BAC Information

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BAC

Clone NameB6Ng01-004C14
Chromosome17 (Build37)
Map Location 19,906,630 - 19,907,732
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r-ps117, LOC100042183, EG627367, EG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618
Downstream geneEG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004C14.bB6Ng01-004C14.g
ACCDH841649DH841650
length1,0921,228
definitionDH841649|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C14, 5' end.DH841650|Mus musculus domesticus DNA, BAC clone: B6Ng01-004C14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttctctatctcctgtctcctttctcttctgtctagtgtt
agggtgtgaaactaggggtaattttgtggagaaaaggaaaagaaggatag
aatattgtatctaactttagaatatgaaagggacaaatgtctggaattag
gttgataaggatttttggagatgattgaaattttaatgtcataaagacct
aattagattaataataattaaagagttatacctaagtaatatgtccttgc
caattgctcatcatcaagctgttaaataatttagataagtaacaacctag
acgttttgggtcccacaagaaaatcctttccaaatttcagtgatttagac
agaatattcaatccattagaaggttgaagaaggtgaccactttctaaaaa
aggagtggttctcctatctctgagaagcactacttttgtctcttccatta
atataggacaggtacccattgctatgtcaaactcaatgctggctattaag
acttctctatgattttctggaagacagtttcggtaaattagaattgcact
ttcccctttaattaatggatagactcttgttttttttttttttttttttt
ttttttttttaaattttccctgttttcatgttcactttagttgcctgtta
ccatatagactgtgtccatgattacatatttaatttgataataaaagaac
ttgattttaaaacccttagtttaagtttctacacttataaaaataactat
tataaactgttagtaataattaagaaattcgtgttggaaatcagtcatct
tacaaacgatcaaatcctttagggcatttcagaaattctacttttagcat
ttctcagaattgatgcaatttatttaagcaataagtcctaacattgtctg
ttgtatatgcctttgctgtttgagcttagaatgacctaacaagaaatagc
aaagcttttctgttcagatagacttaagatgaatagttccttacacctcc
agaaaactggaatgtggcgttcatatttttaattcaaaaaaaaaagcttt
tgtgataaagatgccatcagaagccactagaatgtcctccaa
gaattcaagttttatgtttgataccaaattccttacaaaatgaagtaaaa
ctgttgccagtataggatggctcattatctgtcataatgagtttaggcaa
tcccatagcattaaaggcttgtaaacaatgatcaattacatttttagagg
cctctcttgtatgtagagaagcaaaaagaaatcgtttgaaaaggtattat
tagtcacattgcataatttatttcttaatcagaaataagatttgcagcaa
ctgcttaagtataagttctcaagaattcacactattatgtggaaaaaggt
agaaactgagggcactaagaacaaattatgttttgacaatttgacatgca
cattctctaaaaataccaaaatattatcttaagcaattactgttttgatt
atataaagaacgagattatgtggccaattatttttgtgtaaggcctgtaa
tctgcctgaaatataaatctcacatggcattaccttaaggtcttgtccag
gcaatctaggacaaattcttaaatgtccaaaaacagtcttctaaaaagaa
cagcattttttcttatgagttgtatatgcataaaccattgcaaatttgag
aatttatagtatctgagggatgaacaattttaatgtccaaaaacagtctt
ctaaaaagaacatcattttttcttatgagttgtatatgcataaaccattg
caaattttgagaatttatagtatctgagggatgaacaattttaagcaatt
tgtaagctctgagatataatatttgactattaatataaaaattaaagctt
gattattcaacattttaaaacaccatctacagcacacaattttattatct
gtgctgaagcagagactgaaaaaaatgaacatgtgatccattcacatata
attttctcccatagaagggctgttttttaaacacagtaaaatgggatgga
tgcatgttatgaatttatagaaagtaacaaaggcatgcataaaaaacaat
tttcaatgcatcttttgggatagtgatcattaatttttatttaaatgatg
attatgcataggcaaatatcatattctgcaacaacaatttaattgcttgt
tggacaagaaaccatacatttgtcagtttttaagaccagttttcttatag
ttttctaattatgatttaattacaatttatttaggacccagcagcccata
aataggagatgtcaaaaaccttatacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_19906630_19907732
seq2: B6Ng01-004C14.b_47_1138

seq1  GAATTCTTTGTTTCTCTATCTCCTGTCTCCTTTCTCTTCTGTCTAGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTCTCTATCTCCTGTCTCCTTTCTCTTCTGTCTAGTGTT  50

seq1  AGGGTGTGAAACTAGGGGTAATTTTGTGGAGAAAAGGAAAAGAAGGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGAAACTAGGGGTAATTTTGTGGAGAAAAGGAAAAGAAGGATAG  100

seq1  AATATTGTATCTAACTTTAGAATATGAAAGGGACAAATGTCTGGAATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTATCTAACTTTAGAATATGAAAGGGACAAATGTCTGGAATTAG  150

seq1  GTTGATAAGGATTTTTGGAGATGATTGAAATTTTAATGTCATAAAGACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATAAGGATTTTTGGAGATGATTGAAATTTTAATGTCATAAAGACCT  200

seq1  AATTAGATTAATAATAATTAAAGAGTTATACCTAAGTAATATGTCCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATTAATAATAATTAAAGAGTTATACCTAAGTAATATGTCCTTGC  250

seq1  CAATTGCTCATCATCAAGCTGTTAAATAATTTAGATAAGTAACAACCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCTCATCATCAAGCTGTTAAATAATTTAGATAAGTAACAACCTAG  300

seq1  ACGTTTTGGGTCCCACAAGAAAATCCTTTCCAAATTTCAGTGATTTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTGGGTCCCACAAGAAAATCCTTTCCAAATTTCAGTGATTTAGAC  350

seq1  AGAATATTCAATCCATTAGAAGGTTGAAGAAGGTGACCACTTTCTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTCAATCCATTAGAAGGTTGAAGAAGGTGACCACTTTCTAAAAA  400

seq1  AGGAGTGGTTCTCCTATCTCTGAGAAGCACTACTTTTGTCTCTTCCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGTTCTCCTATCTCTGAGAAGCACTACTTTTGTCTCTTCCATTA  450

seq1  ATATAGGACAGGTACCCATTGCTATGTCAAACTCAATGCTGGCTATTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGACAGGTACCCATTGCTATGTCAAACTCAATGCTGGCTATTAAG  500

seq1  ACTTCTCTATGATTTTCTGGAAGACAGTTTCGGTAAATTAGAATTGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTATGATTTTCTGGAAGACAGTTTCGGTAAATTAGAATTGCACT  550

seq1  TTCCCCTTTAATTAATGGATAGACTCTTGTTTTTTTTTTTTTTTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTAATTAATGGATAGACTCTTGTTTTTTTTTTTTTTTTTTTTT  600

seq1  TTTTTTTTTTTAATTTTCCCTGTTTTCATGTTCACTTTAGTTGCCTGTTA  650
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAATTTTCCCTGTTTTCATGTTCACTTTAGTTGCCTGTTA  650

seq1  CCATATAGACTGTGTCCATGATTACATATTTAATTTGATAATAAAAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAGACTGTGTCCATGATTACATATTTAATTTGATAATAAAAGAAC  700

seq1  TTGATTTTAAAACCCTTAGTTTAAGTTTCTACACTTATAAAAATAACTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTAAAACCCTTAGTTTAAGTTTCTACACTTATAAAAATAACTAT  750

seq1  TATAAACTGTTAGTAATAATTAAGAAATTCGTGTTGGAAATCAGTCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTGTTAGTAATAATTAAGAAATTCGTGTTGGAAATCAGTCATCT  800

seq1  TACAAACGATCAAATCCTTTAGGGCA-TTCAGAAATACTAC-TTTAGCCA  848
      |||||||||||||||||||||||||| ||||||||| |||| ||||||  
seq2  TACAAACGATCAAATCCTTTAGGGCATTTCAGAAATTCTACTTTTAGCAT  850

seq1  TTCTCAGAATTGATGCAA-TTAATTAAGCAAATAAGT-CTAACATTGTCT  896
      |||||||||||||||||| ||| |||||| ||||||| ||||||||||||
seq2  TTCTCAGAATTGATGCAATTTATTTAAGC-AATAAGTCCTAACATTGTCT  899

seq1  GTTGTATATG-CTTTGCTGTTTGAGCTTAGAATGA-CTAACAAGAAATAA  944
      |||||||||| |||||||||||||||||||||||| |||||||||||| |
seq2  GTTGTATATGCCTTTGCTGTTTGAGCTTAGAATGACCTAACAAGAAAT-A  948

seq1  GCAAAGCTTTTTCTGTTCAGATAGACTTTAGATAGATAGTTCTTATCAAC  994
      ||||||| |||||||||||||||||||| ||||  ||||||| |  || |
seq2  GCAAAGC-TTTTCTGTTCAGATAGACTTAAGATGAATAGTTCCTTACACC  997

seq1  TACAGAGAACTTGGGAATGTGGCGTTTAAGATATTTTAATTTAAAAAAAA  1044
      | |||| ||||  |||||||||||||    ||||||| | ||  ||||||
seq2  TCCAGAAAACT--GGAATGTGGCGTT---CATATTTTTAATT-CAAAAAA  1041

seq1  AAAAGCTTTTTGTGATAAAGATGCACATCAAGGAAGGCCACACTATGAAT  1094
      |||||| ||||||||||||||||| |||||  ||||    ||||| ||||
seq2  AAAAGC-TTTTGTGATAAAGATGC-CATCA--GAAG---CCACTA-GAAT  1083

seq1  GTCCTCCAA  1103
      |||||||||
seq2  GTCCTCCAA  1092