BAC Information

Click to search

BAC

Clone NameB6Ng01-004A14
Chromosome17 (Build37)
Map Location 83,740,253 - 83,888,143
singlet/doubletdoublet
Overlap geneEml4
Upstream geneLOC668836, EG433141, EG625514, LOC100043711, LOC100043900, AW548124, EG545226
Downstream geneCox7a2l, Kcng3, Mta3, Haao, Zfp36l2, Thada
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004A14.bB6Ng01-004A14.g
ACCDH841558DH841559
length3471,143
definitionDH841558|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A14, 5' end.DH841559|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,887,797 - 83,888,143)(83,740,253 - 83,741,412)
sequence
cttagataacatctttttcctcgtgttctgaacagcccacccagaacact
gtgccttccctcgtcccaacctttactgtggtcactgatatttgtcatga
tcacatggctttgcttctgggccaaaggacaggccttccacccagcccaa
catgtacttgccagattggaatctctggtcactgcacatgtcaccttctg
atggaacgcagctgaagccaccacaggtcatgggaaatggtggctttgct
tcccatcagtgggaaaaagttgtgaaaacacagagcacagctagccagac
tctgagatgaagagagagggagggcagagatgggtggtggtggtgga
gaattccacatttgaagccatgcactggagacttcaccaagcctaagtct
gtttaaaacgaaaggcggagtttgtacccactcaagggttctccactgca
aacaacagaaacccactctggctaactcaggcagagaagaaactcactga
gagggtatcaagtggcctgctcgttggcaggaaagttggaagaacagcca
caggaagctggcaagaaaacccaggaagtctagggcacagagagcaaggc
caacttcacctacggacagaagcgggtggggacgctgcgctggtatttgc
tgtggtcgccgccccccaacattatcacggagattcctcgctttctcagt
ccctttttaagctccatgccgctctctcgcttatactatacaaatggctt
aggtcacgtgcctgggccccagctgccaaagataacctctgactcccctc
agcttcccacagaaagaaattaatcgctgtatattttcatcttcattttt
ctcctgtccctagcttcccactttcagtaaatgctaccaccattctttcc
atggccaggaacctgggggaccctcctttatgccttcctccttactcagt
tccgggaggccaccagccaagcgggccagcaagggatctgtgcattgttt
tccttcaccctattttcttctggatgtttctgcaactgctctccggccag
cgacatccctactcaatcctaattggattccacacttccactccctcctc
ccgtttatccacccacaggttaatctccacaaagcagttctttgatcaca
ccactgtttctcaaactgtattgctgagaagtgcttcacctgggcgtcca
cagagttccaggaaacccccaaagacaaaaaggcgaacaggtgccttgag
aagaacttggcctttagaagcaaactgatatgggttcaaattttgatccc
tcccaacccctcccccttttctagtccctacactttcagtcctcttcccg
gtctgaagagtcgaataatgagatcatctcgtggaggcatcgtaagtcat
cactttgaaagtttaatggcggtacacgttgttattagtttgcactcacc
cacaccgatgcttacatgacaatttcactcgaacctgtctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_83887797_83888143
seq2: B6Ng01-004A14.b_52_398 (reverse)

seq1  TCCACCACCACCACCCATCTCTGCCCTCCCTCTCTCTTCATCTCAGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACCACCACCCATCTCTGCCCTCCCTCTCTCTTCATCTCAGAGTC  50

seq1  TGGCTAGCTGTGCTCTGTGTTTTCACAACTTTTTCCCACTGATGGGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGCTGTGCTCTGTGTTTTCACAACTTTTTCCCACTGATGGGAAGC  100

seq1  AAAGCCACCATTTCCCATGACCTGTGGTGGCTTCAGCTGCGTTCCATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACCATTTCCCATGACCTGTGGTGGCTTCAGCTGCGTTCCATCAG  150

seq1  AAGGTGACATGTGCAGTGACCAGAGATTCCAATCTGGCAAGTACATGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACATGTGCAGTGACCAGAGATTCCAATCTGGCAAGTACATGTTG  200

seq1  GGCTGGGTGGAAGGCCTGTCCTTTGGCCCAGAAGCAAAGCCATGTGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTGGAAGGCCTGTCCTTTGGCCCAGAAGCAAAGCCATGTGATCA  250

seq1  TGACAAATATCAGTGACCACAGTAAAGGTTGGGACGAGGGAAGGCACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATATCAGTGACCACAGTAAAGGTTGGGACGAGGGAAGGCACAGT  300

seq1  GTTCTGGGTGGGCTGTTCAGAACACGAGGAAAAAGATGTTATCTAAG  347
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGTGGGCTGTTCAGAACACGAGGAAAAAGATGTTATCTAAG  347

seq1: chr17_83740253_83741412
seq2: B6Ng01-004A14.g_66_1208

seq1  GAATTCCACATTTGAAGCCATGCACTGGAGACTTCACCAAGCCTAAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTTGAAGCCATGCACTGGAGACTTCACCAAGCCTAAGTCT  50

seq1  GTTTAAAACGAAAGGCGGAGTTTGTACCCACTCAAGGGTTCTCCACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAACGAAAGGCGGAGTTTGTACCCACTCAAGGGTTCTCCACTGCA  100

seq1  AACAACAGAAACCCACTCTGGCTAACTCAGGCAGAGAAGAAACTCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGAAACCCACTCTGGCTAACTCAGGCAGAGAAGAAACTCACTGA  150

seq1  GAGGGTATCAAGTGGCCTGCTCGTTGGCAGGAAAGTTGGAAGAACAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTATCAAGTGGCCTGCTCGTTGGCAGGAAAGTTGGAAGAACAGCCA  200

seq1  CAGGAAGCTGGCAAGAAAACCCAGGAAGTCTAGGGCACAGAGAGCAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCTGGCAAGAAAACCCAGGAAGTCTAGGGCACAGAGAGCAAGGC  250

seq1  CAACTTCACCTACGGACAGAAGCGGGTGGGGACGCTGCGCTGGTATTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCACCTACGGACAGAAGCGGGTGGGGACGCTGCGCTGGTATTTGC  300

seq1  TGTGGTCGCCGCCCCCCAACATTATCACGGAGATTCCTCGCTTTCTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCGCCGCCCCCCAACATTATCACGGAGATTCCTCGCTTTCTCAGT  350

seq1  CCCTTTTTAAGCTCCATGCCGCTCTCTCGCTTATACTATACAAATGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTAAGCTCCATGCCGCTCTCTCGCTTATACTATACAAATGGCTT  400

seq1  AGGTCACGTGCCTGGGCCCCAGCTGCCAAAGATAACCTCTGACTCCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACGTGCCTGGGCCCCAGCTGCCAAAGATAACCTCTGACTCCCCTC  450

seq1  AGCTTCCCACAGAAAGAAATTAATCGCTGTATATTTTCATCTTCATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCACAGAAAGAAATTAATCGCTGTATATTTTCATCTTCATTTTT  500

seq1  CTCCTGTCCCTAGCTTCCCACTTTCAGTAAATGCTACCACCATTCTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCCCTAGCTTCCCACTTTCAGTAAATGCTACCACCATTCTTTCC  550

seq1  ATGGCCAGGAACCTGGGGGACCCTCCTTTATGCCTTCCTCCTTACTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAGGAACCTGGGGGACCCTCCTTTATGCCTTCCTCCTTACTCAGT  600

seq1  TCCGGGAGGCCACCAGCCAAGCGGGCCAGCAAGGGATCTGTGCATTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGAGGCCACCAGCCAAGCGGGCCAGCAAGGGATCTGTGCATTGTTT  650

seq1  TCCTTCACCCTATTTTCTTCTGGATGTTTCTGCAACTGCTCTCCGGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACCCTATTTTCTTCTGGATGTTTCTGCAACTGCTCTCCGGCCAG  700

seq1  CGACATCCCTACTCAATCCTAATTGGATTCCACACTTCCACTCCCTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATCCCTACTCAATCCTAATTGGATTCCACACTTCCACTCCCTCCTC  750

seq1  CCGTTTATCCACCCACAGGTTAATCTCCACAAAGCAGTTCTTTGATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTATCCACCCACAGGTTAATCTCCACAAAGCAGTTCTTTGATCACA  800

seq1  CCACTGTTTCTCAAACTGTATTGCTGAGAAGTGCTTCACCTGGGCGTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTTCTCAAACTGTATTGCTGAGAAGTGCTTCACCTGGGCGTCCA  850

seq1  CAGAGTTCCAGGAAACCCCCAAAGACACAAAAGGCGAACAGGTGCCTTGA  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGAGTTCCAGGAAACCCCCAAAGACA-AAAAGGCGAACAGGTGCCTTGA  899

seq1  GAAGAACTTGGCCTTTAGAAGCAAACTGATATGGGTTCAAATTTTGATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTTGGCCTTTAGAAGCAAACTGATATGGGTTCAAATTTTGATCC  949

seq1  CTCCCCAACCCCCTCCCCCCTTTTCTAGTCCCTACACTTTCAGGTTCCTC  1000
      || |||||||||   ||||||||||||||||||||||||||||  |||||
seq2  CT-CCCAACCCC--TCCCCCTTTTCTAGTCCCTACACTTTCAG--TCCTC  994

seq1  TTCCCGGTCTGAAGAGTCGGAATAATGAGATCCATCTCGTGAGGGCATCC  1050
      |||||||||||||||||| |||||||||||| |||||||||  ||||| |
seq2  TTCCCGGTCTGAAGAGTC-GAATAATGAGAT-CATCTCGTGGAGGCAT-C  1041

seq1  GTAAGTCATCACTTTGAAAGTTTAAATGGCGGTACACGTTGTATTTAGGT  1100
      ||||||||||||||||||||||| ||||||||||||||||||  |||| |
seq2  GTAAGTCATCACTTTGAAAGTTT-AATGGCGGTACACGTTGTTATTAGTT  1090

seq1  TGCAACATCACCCACACCGATGCTTACAATGGACAATATTCAACTTCAGA  1150
      ||||   |||||||||||||||||||||   |||||| ||||   ||  |
seq2  TGCA--CTCACCCACACCGATGCTTACA--TGACAAT-TTCA--CTCGAA  1133

seq1  CCTGTCTAGT  1160
      ||||||||||
seq2  CCTGTCTAGT  1143