BAC Information

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BAC

Clone NameB6Ng01-007C03
Chromosome17 (Build37)
Map Location 23,389,462 - 23,520,646
singlet/doubletdoublet
Overlap geneVmn2r-ps133, EG666002, EG638102
Upstream geneEG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261
Downstream geneEG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007C03.bB6Ng01-007C03.g
ACCDH843797DH843798
length1,217571
definitionDH843797|Mus musculus domesticus DNA, BAC clone: B6Ng01-007C03, 5' end.DH843798|Mus musculus domesticus DNA, BAC clone: B6Ng01-007C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,389,462 - 23,390,672)(23,520,072 - 23,520,646)
sequence
gaattctgcatttgtgatgaggtagtgttgagttgataagtattgaactg
gaagatagagtctttcctacatgtaaaggctttacaaacactgaaaatat
tgtgagaaccatttatatcatatatattacaatctgatgatgggaatctg
tgtgataaatcagaaaattcctaattcttacactctcaatttgcatcctt
tgtcattattgaggtccatgatgaatacacaaaataggcttttcttctga
tccccacacattcaattaagtacacgtatccatgttttagtgtttttgtt
ttttgaagaagattctcacaatgtagcgttagtagacatcaactccctat
gtagaacaaactgacatagagttcacaaagatctatctctctgcctcgac
aatgcctaggttaaagtagtgtacttcaagttttctcatttctttgcttt
ttttctttattgcttgccaaacattgctttggtcttaagtactattttgg
tgaaatgtaaaaaaaaatgtatatctttacaaaattttggtttatttcat
ttgagacagtgcctccatacaaagccttggctgacttgtattcactatat
aggcctaatctggccaaaaagagacatagatatgcctgcctttgcctcca
cagaattagcataaaggcatacaacataacacatacttggcctcatttct
gattatacttgaaattctttgattttctttccatgtaatacaatattggc
aatagatttagatttaataagctaatcttgttgcttttctgatttggtaa
aaaaaagtggagattaacatttaattattactgaaatttttgttaattat
tgtccacttattgatattaaaatatttaatacttttctaatacatatatt
tgtgcctggtattgcagtggtgaccatatattccttgaccaatctttaaa
tatcttccatagttgtcatgaatcctctataatttgcttattaatgatcc
ttgttctgtataggtattcatcagcttatcctagagtggtagaatggatc
tcttatctatgtatatccatctctatcctattgtatgtattctatctata
aaaactggttgtgattaaatacattctttcttgctttagagagatccata
tcaagagattcatggtaatctcaaagaagtcttttatatatatataggct
ctgccttgcagcctaca
ccacaattagtatcttctaaactaatacttaagtggcaaatgaacctgtg
tttaatgagtaaaatagtcttatatagttttccttgtcatctattcttca
taatattttagaacccgtactgtcagtgggagagtttattgataattgag
gtaagatgattctatgtggatatggaatggatttaaagcagcacaaatat
aggcaactctctgttctgtgttgtggtacgtcatatttggcatttaagat
gaagcaaataggacctacttattttctaaattttcttgaaatgttgaaat
atcaaaaatttccacatccacgatctagaacctccctcctctgaggctaa
aatatgcatatagagagatatgagatgaagaatttttttcccataggaga
gtaaaggagtttccaaactggcttcacatgctactccatccccatatcct
ttgggtgtttttcaattctcaaaaatacttctcctacttactttcatgtt
taaatgtgtgtatatacacacaaatacatacatatatccttttactgact
tttgtatatggaatgtaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23389462_23390672
seq2: B6Ng01-007C03.b_48_1264

seq1  GAATTCTGCATTTGTGATGAGGTAGTGTTGAGTTGATAAGTATTGAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATTTGTGATGAGGTAGTGTTGAGTTGATAAGTATTGAACTG  50

seq1  GAAGATAGAGTCTTTCCTACATGTAAAGGCTTTACAAACACTGAAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAGAGTCTTTCCTACATGTAAAGGCTTTACAAACACTGAAAATAT  100

seq1  TGTGAGAACCATTTATATCATATATATTACAATCTGATGATGGGAATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAACCATTTATATCATATATATTACAATCTGATGATGGGAATCTG  150

seq1  TGTGATAAATCAGAAAATTCCTAATTCTTACACTCTCAATTTGCATCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAATCAGAAAATTCCTAATTCTTACACTCTCAATTTGCATCCTT  200

seq1  TGTCATTATTGAGGTCCATGATGAATACACAAAATAGGCTTTTCTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTATTGAGGTCCATGATGAATACACAAAATAGGCTTTTCTTCTGA  250

seq1  TCCCCACACATTCAATTAAGTACACGTATCCATGTTTTAGTGTTTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACACATTCAATTAAGTACACGTATCCATGTTTTAGTGTTTTTGTT  300

seq1  TTTTGAAGAAGATTCTCACAATGTAGCGTTAGTAGACATCAACTCCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGAAGATTCTCACAATGTAGCGTTAGTAGACATCAACTCCCTAT  350

seq1  GTAGAACAAACTGACATAGAGTTCACAAAGATCTATCTCTCTGCCTCGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACAAACTGACATAGAGTTCACAAAGATCTATCTCTCTGCCTCGAC  400

seq1  AATGCCTAGGTTAAAGTAGTGTACTTCAAGTTTTCTCATTTCTTTGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTAGGTTAAAGTAGTGTACTTCAAGTTTTCTCATTTCTTTGCTTT  450

seq1  TTTTCTTTATTGCTTGCCAAACATTGCTTTGGTCTTAAGTACTATTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATTGCTTGCCAAACATTGCTTTGGTCTTAAGTACTATTTTGG  500

seq1  TGAAATGTAAAAAAAAATGTATATCTTTACAAAATTTTGGTTTATTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTAAAAAAAAATGTATATCTTTACAAAATTTTGGTTTATTTCAT  550

seq1  TTGAGACAGTGCCTCCATACAAAGCCTTGGCTGACTTGTATTCACTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGTGCCTCCATACAAAGCCTTGGCTGACTTGTATTCACTATAT  600

seq1  AGGCCTAATCTGGCCAAAAAGAGACATAGATATGCCTGCCTTTGCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAATCTGGCCAAAAAGAGACATAGATATGCCTGCCTTTGCCTCCA  650

seq1  CAGAATTAGCATAAAGGCATACAACATAACACATACTTGGCCTCATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTAGCATAAAGGCATACAACATAACACATACTTGGCCTCATTTCT  700

seq1  GATTATACTTGAAATTCTTTGATTTTCTTTCCATGTAATACAATATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATACTTGAAATTCTTTGATTTTCTTTCCATGTAATACAATATTGGC  750

seq1  AATAGATTTAGATTTAATAAGCTAATCTTGTTGCTTTTCTGATTTGGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTTAGATTTAATAAGCTAATCTTGTTGCTTTTCTGATTTGGTAA  800

seq1  AAAAAAGTGGAGATTAACATTTAATTATTACTGAAATTTTTGTTAATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTGGAGATTAACATTTAATTATTACTGAAATTTTTGTTAATTAT  850

seq1  TGTCCACTTATTGATATTAAAATATTTAATACTTTTCTAATACATATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACTTATTGATATTAAAATATTTAATACTTTTCTAATACATATATT  900

seq1  TGTGCCTGGTATTGCAGTGGTGACCATATATTCCTTGACCAATCTTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGGTATTGCAGTGGTGACCATATATTCCTTGACCAATCTTTAAA  950

seq1  TATCTTCCATAGTTGTCATGAAT-CTCTATAATTTGCTTATTAATGATCC  999
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATCTTCCATAGTTGTCATGAATCCTCTATAATTTGCTTATTAATGATCC  1000

seq1  TTGTTCTGTATAGGTATTCATCAGGTTTATCTAGAGTGGTAGAATGAATC  1049
      |||||||||||||||||||||||| ||   |||||||||||||||| |||
seq2  TTGTTCTGTATAGGTATTCATCAGCTTATCCTAGAGTGGTAGAATGGATC  1050

seq1  TCTATATCTATGTATAT-CATCTCTAT-CTA-TGTATGTA-TCTATCTAT  1095
      ||| ||||||||||||| ||||||||| ||| |||||||| |||||||||
seq2  TCT-TATCTATGTATATCCATCTCTATCCTATTGTATGTATTCTATCTAT  1099

seq1  AAAATCTGTTTGT-ATTACAT-CACTCTTCTCTCTCCTTTTAAGAGATTC  1143
      |||| ||| |||| |||| || || |||| ||| | ||||  |||||| |
seq2  AAAAACTGGTTGTGATTAAATACATTCTT-TCT-TGCTTTAGAGAGATCC  1147

seq1  AATGCAAGA-ATCTACTGTTATC-CAAAGAAAGTC-TTTATATATA-ATA  1189
      |   ||||| ||  |  || ||| ||||| ||||| |||||||||| |||
seq2  ATATCAAGAGATTCATGGTAATCTCAAAG-AAGTCTTTTATATATATATA  1196

seq1  GGCGTCTGTCTTGCAGCCTACA  1211
      ||| |||| |||||||||||||
seq2  GGC-TCTGCCTTGCAGCCTACA  1217

seq1: chr17_23520072_23520646
seq2: B6Ng01-007C03.g_66_642 (reverse)

seq1  AAGTTACATTCCATATACAAAAGTCAGTAAAAGGATATATGTATGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACATTCCATATACAAAAGTCAGTAAAAGGATATATGTATGTATTT  50

seq1  GTGTGTATATACACACATTTAAACATG-AAGTAAGTAGGAGAAGTATTTT  99
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGTGTATATACACACATTTAAACATGAAAGTAAGTAGGAGAAGTATTTT  100

seq1  TGAGAATTG-AAAACACCCAAAGGATATGGGGATGGAGTAGCATGTGAAG  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTGAAAAACACCCAAAGGATATGGGGATGGAGTAGCATGTGAAG  150

seq1  CCAGTTTGGAAACTCCTTTACTCTCCTATGGGAAAAAAATTCTTCATCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGGAAACTCCTTTACTCTCCTATGGGAAAAAAATTCTTCATCTC  200

seq1  ATATCTCTCTATATGCATATTTTAGCCTCAGAGGAGGGAGGTTCTAGATC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTCTATATGCATATTTTAGCCTCAGAGGAGGGAGGTTCTAGATC  250

seq1  GTGGATGTGGAAATTTTTGATATTTCAACATTTCAAGAAAATTTAGAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGTGGAAATTTTTGATATTTCAACATTTCAAGAAAATTTAGAAAA  300

seq1  TAAGTAGGTCCTATTTGCTTCATCTTAAATGCCAAATATGACGTACCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGGTCCTATTTGCTTCATCTTAAATGCCAAATATGACGTACCACA  350

seq1  ACACAGAACAGAGAGTTGCCTATATTTGTGCTGCTTTAAATCCATTCCAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAACAGAGAGTTGCCTATATTTGTGCTGCTTTAAATCCATTCCAT  400

seq1  ATCCACATAGAATCATCTTACCTCAATTATCAATAAACTCTCCCACTGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATAGAATCATCTTACCTCAATTATCAATAAACTCTCCCACTGAC  450

seq1  AGTACGGGTTCTAAAATATTATGAAGAATAGATGACAAGGAAAACTATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGGGTTCTAAAATATTATGAAGAATAGATGACAAGGAAAACTATAT  500

seq1  AAGACTATTTTACTCATTAAACACAGGTTCATTTGCCACTTAAGTATTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATTTTACTCATTAAACACAGGTTCATTTGCCACTTAAGTATTAG  550

seq1  TTTAGAAGATACTAATTGTGGGAATTC  575
      |||||||||||||||||||||||||||
seq2  TTTAGAAGATACTAATTGTGGGAATTC  577