BAC Information

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BAC

Clone NameB6Ng01-005B03
Chromosome17 (Build37)
Map Location 85,542,922 - 85,689,080
singlet/doubletdoublet
Overlap gene1700106N22Rik
Upstream geneZfp36l2, Thada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901
Downstream geneEG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005B03.bB6Ng01-005B03.g
ACCDH842309DH842310
length372700
definitionDH842309|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B03, 5' end.DH842310|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,688,709 - 85,689,080)(85,542,922 - 85,543,617)
sequence
gaattccttagaacaccgctaaatatacggcattggccatgaatcatcat
gcaactaaaatggtccactgtatacatggacagtctatagtcgctcatgc
gcacacagacacatgcacatgcacaaacatgcacccacagacacgcacac
atgcactcacatatgtgcacacaaacacacagacatgtgcacgcacacac
acacacacacacactcacgatgtccagctactcaaagtgaaaagagcagg
ctagattcaagctaaaacgatgccttaagtttactagcatagttcatact
tggacatacactaaaacttgaatccaaattcttctttcaaacatgtgtgt
cggtgggtgggtgggtgggtgt
gaattcctttctagaaatatgtaaatattttaataactctaacttcattt
tttggggaaggtgttgtataaaaaattaaaaggtgacgttgctactcaaa
gagatagtacaaagaaaagaagacaattaaaacatatcaaggatgctaaa
gatgggcgaacaatgatcctgctgtttataattaaagttttgtaatttaa
tattcataacagacttattgaaggtaaaaacacttgtttttctttgcttt
taaacacttgtttttctcttaaggcattcttattttcttctgctaacaaa
acaagatccaacttaaagcatgtgagtcctgattcatagaacatgctctt
gagatttaaagatttaaagagatttaaaggtctcttgtctctgacttttg
atcatttctattccttgtcaagtttttgattacaaaataatagaaatgga
tactaattttagtcaaaatggaatgtacagagtactggacaaattcctaa
atctgtaggggagaggagaggtgtggttaggaaatgcacaggaactagtg
gaccgggttctggaactttctgccaaggtcagcccgcatttgccgatcac
cctgaccttgagacgcttgtttcccttttctataagcattttgtcacttc
attttttgcttcagctctctttcctcaagactctaggccctcaacttggt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_85688709_85689080
seq2: B6Ng01-005B03.b_43_414 (reverse)

seq1  ACACCCACCCACCCACCCACCGACACACATGTTTGAAAGAAGAATTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACCCACCCACCCACCGACACACATGTTTGAAAGAAGAATTTGGA  50

seq1  TTCAAGTTTTAGTGTATGTCCAAGTATGAACTATGCTAGTAAACTTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTTAGTGTATGTCCAAGTATGAACTATGCTAGTAAACTTAAGG  100

seq1  CATCGTTTTAGCTTGAATCTAGCCTGCTCTTTTCACTTTGAGTAGCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTTTTAGCTTGAATCTAGCCTGCTCTTTTCACTTTGAGTAGCTGGA  150

seq1  CATCGTGAGTGTGTGTGTGTGTGTGTGTGCGTGCACATGTCTGTGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGAGTGTGTGTGTGTGTGTGTGTGCGTGCACATGTCTGTGTGTTT  200

seq1  GTGTGCACATATGTGAGTGCATGTGTGCGTGTCTGTGGGTGCATGTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACATATGTGAGTGCATGTGTGCGTGTCTGTGGGTGCATGTTTGT  250

seq1  GCATGTGCATGTGTCTGTGTGCGCATGAGCGACTATAGACTGTCCATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCATGTGTCTGTGTGCGCATGAGCGACTATAGACTGTCCATGTA  300

seq1  TACAGTGGACCATTTTAGTTGCATGATGATTCATGGCCAATGCCGTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGGACCATTTTAGTTGCATGATGATTCATGGCCAATGCCGTATAT  350

seq1  TTAGCGGTGTTCTAAGGAATTC  372
      ||||||||||||||||||||||
seq2  TTAGCGGTGTTCTAAGGAATTC  372

seq1: chr17_85542922_85543617
seq2: B6Ng01-005B03.g_72_771

seq1  GAATTCCTTTCTAGAAATATGTAAATATTTTAATAACTCTAACTTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTAGAAATATGTAAATATTTTAATAACTCTAACTTCATTT  50

seq1  TTTGGGGAAGGTGTTGTATAAAAAATTAAAAGGTGACGTTGCTACTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGAAGGTGTTGTATAAAAAATTAAAAGGTGACGTTGCTACTCAAA  100

seq1  GAGATAGTACAAAGAAAAGAAGACAATTAAAACATATCAAGGATGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGTACAAAGAAAAGAAGACAATTAAAACATATCAAGGATGCTAAA  150

seq1  GATGGGCGAACAATGATCCTGCTGTTTATAATTAAAGTTTTGTAATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCGAACAATGATCCTGCTGTTTATAATTAAAGTTTTGTAATTTAA  200

seq1  TATTCATAACAGACTTATTGAAGGTAAAAACACTTGTTTTTCTTTGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATAACAGACTTATTGAAGGTAAAAACACTTGTTTTTCTTTGCTTT  250

seq1  TAAACACTTGTTTTTCTCTTAAGGCATTCTTATTTTCTTCTGCTAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTTGTTTTTCTCTTAAGGCATTCTTATTTTCTTCTGCTAACAAA  300

seq1  ACAAGATCCAACTTAAAGCATGTGAGTCCTGATTCATAGAACATGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCCAACTTAAAGCATGTGAGTCCTGATTCATAGAACATGCTCTT  350

seq1  GAGATTTAAAGATTTAAAGAGATTTAAAGGTCTCTTGTCTCTGACTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTAAAGATTTAAAGAGATTTAAAGGTCTCTTGTCTCTGACTTTTG  400

seq1  ATCATTTCTATTCCTTGTCAAGTTTTTGATTACAAAATAATAGAAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTATTCCTTGTCAAGTTTTTGATTACAAAATAATAGAAATGGA  450

seq1  TACTAATTTTAGTCAAAATGGAATGTACAGAGTACTGGACAAATTCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTTTAGTCAAAATGGAATGTACAGAGTACTGGACAAATTCCTAA  500

seq1  ATCTGTAGGGGAGAGGAGAGGTGTGGTTAGGAAATGCACAGGAACTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAGGGGAGAGGAGAGGTGTGGTTAGGAAATGCACAGGAACTAGTG  550

seq1  GACCGGGTTCTGGAAC-TTCTGCCAAGGTCAGCCCGCATTTGCCGATCAC  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACCGGGTTCTGGAACTTTCTGCCAAGGTCAGCCCGCATTTGCCGATCAC  600

seq1  CCTGACCTTGAGACGCTTG-TTCCCCTTTCTATAGTCA-TTTGTCACTTC  647
      ||||||||||||||||||| ||||| ||||||||  || |||||||||||
seq2  CCTGACCTTGAGACGCTTGTTTCCCTTTTCTATAAGCATTTTGTCACTTC  650

seq1  ATTTTTTGCTTCAGCTCTC-TTCCTCAAGACTCAAGGCCCTCAACCTGGT  696
      ||||||||||||||||||| ||||||||||||| ||||||||||| ||||
seq2  ATTTTTTGCTTCAGCTCTCTTTCCTCAAGACTCTAGGCCCTCAACTTGGT  700