BAC Information

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BAC

Clone NameB6Ng01-006K23
Chromosome17 (Build37)
Map Location 88,885,961 - 88,886,877
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058, Foxn2
Downstream geneCcdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006K23.bB6Ng01-006K23.g
ACCDH843476DH843477
length914817
definitionDH843476|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K23, 5' end.DH843477|Mus musculus domesticus DNA, BAC clone: B6Ng01-006K23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcccaaagagcagccacggcgggagcgacggtagcgaaggctt
ccacagcgacgaggagacggatgcggaggacgaggaggatcctctgggag
acagtggctacgcaccgcaagctcgtggacacagtactctgaaagggcag
ccaggcaaaaagatcccaaaacagtcctgtcaagagattgatgaggagct
caaagaggcagccgggtcgctgctccaccttgctggaatccgcacctgcc
ttggttccctgataagtactgcgaaggcacagagtcagaagcaccgggaa
aagtagacatgcgcagagtgtgaagttactctaaagttactctaaagtta
ctcttctactcaacttttacagggatgtcagagccatagcggacggacgg
acggacggacctcttcagctgagggtgggggagggggccacttgtttctt
tctaagtctgttttggttgcttttctttttttttgtttaattaatcagtt
gctcttaggatcatgcctaattgtaaatctgacataaatggccccacaat
ttaatttctgtgaataagtgtctcccagatttggaaaattttgtatagga
gaattctcagcctctgtcttaaacttacaggaaaaaaagtcccttttttt
aatcggtaaaaaattggtaactcggacttttcatttttcttcccattctg
ctattaactagttactggcatctttctcacatgcttctctcctgacacac
tgcagaagggtggaatggggatcttttgtctttgttttcacgttactctt
tgttacagcatgagcatagccttttgaattggaaagatcctagatgccta
gaagttctctggtttgtagagaatataactgctctaagattaggaagggc
aatttgggatgtgg
gaattccccttaaagagatagcccctctggctatctatcccttgcttcag
ggaagatgagtggggatgagagccctgggatgtatgcttgttatagtgtg
tgtgtgttttgtgtttggcacatgtgttaggtgcagagtgtgcggtccgc
acttttgccatggtagcgtaggcttttgctgcagtggaggcgggacaatc
tcctcagatttggtttgccgctctaaaagaaattatgctgcgttatgccg
tggggtgcgaggctaagcactgcacagaggatagcttgctgttggcatcc
tgtggaaggcacgtctgattgcatgaaggttcagtgtcctagttcccttc
ccccaggaaaaacgacacgggagctggccaagacctctctgggtgatgag
cctaagagatggttttgtgtagggcccctatgcttgcacactggggatca
gacctctaccttcacccatgaggcttgcttgcagcaattaagatctggct
gtagattaatcaacatcctggccttttgatgcacctgccgcaagcaaaac
acaatctccccaggtgtggcttggcataatagagaggtagtcagtgataa
gactccctgggcatgtcaccaacctaagacagggatcaaaccaatgctgt
tttgtcacccaaggacgggtaaggggcatggctgcggggggctatctaca
gacattctctctgccaaaaaagaaaaaaagggggaattgtggggagcggg
tgtggcggctttcccaaaggcgcccagatactgcagccaaattcattgaa
tttttcccggacttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_88885961_88886877
seq2: B6Ng01-006K23.b_49_962

seq1  GAATTCATCCCAAAGAGCAGCCACGGCGGGAGCGACGGTAGCGAAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCAAAGAGCAGCCACGGCGGGAGCGACGGTAGCGAAGGCTT  50

seq1  CCACAGCGACGAGGAGACGGATGCGGAGGACGAGGAGGATCCTCTGGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCGACGAGGAGACGGATGCGGAGGACGAGGAGGATCCTCTGGGAG  100

seq1  ACAGTGGCTACGCACCGCAAGCTCGTGGACACAGTACTCTGAAAGGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCTACGCACCGCAAGCTCGTGGACACAGTACTCTGAAAGGGCAG  150

seq1  CCAGGCAAAAAGATCCCAAAACAGTCCTGTCAAGAGATTGATGAGGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAAAAAGATCCCAAAACAGTCCTGTCAAGAGATTGATGAGGAGCT  200

seq1  CAAAGAGGCAGCCGGGTCGCTGCTCCACCTTGCTGGAATCCGCACCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGCAGCCGGGTCGCTGCTCCACCTTGCTGGAATCCGCACCTGCC  250

seq1  TTGGTTCCCTGATAAGTACTGCGAAGGCACAGAGTCAGAAGCACCGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCCTGATAAGTACTGCGAAGGCACAGAGTCAGAAGCACCGGGAA  300

seq1  AAGTAGACATGCGCAGAGTGTGAAGTTACTCTAAAGTTACTCTAAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGACATGCGCAGAGTGTGAAGTTACTCTAAAGTTACTCTAAAGTTA  350

seq1  CTCTTCTACTCAACTTTTACAGGGATGTCAGAGCCATAGCGGACGGACGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTACTCAACTTTTACAGGGATGTCAGAGCCATAGCGGACGGACGG  400

seq1  ACGGACGGACCTCTTCAGCTGAGGGTGGGGGAGGGGGCCACTTGTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACGGACCTCTTCAGCTGAGGGTGGGGGAGGGGGCCACTTGTTTCTT  450

seq1  TCTAAGTCTGTTTTGGTTGCTTTTCTTTTTTTTTGTTTAATTAATCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCTGTTTTGGTTGCTTTTCTTTTTTTTTGTTTAATTAATCAGTT  500

seq1  GCTCTTAGGATCATGCCTAATTGTAAATCTGACATAAATGGCCCCACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAGGATCATGCCTAATTGTAAATCTGACATAAATGGCCCCACAAT  550

seq1  TTAATTTCTGTGAATAAGTGTCTCCCAGATTTGGAAAATTTTGTATAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTGTGAATAAGTGTCTCCCAGATTTGGAAAATTTTGTATAGGA  600

seq1  GAATTCTCAGCCTCTGTCTTAAACTTACAGGAAAAAAAGTCCCTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCCTCTGTCTTAAACTTACAGGAAAAAAAGTCCCTTTTTTT  650

seq1  AATCGGTAAAAAATTGGTAACTCGGACTTTTCATTTTTCTTCCCATTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGTAAAAAATTGGTAACTCGGACTTTTCATTTTTCTTCCCATTCTG  700

seq1  CTATTAACTAGTTACTGGCATCTTTCTCACATGCTTCTCTCCTGACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACTAGTTACTGGCATCTTTCTCACATGCTTCTCTCCTGACACAC  750

seq1  TGCAGAAGGGTGGAATGGGGATCTTTTGTCTTTGTTTTCAGGTTACTCTT  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCAGAAGGGTGGAATGGGGATCTTTTGTCTTTGTTTTCACGTTACTCTT  800

seq1  TGTTACAGCATGAGCATAGCCTTTTGAATTGGAAAGATCCTAGATGCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGCATGAGCATAGCCTTTTGAATTGGAAAGATCCTAGATGCCTA  850

seq1  GAAGGTTCTCTGGTTTGTAGAGAATATAACTGCTCTAAGGATTAGGAAAG  900
      ||| |||||||||||||||||||||||||||||||||| ||||||||| |
seq2  GAA-GTTCTCTGGTTTGTAGAGAATATAACTGCTCTAA-GATTAGGAAGG  898

seq1  GCCATTTGGGGATGTGG  917
      || |||| |||||||||
seq2  GCAATTT-GGGATGTGG  914