: B6Ng01-002K19.b_46_1175 (reverse)

seq1  CACTC-ATAACTTACATTCTATTAATTCCCTATATAGCCCTAAATTATAA  49
      ||||| ||||||||   || ||||| |||||||| ||||||||| |||||
seq2  CACTCAATAACTTAACATC-ATTAA-TCCCTATAAAGCCCTAAA-TATAA  47

seq1  ATCCTCTTCCCTAACAGTCACTCTCCTACTTCATGTCTTTTTGGTTTGTT  99
      || ||| ||||||||||||||||| ||||||||||||||||  |||||| 
seq2  AT-CTC-TCCCTAACAGTCACTCT-CTACTTCATGTCTTTT--GTTTGT-  91

seq1  GTTTAGAAGCTCATTGTGTTTAACCATGGATACACACATATATGTATACA  149
        ||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  -GTTAGAAGCTCA-TGTG-TTAACCATGGATACACACATATATGTATACA  138

seq1  TATCACTTCACATGATGAAGTGATCACTGGAGCAAAGGCAAATCAGCAAT  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATCACTTCACATGATGAAGTGATCACTGGAGCAAAGGC-AATCAGCAAT  187

seq1  GACTAAATCATTGAAGATATTCACTTCCCCCGCTCCAG-AAGCTCTCCAC  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GACTAAATCATTGAAGATATTCACTTCCCCCGCTCCAGAAAGCTCTCCAC  237

seq1  TGCCACTGCCTCCCTAGAGATAGACAGCCTTTGTCTTATGAGACCCTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGCCTCCCTAGAGATAGACAGCCTTTGTCTTATGAGACCCTCCA  287

seq1  TCATCTATGACTGAATTGTGACAAGCTCAGTCACTTGCAGTCCCCCTTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTATGACTGAATTGTGACAAGCTCAGTCACTTGCAGTCCCCCTTCA  337

seq1  TGCAAATCTAAGTCCATTTCTCCATATAAAAAAGAAGAGTAAGGCTGAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATCTAAGTCCATTTCTCCATATAAAAAAGAAGAGTAAGGCTGAGC  387

seq1  TGGGTGTTCAGATTCAGTGTATCATGTAAGCTTTTACAAACCTCACATAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTCAGATTCAGTGTATCATGTAAGCTTTTACAAACCTCACATAA  437

seq1  GTGGCTGAGAAAGCATTTGTTCTTGGAGACAAACCTTTGTAAATAGAACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGAGAAAGCATTTGTTCTTGGAGACAAACCTTTGTAAATAGAACA  487

seq1  GCTTTCACATTTAGACTTCAAATTGCTTCTCCTCTGCCAACAACCACCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCACATTTAGACTTCAAATTGCTTCTCCTCTGCCAACAACCACCTC  537

seq1  TTCTGGAGTATAATACTCCCCCTAAAACTTCACAGGGCATACTTGTTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTATAATACTCCCCCTAAAACTTCACAGGGCATACTTGTTGAA  587

seq1  GTTCTTGAATGTTACCAATTGAAAGGGTGAGGGTATCCTCAGAGAATGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGAATGTTACCAATTGAAAGGGTGAGGGTATCCTCAGAGAATGGC  637

seq1  TCTCCTTGATTATTTTTATCATAGAAAGTCCACAAAGTAGATGTAGGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGATTATTTTTATCATAGAAAGTCCACAAAGTAGATGTAGGATT  687

seq1  TGTAGTCTAGTACTGCTTCTTGTAGAGCTTTTGAAGTCGAAGACATGCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTAGTACTGCTTCTTGTAGAGCTTTTGAAGTCGAAGACATGCTA  737

seq1  TTTGAATGTGTTAGTCTCTGTATCTTGTGTCCTATTTGTAGAAAAATAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGTGTTAGTCTCTGTATCTTGTGTCCTATTTGTAGAAAAATAAC  787

seq1  TGACCATGATGTTTTGATTTTTTTAAGTTGACTGAGATTTTGTACTTAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGATGTTTTGATTTTTTTAAGTTGACTGAGATTTTGTACTTAGC  837

seq1  TGACCTGAGTATTATCTAACAAGTTTGTTTATACAAGAGAAGACTGTGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAGTATTATCTAACAAGTTTGTTTATACAAGAGAAGACTGTGAA  887

seq1  CTCTGATTTAATTGCTGACCTTAAATTGTAACTTCATGTGCAATTTTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTTAATTGCTGACCTTAAATTGTAACTTCATGTGCAATTTTAAT  937

seq1  TTCTTAACATTGATATTCTTGTGTTACGCTGTAATAGGAAGTAAGTTGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAACATTGATATTCTTGTGTTACGCTGTAATAGGAAGTAAGTTGGG  987

seq1  AAAGTAAAAATTAAACATTTTAAATCTTTTAACAGTAGTGTTTTTCAAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAAATTAAACATTTTAAATCTTTTAACAGTAGTGTTTTTCAAAT  1037

seq1  AAATATGAAGTAAGCTATATTTTATCAGTAAGATTATATTATATAGAAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAAGTAAGCTATATTTTATCAGTAAGATTATATTATATAGAAGA  1087

seq1  TACTTCACAATCTAAAACAAAGCTCAAATTCTGTTCAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACAATCTAAAACAAAGCTCAAATTCTGTTCAGAATTC  1130

seq1: chr17_40547206_40548342
seq2: B6Ng01-002K19.g_66_1192

seq1  GAATTCTATGAGAGGAGTATGGAAAGTGGGACAGCCTTTGGGATATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAGAGGAGTATGGAAAGTGGGACAGCCTTTGGGATATAAAT  50

seq1  AAACAAACAAACAGGAAATACCTTCCTGGCTTGCTTCCAACTCAGACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAGGAAATACCTTCCTGGCTTGCTTCCAACTCAGACATA  100

seq1  TGGAGACATTTTCTCAAATTTGGTTCCTTCTTTTCTGATAACTCCAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACATTTTCTCAAATTTGGTTCCTTCTTTTCTGATAACTCCAGCTT  150

seq1  GTGCCAAAGTGACAGAAAACTAACCAGTCCAGATGAACTATCTTCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAAGTGACAGAAAACTAACCAGTCCAGATGAACTATCTTCTGTCT  200

seq1  TGACATTCCAGAGTGAATTTGATAACCTATCAGAAGCACTTGAATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCCAGAGTGAATTTGATAACCTATCAGAAGCACTTGAATATAAT  250

seq1  AAATTTTGTGCTCATGTTCAAGAGGCTGGACCTGCAAGTCTTGTTAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGTGCTCATGTTCAAGAGGCTGGACCTGCAAGTCTTGTTAGGAA  300

seq1  TGACATTTGTAAAAAAAGAACTTTCATTTACCAATGGCCAACTTTCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTGTAAAAAAAGAACTTTCATTTACCAATGGCCAACTTTCAAGG  350

seq1  GAAATCAGCACAACTTGGCAAATTTTGGCCAAAGAAACTCTATTAGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGCACAACTTGGCAAATTTTGGCCAAAGAAACTCTATTAGGTTG  400

seq1  TGAATTCACTATTATTCAATAAATCTGGCAATATATAATTTTTGGCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCACTATTATTCAATAAATCTGGCAATATATAATTTTTGGCAAAA  450

seq1  ATATACTCAACATATCTGCCTCTGTTTGGATAGATGGACATGTGAATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTCAACATATCTGCCTCTGTTTGGATAGATGGACATGTGAATGTG  500

seq1  ACTATCTGTTCAGGAGTAAATCCCTGGGAAACCCTCTTTTTCTCAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTGTTCAGGAGTAAATCCCTGGGAAACCCTCTTTTTCTCAGAAGC  550

seq1  TTTTAATTGACTACAGCTTACCAGGTAGATGAGAGACTTCACAAGCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGACTACAGCTTACCAGGTAGATGAGAGACTTCACAAGCAACT  600

seq1  CAGCTTCCATAATGGGATTTGGGCTGGCTTAATCTTGTGCAGGTCTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCATAATGGGATTTGGGCTGGCTTAATCTTGTGCAGGTCTATAT  650

seq1  ACTTTACCTGATATTTTCCTTATAGATAAAGATAATGCACACTATTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCTGATATTTTCCTTATAGATAAAGATAATGCACACTATTTGAA  700

seq1  GTTTTATTAGCTATTTGTATTTCTTCTTTTGATACCTTTCTGTACCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTAGCTATTTGTATTTCTTCTTTTGATACCTTTCTGTACCATAA  750

seq1  CATATTTTTTAATTGGGCTATTTTGCTATTGATGTTTATTTTCTTGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTTAATTGGGCTATTTTGCTATTGATGTTTATTTTCTTGAGTT  800

seq1  CTGTGTATATTCTAGACACTAATCCTGGTTAGATAAATAACTACAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATATTCTAGACACTAATCCTGGTTAGATAAATAACTACAAAAAC  850

seq1  TACTTTTCTCCCATTTTGTAGATTAACTCTTCAGTTTATTAAGAGTTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCTCCCATTTTGTAGATTAACTCTTCAGTTTATTAAGAGTTTAC  900

seq1  TTCACTGTCCAGAAAGTTTTTTGGTTTCATAAGATCCATCTGTCAATTTT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCACTGTCCAGAAAGTTTTTTGGTTTCATAAGATCCATCTGTCAA-TTT  949

seq1  TGGTTTCATTTCCTGTACTATTGGAGTCTTGTTCCAAAACATCTTACTGT  1000
      |||||||||||||||||||||||||||||   ||||||||||||||||| 
seq2  TGGTTTCATTTCCTGTACTATTGGAGTCT--GTCCAAAACATCTTACTG-  996

seq1  TGTGAATGAGTTGAAGTAAAGATTGTTCTTCTGTTTCTAGCTATTTCAGG  1050
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTGAATGAGTTGAAGTAAAGATTG-TCTTCTGTTTCTAGCTATTTCAGG  1045

seq1  GTATCAAGTCTCATGTTAAATCAATTTTTGATCTATTTAGGGTTGAATTT  1100
      ||||||||||||||||  ||||||||||||||||||| ||||||| ||||
seq2  GTATCAAGTCTCATGT--AATCAATTTTTGATCTATTAAGGGTTG-ATTT  1092

seq1  TGTATAAAGTGAATGATAATTATCTAGTTTCTTTTTC  1137
      ||||| ||||||||||||| ||||||| |||||||||
seq2  TGTAT-AAGTGAATGATAA-TATCTAGGTTCTTTTTC  1127