BAC Information

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BAC

Clone NameB6Ng01-005G23
Chromosome17 (Build37)
Map Location 44,761,853 - 44,950,599
singlet/doubletdoublet
Overlap geneRunx2, Supt3h
Upstream geneTdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
Downstream gene4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005G23.bB6Ng01-005G23.g
ACCDH842571DH842572
length6951,146
definitionDH842571|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G23, 5' end.DH842572|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,761,853 - 44,762,547)(44,949,459 - 44,950,599)
sequence
gaattcactctactacccatctgacaagtgtgagactctccaatagactc
ctaacaatcctaccaaatgcacccaccatgcttgtcgagaatggtcctca
tttacgaagaaaaagtattaccgttgcagatgaggtaatcaattagcatc
agattcactgtgcaaaacaacacacaggctttcttgctacaaaataaaag
catctaattatttaaccgggggtgtaacacagaccaaaagaaaatgagga
gtaggggttgcatgagttctgggcatccaaactaatctgagtatgagtta
tgtttcttgaagcctactctgtttgcctgcctcacttctaggtaactgtt
ctcaacacgaatggctccaaggtgggttcttctggtacagttttatctga
cctgttataaatcctgtaggaagatttttttttccccaaaaacttctagc
cctgcattctgtaccttacaacttgaactccgaccttattaaaatgtgag
taggaagacttatacactgggttcattttgaaggaaccaaaagatagcaa
agaggaacagaaaggtacaatggatcttcctaaggagaggacaatgcaca
acacaccacctatgatagaagtcatagttttgcaagtccaaagcctacct
gtcaaacagcagcttgtagatctacaagggacgggggaggggggg
gaattctctctaccgcttgaaactatgtcttcagatatctctattagcct
gtttctaaacaattttctgtgactaaatcagacattcaactagaatagaa
gcattttcaagacatcagagctgttctgtaaagatctccagtgcttggga
caatgaatgtacatgaaactgaacttttctaataattttaaatttaattt
tatatctgtagactattgctcccacatagaacttgttacaaacacacagc
aaacactgaaacctctaagattcctttgagcacattcttaaacctaccaa
atgaataccgtttttagtctcacgaaaaataaacttcacaaggataccct
gaaggatttaagaaccatgccgacaaaatcatgctggacttttaaaacaa
aacaaacataatgcagtcccttaatactgaattttcagcaagtgctaata
cagatatgtaaatggcttcaatcctcatcaactgtcacgggagtgtagta
aaatgtccacttacatgattctctgtatgctacccaacatgtcccagcta
cacagcagattgtaaagactgtctttttagcttttaaataaatccttagc
tgcagaattttcaaactagtgattggagttcccattactcctcctcctcc
ttcacacatctcaactggctcctaaaacagggcttgtcttagctcaagtc
aaagagaaataatttaacctaaaaaggggaagtggggggtctcttaaagg
gtaaagaaatatacttcaggtttttattttttaaaataagtgaaatttgc
tacaatgactcccacagtagccaaaagtaggtcatctcagtttacaatat
atgctatgtaataatcatagataaatcataattttcaatagtgggtatag
tattgcttttgaaagctctgccttcaggaagcaggaaatactatggttag
actgcactatatcccaggatagcccacattatacaacagctcacatagga
gatattttattagtagtcactgaagagacagacattaggctacatttaag
cttatttgttccatggaggtaatacttgggggagccgcaatggagccatt
taaacatttcgaactggaggcagaaatatccaaaagaaacgtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_44761853_44762547
seq2: B6Ng01-005G23.b_45_739

seq1  GAATTCACTCTACTACCCATCTGACAAGTGTGAGACTCTCCAATAGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTACTACCCATCTGACAAGTGTGAGACTCTCCAATAGACTC  50

seq1  CTAACAATCCTACCAAATGCACCCACCATGCTTGTCGAGAATGGTCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATCCTACCAAATGCACCCACCATGCTTGTCGAGAATGGTCCTCA  100

seq1  TTTACGAAGAAAAAGTATTACCGTTGCAGATGAGGTAATCAATTAGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGAAGAAAAAGTATTACCGTTGCAGATGAGGTAATCAATTAGCATC  150

seq1  AGATTCACTGTGCAAAACAACACACAGGCTTTCTTGCTACAAAATAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCACTGTGCAAAACAACACACAGGCTTTCTTGCTACAAAATAAAAG  200

seq1  CATCTAATTATTTAACCGGGGGTGTAACACAGACCAAAAGAAAATGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATTATTTAACCGGGGGTGTAACACAGACCAAAAGAAAATGAGGA  250

seq1  GTAGGGGTTGCATGAGTTCTGGGCATCCAAACTAATCTGAGTATGAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGTTGCATGAGTTCTGGGCATCCAAACTAATCTGAGTATGAGTTA  300

seq1  TGTTTCTTGAAGCCTACTCTGTTTGCCTGCCTCACTTCTAGGTAACTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTGAAGCCTACTCTGTTTGCCTGCCTCACTTCTAGGTAACTGTT  350

seq1  CTCAACACGAATGGCTCCAAGGTGGGTTCTTCTGGTACAGTTTTATCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACGAATGGCTCCAAGGTGGGTTCTTCTGGTACAGTTTTATCTGA  400

seq1  CCTGTTATAAATCCTGTAGGAAGATTTTTTTTTCCCCAAAAACTTCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTATAAATCCTGTAGGAAGATTTTTTTTTCCCCAAAAACTTCTAGC  450

seq1  CCTGCATTCTGTACCTTACAACTTGAACTCCGACCTTATTAAAATGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTCTGTACCTTACAACTTGAACTCCGACCTTATTAAAATGTGAG  500

seq1  TAGGAAGACTTATACACTGGGTTCATTTTGAAGGAACCAAAAGATAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGACTTATACACTGGGTTCATTTTGAAGGAACCAAAAGATAGCAA  550

seq1  AGAGGAACAGAAAGGTACAATGGATCTTCCTAAGGAGAGGACAATGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACAGAAAGGTACAATGGATCTTCCTAAGGAGAGGACAATGCACA  600

seq1  ACACACCACCTATGATAGAAGTCATAGTTTTGCAAGTCCAAAGCCTACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCACCTATGATAGAAGTCATAGTTTTGCAAGTCCAAAGCCTACCT  650

seq1  GTCAAACAGCAGCTTGTAGATCTACAAGGGACGGGGGAGGGGGGG  695
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACAGCAGCTTGTAGATCTACAAGGGACGGGGGAGGGGGGG  695

seq1: chr17_44949459_44950599
seq2: B6Ng01-005G23.g_68_1213 (reverse)

seq1  CAACACG-TTCTTT--GACAATTCTGCCTCCAGGTCTGAAATGTTTAACT  47
      ||||||| ||||||  || | |||||||||||| || ||||||||||| |
seq2  CAACACGTTTCTTTTGGATATTTCTGCCTCCAGTTC-GAAATGTTTAAAT  49

seq1  -GCT-CACTGCGGCCTCCCCAAGTATTACCTCCATGGAACAA--TAGCCT  93
       ||| || ||||||  ||||||||||||||||||||||||||   ||| |
seq2  GGCTCCATTGCGGCTCCCCCAAGTATTACCTCCATGGAACAAATAAGCTT  99

seq1  TAATGTAGCCTAATGTTCTTGTCTC-TCAGTGACTACTAATAAATATTCT  142
       |||||||||||||||   |||||| ||||||||||||||||||   |||
seq2  AAATGTAGCCTAATGT--CTGTCTCTTCAGTGACTACTAATAAAATATCT  147

seq1  CCTATGTGAGCTGTTTGTATAATGTGGGCTATCCTGGGATATAGTGCAGT  192
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTATGTGAGCTG-TTGTATAATGTGGGCTATCCTGGGATATAGTGCAGT  196

seq1  CTAACCATAGTTATTTCCTGCTTCCTGAAGGCAGAGCTTTCAAAAGCAAT  242
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTAACCATAG-TATTTCCTGCTTCCTGAAGGCAGAGCTTTCAAAAGCAAT  245

seq1  ACTTATACCCACTATTG-AAATTATGATTTTATCTATGATTATTACATTG  291
      || |||||||||||||| ||||||||| |||||||||||||||||||| |
seq2  AC-TATACCCACTATTGAAAATTATGA-TTTATCTATGATTATTACATAG  293

seq1  CATATATTGT-AACTGAGATGACCTACTTTTGGCTACTGTGGGAGTCATT  340
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATATATTGTAAACTGAGATGACCTACTTTTGGCTACTGTGGGAGTCATT  343

seq1  GTAGC-AATTTCACTTATTTT-AAAAATAAAAACCTGAAGTATATTTCTT  388
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTAGCAAATTTCACTTATTTTAAAAAATAAAAACCTGAAGTATATTTCTT  393

seq1  TACCCTTTAAGAGACCCCCCACTTCCCCTTTTTAGGTTAAATTATTTCTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTAAGAGACCCCCCACTTCCCCTTTTTAGGTTAAATTATTTCTC  443

seq1  TTTGACTTGAGCTAAGACAAGCCCTGTTTTAGGAGCCAGTTGAGATGTGT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTGAGCTAAGACAAGCCCTGTTTTAGGAGCCAGTTGAGATGTGT  493

seq1  GAAGGAGGAGGAGGAGTAATGGGAACTCCAATCACTAGTTTGAAAATTCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGAGGAGGAGTAATGGGAACTCCAATCACTAGTTTGAAAATTCT  543

seq1  GCAGCTAAGGATTTATTTAAAAGCTAAAAAGACAGTCTTTACAATCTGCT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTAAGGATTTATTTAAAAGCTAAAAAGACAGTCTTTACAATCTGCT  593

seq1  GTGTAGCTGGGACATGTTGGGTAGCATACAGAGAATCATGTAAGTGGACA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTGGGACATGTTGGGTAGCATACAGAGAATCATGTAAGTGGACA  643

seq1  TTTTACTACACTCCCGTGACAGTTGATGAGGATTGAAGCCATTTACATAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTACACTCCCGTGACAGTTGATGAGGATTGAAGCCATTTACATAT  693

seq1  CTGTATTAGCACTTGCTGAAAATTCAGTATTAAGGGACTGCATTATGTTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTAGCACTTGCTGAAAATTCAGTATTAAGGGACTGCATTATGTTT  743

seq1  GTTTTGTTTTAAAAGTCCAGCATGATTTTGTCGGCATGGTTCTTAAATCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTAAAAGTCCAGCATGATTTTGTCGGCATGGTTCTTAAATCC  793

seq1  TTCAGGGTATCCTTGTGAAGTTTATTTTTCGTGAGACTAAAAACGGTATT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTATCCTTGTGAAGTTTATTTTTCGTGAGACTAAAAACGGTATT  843

seq1  CATTTGGTAGGTTTAAGAATGTGCTCAAAGGAATCTTAGAGGTTTCAGTG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGTAGGTTTAAGAATGTGCTCAAAGGAATCTTAGAGGTTTCAGTG  893

seq1  TTTGCTGTGTGTTTGTAACAAGTTCTATGTGGGAGCAATAGTCTACAGAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTGTGTTTGTAACAAGTTCTATGTGGGAGCAATAGTCTACAGAT  943

seq1  ATAAAATTAAATTTAAAATTATTAGAAAAGTTCAGTTTCATGTACATTCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAAATTTAAAATTATTAGAAAAGTTCAGTTTCATGTACATTCA  993

seq1  TTGTCCCAAGCACTGGAGATCTTTACAGAACAGCTCTGATGTCTTGAAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCAAGCACTGGAGATCTTTACAGAACAGCTCTGATGTCTTGAAAA  1043

seq1  TGCTTCTATTCTAGTTGAATGTCTGATTTAGTCACAGAAAATTGTTTAGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTATTCTAGTTGAATGTCTGATTTAGTCACAGAAAATTGTTTAGA  1093

seq1  AACAGGCTAATAGAGATATCTGAAGACATAGTTTCAAGCGGTAGAGAGAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTAATAGAGATATCTGAAGACATAGTTTCAAGCGGTAGAGAGAA  1143

seq1  TTC  1141
      |||
seq2  TTC  1146