BAC Information

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BAC

Clone NameB6Ng01-002O12
Chromosome17 (Build37)
Map Location 50,079,282 - 50,238,577
singlet/doubletdoublet
Overlap geneRftn1
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1, Daam2, Kif6, EG668470
Downstream geneEG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432, Tbc1d5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002O12.bB6Ng01-002O12.g
ACCDH840790DH840791
length9741,105
definitionDH840790|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O12, 5' end.DH840791|Mus musculus domesticus DNA, BAC clone: B6Ng01-002O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,079,282 - 50,080,249)(50,237,484 - 50,238,577)
sequence
gaattcttccaactgggtcaatgcttatctctgccctctcagtgggaacc
tgtgtgagctgcagccagcattttggagaatcaggcttgccccacccact
tcaggagacagtcctgaagacttctttctctgctcttttcccactctttc
tcctgccagactaggactgttgcccaagactgcacaggttgacaagtgca
cagccctgaagggttcctatccatacaatgtaaagaggcctagcattcag
ggagtcccacaccctccatattcttggtccctctggtgcttaagatcata
taccatggctattttctttgaaaactttcagggttttcccacagtctgag
ggtggacctgagattctacagctgaacatggatatgtggtttagccctgt
catcgcagtgttttaacaaggcaggggcaggaggtctgtgaattcaagga
caggtctacatcagaagatgtctcaaaaacaagaaagttacccaatgcag
cattctctaaatatggacactctgaaagtaggagcaaaggatccagcccg
cctccacggagggcacacatggcatagccaatgaccatgagagtgaggag
ccaccagggtctctgcccaggaggctgctctgtgaaatggcagggcagcc
tgctcagcctcttgctccaaaactccctaccctgagcccaggccaaagtc
ctggatgctagaaagggcagctgggagagcagaactacacactgtgttcc
ccgaggctgcaaaggaccacacagagagcctttcatctgcaaaacctctg
gcttatgtacgtgggggaaactgaggctcagagagagcagggaggcgcct
aaagccaacacagaagttctgcacacttccatgcctcttctttcaaaccg
catcgcagttctctgggcccttttacgaactactatagtccttttcttgg
gtaaaggattgttgaatcccttaa
gaattcagatggtcttaccttaaatcttcctgacaaactttttatttttt
ttatataagtcttttcttctctttgacagtgtgatggactttacgggtgg
tcgtactaattaaacactaattaaattttaagttttcaataagaatacaa
taagaagcaggtgagaaataactttcagtagacatcaatatgatgaatgt
ccttctagtctgtgcaagtgttttatataatactttaaatggttgagaga
tagaccccccctttttttagagtttttttttaaaggtttttttgagacag
ggtttctctgtatagccctggctgtcctggaccctttttcacatagatgt
aaatgctaggaggtggatcattaattttcttcctattcatccaccatgag
ctggaacttaacacggctacaaaaactttaaaatccaaattagaaactca
tattcatacaacacctgtttctgagggtccgagagtcctttgctacattc
ctgtgtgtactgagtatcataattaattctcagtgtatcttaatgatggt
agtttttgttgcaatgttggttgaagacactgttatgtgttcagctaaga
tttcatacataacccatttgtagcaaaaagacattattatttttccctta
ttaccagctttccactttatatcccagaaaagggaagcaggacttattga
tgactttgcggtactgagattggcgtgggtgaaggtcacgtgggagagca
tctaagactctcagtgtagaaagacaccaccttttggcctcacaggccct
gaggcttgtggaagtggccttggggaatcccgggaatccccccaggtctg
tggagggactacagggagcaaggccacgctcacccccaggctggtctcca
cacggaactgctggcacttgactgtgtggaagcttctgaaggtggtcatg
cttctggcttgccagggtctggtcacattctgcaagggataagtgctggg
cccgaatgcatcattgtcctctccactctgtctagtgaacatggtgcggg
tgaaggtccttctgtgtcttgtgaaatgagttgcctttttttttttttta
attga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50079282_50080249
seq2: B6Ng01-002O12.b_47_1020

seq1  GAATTCTTCCAACTGGGTCAATGCTTATCTCTGCCCTCTCAGTGGGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAACTGGGTCAATGCTTATCTCTGCCCTCTCAGTGGGAACC  50

seq1  TGTGTGAGCTGCAGCCAGCATTTTGGAGAATCAGGCTTGCCCCACCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGCTGCAGCCAGCATTTTGGAGAATCAGGCTTGCCCCACCCACT  100

seq1  TCAGGAGACAGTCCTGAAGACTTCTTTCTCTGCTCTTTTCCCACTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGACAGTCCTGAAGACTTCTTTCTCTGCTCTTTTCCCACTCTTTC  150

seq1  TCCTGCCAGACTAGGACTGTTGCCCAAGACTGCACAGGTTGACAAGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCAGACTAGGACTGTTGCCCAAGACTGCACAGGTTGACAAGTGCA  200

seq1  CAGCCCTGAAGGGTTCCTATCCATACAATGTAAAGAGGCCTAGCATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGAAGGGTTCCTATCCATACAATGTAAAGAGGCCTAGCATTCAG  250

seq1  GGAGTCCCACACCCTCCATATTCTTGGTCCCTCTGGTGCTTAAGATCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCACACCCTCCATATTCTTGGTCCCTCTGGTGCTTAAGATCATA  300

seq1  TACCATGGCTATTTTCTTTGAAAACTTTCAGGGTTTTCCCACAGTCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGGCTATTTTCTTTGAAAACTTTCAGGGTTTTCCCACAGTCTGAG  350

seq1  GGTGGACCTGAGATTCTACAGCTGAACATGGATATGTGGTTTAGCCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACCTGAGATTCTACAGCTGAACATGGATATGTGGTTTAGCCCTGT  400

seq1  CATCGCAGTGTTTTAACAAGGCAGGGGCAGGAGGTCTGTGAATTCAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCAGTGTTTTAACAAGGCAGGGGCAGGAGGTCTGTGAATTCAAGGA  450

seq1  CAGGTCTACATCAGAAGATGTCTCAAAAACAAGAAAGTTACCCAATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTACATCAGAAGATGTCTCAAAAACAAGAAAGTTACCCAATGCAG  500

seq1  CATTCTCTAAATATGGACACTCTGAAAGTAGGAGCAAAGGATCCAGCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTAAATATGGACACTCTGAAAGTAGGAGCAAAGGATCCAGCCCG  550

seq1  CCTCCACGGAGGGCACACATGGCATAGCCAATGACCATGAGAGTGAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACGGAGGGCACACATGGCATAGCCAATGACCATGAGAGTGAGGAG  600

seq1  CCACCAGGGTCTCTGCCCAGGAGGCTGCTCTGTGAAATGGCAGGGCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGGTCTCTGCCCAGGAGGCTGCTCTGTGAAATGGCAGGGCAGCC  650

seq1  TGCTCAGCCTCTTGCTCCAAAACTCCCTACCCTGAGCCCAGGCCAAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCTCTTGCTCCAAAACTCCCTACCCTGAGCCCAGGCCAAAGTC  700

seq1  CTGGATGCTAG-AAGGGCAGCTGGGAGAGCAGAACTACACACTGTGTTCC  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGCTAGAAAGGGCAGCTGGGAGAGCAGAACTACACACTGTGTTCC  750

seq1  CCGAGGCTGCAAAGGACCACACAGAGAGCC-TTCATCTGCAAAACCTCTG  798
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCGAGGCTGCAAAGGACCACACAGAGAGCCTTTCATCTGCAAAACCTCTG  800

seq1  GCTTATGTACGTGGGGGAAACTGAGGCCAAGAGAAGAGCAGGGAGGCGCC  848
      |||||||||||||||||||||||||||  |||| ||||||||||||||||
seq2  GCTTATGTACGTGGGGGAAACTGAGGCTCAGAG-AGAGCAGGGAGGCGCC  849

seq1  TAAGGCCAACCACAGAAGTTCTGCACACTTCCATGCCTCTTC-TTCCAAC  897
      ||| ||||| |||||||||||||||||||||||||||||||| ||| |||
seq2  TAAAGCCAA-CACAGAAGTTCTGCACACTTCCATGCCTCTTCTTTCAAAC  898

seq1  CGCATCGCAGCTCTCCTGGCCCTTTAGGGACGAACTA----AGTCC-TTT  942
      |||||||||| ||||  ||||||||    ||||||||    ||||| |||
seq2  CGCATCGCAGTTCTCTGGGCCCTTT---TACGAACTACTATAGTCCTTTT  945

seq1  CTTGGGT--AGGAATGTTG-ATCCCTTAA  968
      |||||||  |||| ||||| |||||||||
seq2  CTTGGGTAAAGGATTGTTGAATCCCTTAA  974

seq1: chr17_50237484_50238577
seq2: B6Ng01-002O12.g_69_1173 (reverse)

seq1  TCAATT-AAAAAAAAAAAAAGGCAACTCA-TTCACAAGACACAGAAGGCA  48
      |||||| |||||||||||||||||||||| ||||||||||||||||||  
seq2  TCAATTAAAAAAAAAAAAAAGGCAACTCATTTCACAAGACACAGAAGGAC  50

seq1  CCTCACCCGCA-CATGTTCACTTAGACAGAGTGGAGA-GACAATGATGCA  96
      | ||||||||| ||||||||| ||||||||||||||| ||||||||||||
seq2  CTTCACCCGCACCATGTTCAC-TAGACAGAGTGGAGAGGACAATGATGCA  99

seq1  TTCGGGCCCAGCAC-TATCCCCTGCAGAATGTGACCAGACCCTGGC-AGC  144
      |||||||||||||| |||||| |||||||||||||||||||||||| |||
seq2  TTCGGGCCCAGCACTTATCCCTTGCAGAATGTGACCAGACCCTGGCAAGC  149

seq1  CAGAGGCATGACCACC-TCAGAAGC-TCCACACAGTC-AGTGCCAGCAGT  191
      |||| ||||||||||| |||||||| ||||||||||| ||||||||||||
seq2  CAGAAGCATGACCACCTTCAGAAGCTTCCACACAGTCAAGTGCCAGCAGT  199

seq1  TCCGTGTGGAGACCAGCCTGGGGGTGAGCGTGGCCTCTGCT-CCTGTAGT  240
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  TCCGTGTGGAGACCAGCCTGGGGGTGAGCGTGGCCT-TGCTCCCTGTAGT  248

seq1  CCCTCCACAGACCTGGGGGGATTCCCGGGATTCCCCAAGGCCACTTCCAC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACAGACCTGGGGGGATTCCCGGGATTCCCCAAGGCCACTTCCAC  298

seq1  AAGCCTCAGGGCCTGTGAGGCC-AAAGGTGGTGTCTTTCTACACTGAGAG  339
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGCCTCAGGGCCTGTGAGGCCAAAAGGTGGTGTCTTTCTACACTGAGAG  348

seq1  TCTTAGGTGCTCTCCCACGTGACCTTCACCCACGCC-ATCTCAGTACCGC  388
      |||||| ||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTTAGATGCTCTCCCACGTGACCTTCACCCACGCCAATCTCAGTACCGC  398

seq1  AAAGTCATCAATAAGTCCTGCTTCCCTTTTCTGGGATATAAAGTGGAAAG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATCAATAAGTCCTGCTTCCCTTTTCTGGGATATAAAGTGGAAAG  448

seq1  CTGGTAATAAGGG-AAAATAATAATGTCTTTTTGCTACAAATGGGTTATG  487
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATAAGGGAAAAATAATAATGTCTTTTTGCTACAAATGGGTTATG  498

seq1  TATGAAATCTTAGCTGAACACATAACAGTGTCTTCAACCAACATTGCAAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATCTTAGCTGAACACATAACAGTGTCTTCAACCAACATTGCAAC  548

seq1  AAAAACTACCATCATTAAGATACACTGAGAATTAATTATGATACTCAGTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTACCATCATTAAGATACACTGAGAATTAATTATGATACTCAGTA  598

seq1  CACACAGGAATGTAGCAAAGGACTCTCGGACCCTCAGAAACAGGTGTTGT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGAATGTAGCAAAGGACTCTCGGACCCTCAGAAACAGGTGTTGT  648

seq1  ATGAATATGAGTTTCTAATTTGGATTTTAAAGTTTTTGTAGCCGTGTTAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATGAGTTTCTAATTTGGATTTTAAAGTTTTTGTAGCCGTGTTAA  698

seq1  GTTCCAGCTCATGGTGGATGAATAGGAAGAAAATTAATGATCCACCTCCT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGCTCATGGTGGATGAATAGGAAGAAAATTAATGATCCACCTCCT  748

seq1  AGCATTTACATCTATGTGAAAAAGGGTCCAGGACAGCCAGGGCTATACAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTACATCTATGTGAAAAAGGGTCCAGGACAGCCAGGGCTATACAG  798

seq1  AGAAACCCTGTCTCAAAAAAACCTTTAAAAAAAAACTCTAAAAAAAGGGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCAAAAAAACCTTTAAAAAAAAACTCTAAAAAAAGGGG  848

seq1  GGGTCTATCTCTCAACCATTTAAAGTATTATATAAAACACTTGCACAGAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTATCTCTCAACCATTTAAAGTATTATATAAAACACTTGCACAGAC  898

seq1  TAGAAGGACATTCATCATATTGATGTCTACTGAAAGTTATTTCTCACCTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGACATTCATCATATTGATGTCTACTGAAAGTTATTTCTCACCTG  948

seq1  CTTCTTATTGTATTCTTATTGAAAACTTAAAATTTAATTAGTGTTTAATT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATTGTATTCTTATTGAAAACTTAAAATTTAATTAGTGTTTAATT  998

seq1  AGTACGACCACCCGTAAAGTCCATCACACTGTCAAAGAGAAGAAAAGACT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGACCACCCGTAAAGTCCATCACACTGTCAAAGAGAAGAAAAGACT  1048

seq1  TATATAAAAAAAATAAAAAGTTTGTCAGGAAGATTTAAGGTAAGACCATC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAAAAAATAAAAAGTTTGTCAGGAAGATTTAAGGTAAGACCATC  1098

seq1  TGAATTC  1094
      |||||||
seq2  TGAATTC  1105