BAC Information

Click to search

BAC

Clone NameB6Ng01-003L24
Chromosome17 (Build37)
Map Location 73,497,627 - 73,656,468
singlet/doubletdoublet
Overlap geneLycat, LOC668709, Capn13
Upstream geneAlk, Ypel5, Lbh
Downstream geneLOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003L24.bB6Ng01-003L24.g
ACCDH841362DH841363
length1,125773
definitionDH841362|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L24, 5' end.DH841363|Mus musculus domesticus DNA, BAC clone: B6Ng01-003L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,497,627 - 73,498,762)(73,655,696 - 73,656,468)
sequence
gaattcttgttacacaaatatgaagttctgtgttggaaagcacacaagct
tttgagtaaagtgcatatgggtttaaattttgactgctttctgccggcta
tgctgtctaggcatttaagtgctttttgaggtcatgttcagctacaaaag
ggagtgctttacccatcttcaagagttgtgataattgtgaagcaaaatat
agtttttatgatagctcttttttgacttttaatgatttctgaaaagactc
atttttaaagcacttgatttaaatagagtcaagtagttcagaaatcaaaa
tgaggaggagggtctgccctattctaagggattttctattgccaaaattt
tgtactggtaattttaaatgaaaatcaaacgagaaaacaaacttccaggc
agtctaagaagttctcaacgcttcagtgagtctggacctgaagcctaaga
gcctggcctgcttttcaggtgaggccacctctgggttagaactgctgtgt
gtttgctcacatgagttttcatgggatctttaaacaaagcctctggatag
gtgagttcccatgtgtctcataaaccttaatgactgcactgtactgccct
gaacagtactggctttccccaccagtgagcagagctatacttatgacaaa
tacttttaaggatattatgactattagttccttttctgcagacctcagaa
ttttttttttaaccaaaggactatttttgtaggtcttcacattaatttct
tcattgatgtttttatttgctaatggtaggagcgtgctacatgaaccatt
tgaaagtacgtggacagagttcctgggtcattctccatctgctccttatt
ttcatttttgctagtgaaagggaaaaagggtcacatatgtattattttta
atagcaagcagatgttccagatataccctgttattatttgtacaaaatag
agtttgtacatgactaaattcagtcattgcttttttttcagaataagtta
taaagaagtgttttattaacagttgcaaggaattttggtgggtgataaat
tcattctgatatgctttggataaatggtataatcatttatgttcaaggac
tatctaatatatgacatgtggagtg
gcaggcagagtggcgcaaatggggtagtgtcttttgtggatcttgaggat
aaagccattcccatctactgggaggggggtaccttctgaggggaccagtc
acgctcacagtgggaaattcccaggcctattatctgttccacatagtagg
aatggggttgggcctccatgctcacttgaagacaggaacaaactttgctc
tccctgggccctttgctatgagattctgtgtctttctctaggacatgttc
ccagtggtcactcgaggaaacggctgtccccatggagctgtgccaacccc
tacggtctgcagctaaacctggtatttgaaatggagtcaaagatgccttc
gaagagcctagactgaggtcctggctgaggcaggctccgatcaaccctag
gtcatcagagcacgtgctgatatcagcaggcacttgcaggaaaacaaaac
aggaaacgttcactcctgctgacattccatccccttcccacactctccct
ggatccatttcttgggaaaaccagtctgatccagtttatgcaccccccag
gtggtgttgctgacccaggaatggtctactcagtgccatttgccaaataa
ccacattcttttgtagctgcagcagagttgtttcacagctaaatggccaa
ataaaatttatttctacgaaaaattcttggtgtgaaagacccttggatct
ggttttaaaagtacaactggggatgggaatgctatgcccaaaaagtagca
cctgctcctcctcctcctccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_73497627_73498762
seq2: B6Ng01-003L24.b_47_1171

seq1  GAATTCTTGTTACACAAATATGAAGTTCTGTGTTGGAAAGCACACAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTACACAAATATGAAGTTCTGTGTTGGAAAGCACACAAGCT  50

seq1  TTTGAGTAAAGTGCATATGGGTTTAAATTTTGACTGCTTTCTGCCGGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTAAAGTGCATATGGGTTTAAATTTTGACTGCTTTCTGCCGGCTA  100

seq1  TGCTGTCTAGGCATTTAAGTGCTTTTTGAGGTCATGTTCAGCTACAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTAGGCATTTAAGTGCTTTTTGAGGTCATGTTCAGCTACAAAAG  150

seq1  GGAGTGCTTTACCCATCTTCAAGAGTTGTGATAATTGTGAAGCAAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGCTTTACCCATCTTCAAGAGTTGTGATAATTGTGAAGCAAAATAT  200

seq1  AGTTTTTATGATAGCTCTTTTTTGACTTTTAATGATTTCTGAAAAGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATGATAGCTCTTTTTTGACTTTTAATGATTTCTGAAAAGACTC  250

seq1  ATTTTTAAAGCACTTGATTTAAATAGAGTCAAGTAGTTCAGAAATCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAGCACTTGATTTAAATAGAGTCAAGTAGTTCAGAAATCAAAA  300

seq1  TGAGGAGGAGGGTCTGCCCTATTCTAAGGGATTTTCTATTGCCAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGAGGGTCTGCCCTATTCTAAGGGATTTTCTATTGCCAAAATTT  350

seq1  TGTACTGGTAATTTTAAATGAAAATCAAACGAGAAAACAAACTTCCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGTAATTTTAAATGAAAATCAAACGAGAAAACAAACTTCCAGGC  400

seq1  AGTCTAAGAAGTTCTCAACGCTTCAGTGAGTCTGGACCTGAAGCCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGAAGTTCTCAACGCTTCAGTGAGTCTGGACCTGAAGCCTAAGA  450

seq1  GCCTGGCCTGCTTTTCAGGTGAGGCCACCTCTGGGTTAGAACTGCTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCTGCTTTTCAGGTGAGGCCACCTCTGGGTTAGAACTGCTGTGT  500

seq1  GTTTGCTCACATGAGTTTTCATGGGATCTTTAAACAAAGCCTCTGGATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTCACATGAGTTTTCATGGGATCTTTAAACAAAGCCTCTGGATAG  550

seq1  GTGAGTTCCCATGTGTCTCATAAACCTTAATGACTGCACTGTACTGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCCATGTGTCTCATAAACCTTAATGACTGCACTGTACTGCCCT  600

seq1  GAACAGTACTGGCTTTCCCCACCAGTGAGCAGAGCTATACTTATGACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTACTGGCTTTCCCCACCAGTGAGCAGAGCTATACTTATGACAAA  650

seq1  TACTTTTAAGGATATTATGACTATTAGTTCCTTTTCTGCAGACCTCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAAGGATATTATGACTATTAGTTCCTTTTCTGCAGACCTCAGAA  700

seq1  -TTTTTTTTTAACCAAAGGACTATTTTTGTAGGTCTTCACATTAATTTCT  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAACCAAAGGACTATTTTTGTAGGTCTTCACATTAATTTCT  750

seq1  TCATTGATGTTTTTATTTGCTAATGGTAGGAGCGTGCTACATGAACCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATGTTTTTATTTGCTAATGGTAGGAGCGTGCTACATGAACCATT  800

seq1  TGAAAGTACGTGGACAGAGTTCCTGGGTCATTCTCCATCTGCTCCTTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTACGTGGACAGAGTTCCTGGGTCATTCTCCATCTGCTCCTTATT  850

seq1  TTCATTTTTGCTAGTGTAAGGGAAAAAGGGTCACATATGTAATA-TTTTA  898
      |||||||||||||||| |||||||||||||||||||||||| || |||||
seq2  TTCATTTTTGCTAGTGAAAGGGAAAAAGGGTCACATATGTATTATTTTTA  900

seq1  ATAGCAAAGCAGATGTTCCAGATATTAACCCTGTTATTATTTGTACAAAA  948
      ||||| |||||||||||||||||||  |||||||||||||||||||||||
seq2  ATAGC-AAGCAGATGTTCCAGATAT--ACCCTGTTATTATTTGTACAAAA  947

seq1  TAGAGTTTGTACATGAACTAAAATCCAGCCATTGCTTTTTTTTTCAGAAT  998
      ||||||||||||||| ||| |||| ||| |||||| ||||||||||||||
seq2  TAGAGTTTGTACATG-ACT-AAATTCAGTCATTGC-TTTTTTTTCAGAAT  994

seq1  AAGTTATAAAGAAGTGTTTTA-TAACAGTTGCAGAGAATTTT-GTGGGTG  1046
      ||||||||||||||||||||| |||||||||||  ||||||| |||||||
seq2  AAGTTATAAAGAAGTGTTTTATTAACAGTTGCAAGGAATTTTGGTGGGTG  1044

seq1  ATAAAATTCAATCTGATATGCTTTGGATAAAAATGGTATAATTCTATTTA  1096
      || ||||||| |||||||||||||||||  ||||||||||||   |||||
seq2  AT-AAATTCATTCTGATATGCTTTGGAT--AAATGGTATAAT--CATTTA  1089

seq1  TGTTACAAGGTACTATCTAATAATTATGACATGTGAAGTG  1136
      |||| ||||| |||||||||||  ||||||||||| ||||
seq2  TGTT-CAAGG-ACTATCTAATA--TATGACATGTGGAGTG  1125

seq1: chr17_73655696_73656468
seq2: B6Ng01-003L24.g_81_853 (reverse)

seq1  GGGGGAGGAGGAGGAGGAGCAGGTGCCTACTTTTT-GGCATAGCATTCCC  49
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  GGGGGAGGAGGAGGAGGAGCAGGTG-CTACTTTTTGGGCATAGCATTCCC  49

seq1  ATCCCCAGTTGTACTTTTAAAACCAGATCCAAGGGTCTTTCACACCAAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGTTGTACTTTTAAAACCAGATCCAAGGGTCTTTCACACCAAGA  99

seq1  ATTTTTCGTAGAAATAAATTTTATTTGGCCATTTAGCTGTGAAACAACTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCGTAGAAATAAATTTTATTTGGCCATTTAGCTGTGAAACAACTC  149

seq1  TGCTGCAGCTACAAAAGAATGTGGTTATTTGGCAAATGGCACTGAGTAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGCTACAAAAGAATGTGGTTATTTGGCAAATGGCACTGAGTAGA  199

seq1  CCATTCCTGGGTCAGCAACACCACCTGGGGGGTGCATAAACTGGATCAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCTGGGTCAGCAACACCACCTGGGGGGTGCATAAACTGGATCAGA  249

seq1  CTGGTTTTCCCAAGAAATGGATCCAGGGAGAGTGTGGGAAGGGGATGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTCCCAAGAAATGGATCCAGGGAGAGTGTGGGAAGGGGATGGAA  299

seq1  TGTCAGCAGGAGTGAACGTTTCCTGTTTTGTTTTCCTGCAAGTGCCTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAGGAGTGAACGTTTCCTGTTTTGTTTTCCTGCAAGTGCCTGCT  349

seq1  GATATCAGCACGTGCTCTGATGACCTAGGGTTGATCGGAGCCTGCCTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAGCACGTGCTCTGATGACCTAGGGTTGATCGGAGCCTGCCTCAG  399

seq1  CCAGGACCTCAGTCTAGGCTCTTCGAAGGCATCTTTGACTCCATTTCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACCTCAGTCTAGGCTCTTCGAAGGCATCTTTGACTCCATTTCAAA  449

seq1  TACCAGGTTTAGCTGCAGACCGTAGGGGTTGGCACAGCTCCATGGGGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGTTTAGCTGCAGACCGTAGGGGTTGGCACAGCTCCATGGGGACA  499

seq1  GCCGTTTCCTCGAGTGACCACTGGGAACATGTCCTAGAGAAAGACACAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTTCCTCGAGTGACCACTGGGAACATGTCCTAGAGAAAGACACAGA  549

seq1  ATCTCATAGCAAAGGGCCCAGGGAGAGCAAAGTTTGTTCCTGTCTTCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATAGCAAAGGGCCCAGGGAGAGCAAAGTTTGTTCCTGTCTTCAAG  599

seq1  TGAGCATGGAGGCCCAACCCCATTCCTACTATGTGGAACAGATAATAGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGGAGGCCCAACCCCATTCCTACTATGTGGAACAGATAATAGGC  649

seq1  CTGGGAATTTCCCACTGTGAGCGTGACTGGTCCCCTCAGAAGGTACCCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATTTCCCACTGTGAGCGTGACTGGTCCCCTCAGAAGGTACCCCC  699

seq1  CTCCCAGTAGATGGGAATGGCTTTATCCTCAAGATCCACAAAAGACACTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTAGATGGGAATGGCTTTATCCTCAAGATCCACAAAAGACACTA  749

seq1  CCCCATTTGCGCCACTCTGCCTGC  773
      ||||||||||||||||||||||||
seq2  CCCCATTTGCGCCACTCTGCCTGC  773