BAC Information

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BAC

Clone NameB6Ng01-002O02
Chromosome17 (Build37)
Map Location 29,911,903 - 30,048,220
singlet/doubletdoublet
Overlap geneMdga1
Upstream geneMapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
Downstream geneLOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8, Glp1r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002O02.bB6Ng01-002O02.g
ACCDH840774DH840775
length987760
definitionDH840774|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O02, 5' end.DH840775|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,047,666 - 30,048,220)(29,911,903 - 29,912,689)
sequence
gaattccacaacatcccgaggtttttcctttttttctttttgcatttcct
ccgaagttcatattcaatcactggaaaaaggcagcgcccgtgacaggatg
gtatttgaagaatggtaacatttgggtctccctgcaaggttagtggtact
atgcatacaaaaaattgccaatttaggggcttattctgcttctaaaagtt
atgttttgagatattgcccacaggatctgcataatgtatactatgcaaat
aaacttattaatatttattttatttggaagattgacttgccgtcggcagc
agacagggcaacaaacacacactgatataacagcaagcgtggtaaggagg
gccttctaatgagaaagccacttcctccctgagcccgccccccatggatg
cctgtccccccacttcaaggatcactgatgtcaaccttcaactccacaca
gtcaggatcctgactcccaccttcaacttcaaaaaagttgaagaaaaggt
ttcctttgaattgtaaacgtccccgtgtggactatgaggctccagttctc
aaggagagggcttttgatacctttccccacttttcagaatttgggggatt
taagacctgggaacaggtcatttcccgagaagcgctaggggagaggctgt
tgtactgtggcttcgggatatttcagatggtacataggaagagccatggg
ggcaggaaatgttcagggcccctcctgttagtctgtagcatggctttcag
gatgtgggctttctcttggcaaagtgaattcggtgtgcctgtctctggac
agaaagcatggctgtgacccaggtctgggaaaggaagtaaagagagggtt
gtactcaagaaagacccctgacttggctgatatccctgttcccatctaga
ctgcggggttcgtcgaaaatggcactgttactcaaggacctatttccagc
gtttcaccttaccttcatttccgtgacctctggggca
gaattcttgcttaggcatcaccagtctctcttggtctcacactgattttg
taagctttgctcctcgtgatgctgaggcagtggctagcttgccagcatcc
ctcctgcatggtttcctgaaggaaccagtgggctatggttcttgatgcct
ttagtctccctgcttcctcttgactgctgcccttcctgtgtccctcacac
tcacagaggcagcagaaagaggagcagaaagagcccttgcacccgggata
gagctctctttgtgccgatttcagaatcccacacctggagcacaatcaag
caggagggaaatctcctagcttgccaattagtaggaaatgccccaaggtt
ctgtctgccccagagagacagggcaggcaagggacagagagttccaaagg
tgggctctcagtctcaggacacacagtgtaggctccagatttccaagtcg
tgcccatgaatgtaaaactcatttctgtgggttcccgaagacttctggca
ggaggacctgccaaggaacaaggttcccagaaaggccagagcgaggtcca
tatactacaggctgagtgagcatgctactgctgtcccaaacgtgcttcct
tgggtcaggagaggactgggatgagggctcaagagaacactgagacagat
tcattagatgaattattaacacggtggacattcaggcagattgatgacag
catttggggtgctaaagagaggatattagggcccatgtgatggaagtggg
ggggggtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_30047666_30048220
seq2: B6Ng01-002O02.b_49_603 (reverse)

seq1  TCCTTGAGAACTGGAGCCTCATAGTCCACACGGGGACGTTTACAATTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGAACTGGAGCCTCATAGTCCACACGGGGACGTTTACAATTCAA  50

seq1  AGGAAACCTTTTCTTCAACTTTTTTGAAGTTGAAGGTGGGAGTCAGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCTTTTCTTCAACTTTTTTGAAGTTGAAGGTGGGAGTCAGGATC  100

seq1  CTGACTGTGTGGAGTTGAAGGTTGACATCAGTGATCCTTGAAGTGGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTGTGGAGTTGAAGGTTGACATCAGTGATCCTTGAAGTGGGGGG  150

seq1  ACAGGCATCCATGGGGGGCGGGCTCAGGGAGGAAGTGGCTTTCTCATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCATCCATGGGGGGCGGGCTCAGGGAGGAAGTGGCTTTCTCATTAG  200

seq1  AAGGCCCTCCTTACCACGCTTGCTGTTATATCAGTGTGTGTTTGTTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTCCTTACCACGCTTGCTGTTATATCAGTGTGTGTTTGTTGCCC  250

seq1  TGTCTGCTGCCGACGGCAAGTCAATCTTCCAAATAAAATAAATATTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGCCGACGGCAAGTCAATCTTCCAAATAAAATAAATATTAATA  300

seq1  AGTTTATTTGCATAGTATACATTATGCAGATCCTGTGGGCAATATCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTGCATAGTATACATTATGCAGATCCTGTGGGCAATATCTCAA  350

seq1  AACATAACTTTTAGAAGCAGAATAAGCCCCTAAATTGGCAATTTTTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAACTTTTAGAAGCAGAATAAGCCCCTAAATTGGCAATTTTTTGTA  400

seq1  TGCATAGTACCACTAACCTTGCAGGGAGACCCAAATGTTACCATTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGTACCACTAACCTTGCAGGGAGACCCAAATGTTACCATTCTTCA  450

seq1  AATACCATCCTGTCACGGGCGCTGCCTTTTTCCAGTGATTGAATATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATCCTGTCACGGGCGCTGCCTTTTTCCAGTGATTGAATATGAAC  500

seq1  TTCGGAGGAAATGCAAAAAGAAAAAAAGGAAAAACCTCGGGATGTTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAGGAAATGCAAAAAGAAAAAAAGGAAAAACCTCGGGATGTTGTGG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555

seq1: chr17_29911903_29912689
seq2: B6Ng01-002O02.g_70_829

seq1  GAATTCTTGCTTAGGCATCACCAGTCTCTCTTGGTCTCACACTGATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTTAGGCATCACCAGTCTCTCTTGGTCTCACACTGATTTTG  50

seq1  TAAGCTTTGCTCCTCGTGATGCTGAGGCAGTGGCTAGCTTGCCAGCATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTGCTCCTCGTGATGCTGAGGCAGTGGCTAGCTTGCCAGCATCC  100

seq1  CTCCTGCATGGTTTCCTGAAGGAACCAGTGGGCTATGGTTCTTGATGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCATGGTTTCCTGAAGGAACCAGTGGGCTATGGTTCTTGATGCCT  150

seq1  TTAGTCTCCCTGCTTCCTCTTGACTGCTGCCCTTCCTGTGTCCCTCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCCCTGCTTCCTCTTGACTGCTGCCCTTCCTGTGTCCCTCACAC  200

seq1  TCACAGAGGCAGCAGAAAGAGGAGCAGAAAGAGCCCTTGCACCCGGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGGCAGCAGAAAGAGGAGCAGAAAGAGCCCTTGCACCCGGGATA  250

seq1  GAGCTCTCTTTGTGCCGATTTCAGAATCCCACACCTGGAGCACAATCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCTTTGTGCCGATTTCAGAATCCCACACCTGGAGCACAATCAAG  300

seq1  CAGGAGGGAAATCTCCTAGCTTGCCAATTAGTAGGAAATGCCCCAAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGGAAATCTCCTAGCTTGCCAATTAGTAGGAAATGCCCCAAGGTT  350

seq1  CTGTCTGCCCCAGAGAGACAGGGCAGGCAAGGGACAGAGAGTTCCAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCCCCAGAGAGACAGGGCAGGCAAGGGACAGAGAGTTCCAAAGG  400

seq1  TGGGCTCTCAGTCTCAGGACACACAGTGTAGGCTCCAGATTTCCAAGTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTCAGTCTCAGGACACACAGTGTAGGCTCCAGATTTCCAAGTCG  450

seq1  TGCCCATGAATGTAAAACTCATTTCTGTGGGTTCCCGAAGACTTCTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGAATGTAAAACTCATTTCTGTGGGTTCCCGAAGACTTCTGGCA  500

seq1  GGAGGACCTGCCAAGGAACAAGGTTCCCAGAAAGGCCAGAGCGAGGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACCTGCCAAGGAACAAGGTTCCCAGAAAGGCCAGAGCGAGGTCCA  550

seq1  TATACTACAGGCTGAGTGAGCATGCTACTGCTGTCCCAAACGTGCTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTACAGGCTGAGTGAGCATGCTACTGCTGTCCCAAACGTGCTTCCT  600

seq1  TGGGTCAGGAGAGGACTGGGATGAGGGCTCAAGAGAACACTGAGACAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAGGAGAGGACTGGGATGAGGGCTCAAGAGAACACTGAGACAGAT  650

seq1  TCATTAGATGAATTATTAACACGGTGGACATTCAGGCAGATTGATGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGATGAATTATTAACACGGTGGACATTCAGGCAGATTGATGACAG  700

seq1  CATTTGGGGTGCTAAAGAGAGGATATTAGGGCCCATGTGATGGAAGT-GG  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATTTGGGGTGCTAAAGAGAGGATATTAGGGCCCATGTGATGGAAGTGGG  750

seq1  GGGGGGTTTCATAGATTTCGGAGGATGGGGGAGGTTTC  787
      ||||||||||                            
seq2  GGGGGGTTTC----------------------------  760