BAC Information

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BAC

Clone NameB6Ng01-005J21
Chromosome17 (Build37)
Map Location 29,595,408 - 29,777,157
singlet/doubletdoublet
Overlap genePim1, 4933413N12Rik, Tbc1d22b, Rnf8
Upstream gene4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2
Downstream gene1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik, Dnahc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005J21.bB6Ng01-005J21.g
ACCDH842705DH842706
length1,085884
definitionDH842705|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J21, 5' end.DH842706|Mus musculus domesticus DNA, BAC clone: B6Ng01-005J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,595,408 - 29,596,505)(29,776,278 - 29,777,157)
sequence
gaattccactgccttcttcagtcagagactgcctggctctgcattgtttt
tttgttttgttgttttgttttctgactgctttgtaacgtaggaaagaatg
aaagaacacagataggtgtatacgaggctgatctggaactctaggccacc
agagtcacctaggacgggaacccaaagtttataatatggtcctgggaaac
atggtaacagagaacctgggaggcagtgagtgctcagtaagtaccagctt
gatgcccagggggtaaagcatgcctggattcccagcaattagaaagtaga
ggcagaaggatcaagagatggcttagcaagcaaagaagcttgctgttaaa
cctgaggattggagtttaatccctggaccggcgggatgcactcggtgcga
ggagccaactcctgagagttgtgctctgaccgccataggtactgttcgac
aagaacgtacatttcttaaaagttacaaaagtcactctctgctacgcgat
gagttctcagggatccccagctctgcaagaccccatctcaaagaaatcca
aaagtaaatgaatgatctagagtgagaggggtatctgcagattcgacata
aatagaccaaatactgtagacatctgtcaagccaccacttgataatgagg
tggcgagccccaccctcctgcctcacagaagaaccacattattcctggtt
tttcgagacagggtttctctgtgtagcctgggctgtcctgggactcactt
tgtagaccaggctggccttgaactcagaaatccgcttgcctctgcctacc
aagtgctgggataaaggcgtgcgcaaccacacccggtttattcctgcctc
tgaaggcaccatctctttaggtgcttgatgtgggccctgctgagatcacg
tgttgtgggtttctactgttccttacgtcgtgattctccctacccatttc
tcaggcacaacttcaagtccctaccactacagcacccggcccgccccgct
cagcttacgtcctcaacccgtcccccactccatccctgtcgacccctcgt
tatgggaaggcgttcacaagaacctgctcttactc
gaattcaagaagacaactcttactttaatgaagaaaccagacaaatacgt
ctagtaacgtctgttaactcttacctagcaataattttgcaaagtataaa
ttttttaaaaagtcaaaaacaagccgggcagtggtggtgcacacctttaa
tcccagcacttgggaggcagaggcaggcagacttcttagttcaaggacag
cctggtctacaaagtgagttctaggacagccaaggctgtacagagaaacc
ctgtctcgaaaaacaaacaaaacaaaacaaaacaaaaaaattaaaaaaaa
aaaaaatcaaaaccgtccatctgggcatggtggcactaggggaggctgag
acaggtagatctctttgagttagaggttagcttggtctacacagcagacc
ctacctccataaacaatcccagtccttgagtgcaagtttgctgagccgtt
tccttgggcacacagtccataccctacacgttgattttgggtaaacagca
gtctcaggacagggctcagagtctgcaatctaacactctctccggtgagt
tcttcatcagtctgaaggctgctgacccaccaagcaatcctgtcaaggct
ggcttctaagaaaggagctgggcaacatcagatacacttccaggggagcg
gatagacctgtctggagtctgggacccttgctgggttctctgttctctac
accaccttcctttagctaaacaggggtggctgaagtcacaggcaaaggtg
gatcttcctaggagccttcaactcagaacagcccaactcacagatttcac
ggtgccttctctccacatacatcatcaagagcttcaactttagtgttaca
tagcaagggaacagtggtggggggaaggagggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29595408_29596505
seq2: B6Ng01-005J21.b_44_1128

seq1  GAATTCCACTGCCTTCTTCAGTCAGAGACTGCCTGGCTCTGCATTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGCCTTCTTCAGTCAGAGACTGCCTGGCTCTGCATTGTTTT  50

seq1  TTTGTTTTGTTGTTTTGTTTTCTGACTGCTTTGTAACGTAGGAAAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTGTTTTGTTTTCTGACTGCTTTGTAACGTAGGAAAGAATG  100

seq1  AAAGAACACAGATAGGTGTATACGAGGCTGATCTGGAACTCTAGGCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACACAGATAGGTGTATACGAGGCTGATCTGGAACTCTAGGCCACC  150

seq1  AGAGTCACCTAGGACGGGAACCCAAAGTTTATAATATGGTCCTGGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACCTAGGACGGGAACCCAAAGTTTATAATATGGTCCTGGGAAAC  200

seq1  ATGGTAACAGAGAACCTGGGAGGCAGTGAGTGCTCAGTAAGTACCAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAACAGAGAACCTGGGAGGCAGTGAGTGCTCAGTAAGTACCAGCTT  250

seq1  GATGCCCAGGGGGTAAAGCATGCCTGGATTCCCAGCAATTAGAAAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCAGGGGGTAAAGCATGCCTGGATTCCCAGCAATTAGAAAGTAGA  300

seq1  GGCAGAAGGATCAAGAGATGGCTTAGCAAGCAAAGAAGCTTGCTGTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGGATCAAGAGATGGCTTAGCAAGCAAAGAAGCTTGCTGTTAAA  350

seq1  CCTGAGGATTGGAGTTTAATCCCTGGACCGGCGGGATGCACTCGGTGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGATTGGAGTTTAATCCCTGGACCGGCGGGATGCACTCGGTGCGA  400

seq1  GGAGCCAACTCCTGAGAGTTGTGCTCTGACCGCCATAGGTACTGTTCGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAACTCCTGAGAGTTGTGCTCTGACCGCCATAGGTACTGTTCGAC  450

seq1  AAGAACGTACATTTCTTAAAAGTTACAAAAGTCACTCTCTGCTACGCGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGTACATTTCTTAAAAGTTACAAAAGTCACTCTCTGCTACGCGAT  500

seq1  GAGTTCTCAGGGATCCCCAGCTCTGCAAGACCCCATCTCAAAGAAATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCAGGGATCCCCAGCTCTGCAAGACCCCATCTCAAAGAAATCCA  550

seq1  AAAGTAAATGAATGATCTAGAGTGAGAGGGGTATCTGCAGATTCGACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAATGAATGATCTAGAGTGAGAGGGGTATCTGCAGATTCGACATA  600

seq1  AATAGACCAAATACTGTAGACATCTGTCAAGCCACCACTTGATAATGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACCAAATACTGTAGACATCTGTCAAGCCACCACTTGATAATGAGG  650

seq1  TGGCGAGCCCCACCCTCCTGCCTCACAGAAGAACCACATTATTCCTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAGCCCCACCCTCCTGCCTCACAGAAGAACCACATTATTCCTGGTT  700

seq1  TTTCGAGACAGGGTTTCTCTGTGTAGCCTGGGCTGTCCTGGGACTCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGACAGGGTTTCTCTGTGTAGCCTGGGCTGTCCTGGGACTCACTT  750

seq1  TGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCTTGCCTCTGCCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCTTGCCTCTGCCTACC  800

seq1  AAGTGCTGGGATTAAAGGCGTGCGCAACCACACCCGGTTTATTCCTGCCT  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGA-TAAAGGCGTGCGCAACCACACCCGGTTTATTCCTGCCT  849

seq1  CTGAAGGCACCATCTCTTTAGGTGCTTGATGTGGGCCCTGCTGAGATCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCACCATCTCTTTAGGTGCTTGATGTGGGCCCTGCTGAGATCAC  899

seq1  GTGTTGTGGGTTTTCTACTGTTCCTTACGTCGTGATTCTCCCTAACCATT  950
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  GTGTTGTGGG-TTTCTACTGTTCCTTACGTCGTGATTCTCCCTACCCATT  948

seq1  TCTCCAGGCACAACCTTCAAGTCCCTACCACTACAGCACCCCGCCCCGCC  1000
      ||| ||||||||| ||||||||||||||||||||||||||| ||||   |
seq2  TCT-CAGGCACAA-CTTCAAGTCCCTACCACTACAGCACCCGGCCC--GC  994

seq1  CCCGCTCCAGCTGTACCTTCCTCAACCCCTCCCCCCACTCCCATCCCTGT  1050
      |||||| ||||| || | |||||||||| | |||||||| ||||||||||
seq2  CCCGCT-CAGCT-TA-CGTCCTCAACCCGT-CCCCCACT-CCATCCCTGT  1039

seq1  CCGACCCCTCCGTTATGGGATGCGTTTCACAGAAACCTGCCTTTACTC  1098
       |||||||| |||||||||| |   ||||||  |||||||  ||||||
seq2  -CGACCCCT-CGTTATGGGAAGGCGTTCACAAGAACCTGCTCTTACTC  1085

seq1: chr17_29776278_29777157
seq2: B6Ng01-005J21.g_70_953 (reverse)

seq1  AACCCTCCT--CCCCCACCCCTGTTCCCTTGCTATTGTAACACT-AAGTT  47
      |||||||||  |||||||| |||||||||||||| ||||||||| |||||
seq2  AACCCTCCTTCCCCCCACCACTGTTCCCTTGCTA-TGTAACACTAAAGTT  49

seq1  GAAGCTCTTGATGAATGTATGTGGAGAGAAGGCACCGTG-AATCTGTGAG  96
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  GAAGCTCTTGATG-ATGTATGTGGAGAGAAGGCACCGTGAAATCTGTGAG  98

seq1  TTGGGCTGTTCTGAGTTGAAGGCTCCTAGGAAGATCCACC-TTGCCTGTG  145
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGGGCTGTTCTGAGTTGAAGGCTCCTAGGAAGATCCACCTTTGCCTGTG  148

seq1  ACTTCAGCCACCCCTGTTTAGCTAAAGGAAGGTGGTGTAGAGAACAGAGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCCACCCCTGTTTAGCTAAAGGAAGGTGGTGTAGAGAACAGAGA  198

seq1  A-CCAGCAAGGGTCCCAGACTCCAGACAGGTCTATCCGCTCCCCTGGAAG  244
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCAAGGGTCCCAGACTCCAGACAGGTCTATCCGCTCCCCTGGAAG  248

seq1  TGTATCTGATGTTGCCCAGCTCCTTTCTTAGAAGCCAGCCTTGACAGGAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGATGTTGCCCAGCTCCTTTCTTAGAAGCCAGCCTTGACAGGAT  298

seq1  TGCTTGGTGGGTCAGCAGCCTTCAGACTGATGAAGAACTCACCGGAGAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTGGGTCAGCAGCCTTCAGACTGATGAAGAACTCACCGGAGAGA  348

seq1  GTGTTAGATTGCAGACTCTGAGCCCTGTCCTGAGACTGCTGTTTACCCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGATTGCAGACTCTGAGCCCTGTCCTGAGACTGCTGTTTACCCAA  398

seq1  AATCAACGTGTAGGGTATGGACTGTGTGCCCAAGGAAACGGCTCAGCAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACGTGTAGGGTATGGACTGTGTGCCCAAGGAAACGGCTCAGCAAA  448

seq1  CTTGCACTCAAGGACTGGGATTGTTTATGGAGGTAGGGTCTGCTGTGTAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACTCAAGGACTGGGATTGTTTATGGAGGTAGGGTCTGCTGTGTAG  498

seq1  ACCAAGCTAACCTCTAACTCAAAGAGATCTACCTGTCTCAGCCTCCCCTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTAACCTCTAACTCAAAGAGATCTACCTGTCTCAGCCTCCCCTA  548

seq1  GTGCCACCATGCCCAGATGGACGGTTTTGATTTTTTTTTTTTTTAATTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCATGCCCAGATGGACGGTTTTGATTTTTTTTTTTTTTAATTTT  598

seq1  TTTGTTTTGTTTTGTTTTGTTTGTTTTTCGAGACAGGGTTTCTCTGTACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTGTTTGTTTTTCGAGACAGGGTTTCTCTGTACA  648

seq1  GCCTTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCTGTCCTTGAACTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCTGTCCTAGAACTCACTTTGTAGACCAGGCTGTCCTTGAACTA  698

seq1  AGAAGTCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCAC  748

seq1  CACCACTGCCCGGCTTGTTTTTGACTTTTTAAAAAATTTATACTTTGCAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGCCCGGCTTGTTTTTGACTTTTTAAAAAATTTATACTTTGCAA  798

seq1  AATTATTGCTAGGTAAGAGTTAACAGACGTTACTAGACGTATTTGTCTGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGCTAGGTAAGAGTTAACAGACGTTACTAGACGTATTTGTCTGG  848

seq1  TTTCTTCATTAAAGTAAGAGTTGTCTTCTTGAATTC  880
      ||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATTAAAGTAAGAGTTGTCTTCTTGAATTC  884