BAC Information

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BAC

Clone NameB6Ng01-007K14
ChromosomeX (Build37)17 (Build37)
Map Location 9,343,271 - 9,343,39689,497,169 - 89,498,129
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSsxb5, LOC625480, EG436188, B630019K06Rik, LOC100009698, LOC436189, LOC673817, LOC331380, EG434726, LOC100043940, EG434727, LOC436190, LOC100042782, EG668980, Fthl17, LOC100043942, EG434728, LOC100043943, LOC385316, EG434729, LOC100043944, LOC628008, 4930402K13Rik, EG436193, Lancl3, Xk, 1700012L04Rik, EG628040, LOC100042834, LOC100042839, Rp23-423l11.5, Cybb, EG333452, LOC100042867, Dynlt3
Downstream gene1700054O13Rik, 4930557A04Rik, Sytl5, LOC436194, Srpx, Rpgr, Otc, 4933416E14Rik, Tspan7, EG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007K14.bB6Ng01-007K14.g
ACCDH844161DH844162
length535961
definitionDH844161|Mus musculus domesticus DNA, BAC clone: B6Ng01-007K14, 5' end.DH844162|Mus musculus domesticus DNA, BAC clone: B6Ng01-007K14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,343,271 - 9,343,396)(89,497,169 - 89,498,129)
sequence
tgctcgaaagccatctggttctgggctttaaaattttttttttaatcttt
ggttgttagacttctaataactgcttctatttcactagaaattataagtt
tgtttaattttttatctgattttgatttaattttggaaagtggtatatat
caagacaatcacccatttattttagatttttcagtttggtggagtacagg
tttttaaagtgtgtctttatgattctcttgattttctcagtgtctgtttt
tatgtgccccctctttttcctctaattttgttaattcttgggtatgggtt
tgtcgatcttatttacatttctcaaaaaaccaagttcttaatttttattt
gtatttttgcctatttttttgattttggtcctgagcttaattattttttt
gacatctattgtttttggatgtgatttcttctttttattctagagctttc
aagtgtgctgctaatttactagtaggagatctcttttttcccttttcttt
ttcttctttttcccctcctccccctccccttctcc
gaattccaagatttattgctttgcttccttgtcaggtgctagtgttctgt
aaacctgtgtagagaaagctgcaatgttccagagactggtgagatgacaa
ctcaaaataaaattcctgccactgtagaactctcacactacttatgggga
gaagacaattatgtgaacatgcaggaaaatacacagattgtagaacatac
tagaagtaccacaaagaaaattataatcaggaaaggaaaccaagggatat
gtcagggggattatcattttacataaagaggtccaaaaaaaaaaaaaaag
gaaggaaggaaggaaggaaggaaggaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaactag
ctgagaatgttgagaggatggcagataagggagccagatggaagataggt
agcttgatgagaggatgaatctgaatatagtacctaagacatgcactgta
aactcttgctattaattagactgtttatgaaactttggaggaaaaaaaaa
gaggttcgaggtcctagggaacagaaaataggaagctccttcgggcttct
gaatgccactgtaaataatttggatttttccctgaatgaggtgtggagca
ggagctgatggaagctggtttttttgcaggagtgatacagatatttcaaa
caaaagaaatgtcaaaaactggagatggctgacactaagagagaagactt
cataaatgggggaaatgatggcatgtttttatatcagtggcagaatttca
gcaaagaaggagaaatagaagcaagaaatgctaagaatgaaaaggtgtca
tttgatgtagtggttcccaggacagagatgaaaagatggagtgtagatgg
taaggctgttcctaggcaagatcctggaaaagcttacctgttgtactagg
tggggtgccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_9343271_9343396
seq2: B6Ng01-007K14.b_539_584

seq1  CCCTTTTCTTTTTCTTTTTTTCTTTTTCTTCACTAATTTATTTATTTATT  50
      ||||||||||||||     |||||||||                      
seq2  CCCTTTTCTTTTTC-----TTCTTTTTC----------------------  23

seq1  CATTTTCCATTCTGATTGCTGCGTTTCTCCCAGTCCACCCTCACAGAGTC  100
                                           ||||         
seq2  -------------------------------------CCCT---------  27

seq1  ACTATCCCCTTCCCCTCCCCTTCTCC  126
             ||| |||||||||||||||
seq2  -------CCTCCCCCTCCCCTTCTCC  46

seq1: chr17_89497169_89498129
seq2: B6Ng01-007K14.g_69_1029 (reverse)

seq1  CTGGCAACCCACCTAGTACCACAGGTAAGC-TCTCCAGGATCCTGCCTAA  49
      |||||| |||||||||||| |||||||||| | ||||||||| |||||| 
seq2  CTGGCACCCCACCTAGTACAACAGGTAAGCTTTTCCAGGATCTTGCCTAG  50

seq1  GAACAGCCCTTCCCATCTACACTCCATCTTTTCATCTCTGTCCTGGGAAA  99
      |||||| |||| ||||||||||||||||||||||||||||||||||| ||
seq2  GAACAG-CCTTACCATCTACACTCCATCTTTTCATCTCTGTCCTGGG-AA  98

seq1  CCACTACATCAAATGACACCTTTTCATTCTTAGCATTTCTTGCTTCTATT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACATCAAATGACACCTTTTCATTCTTAGCATTTCTTGCTTCTATT  148

seq1  TCTCCTTCTTTGCTG-AATTCTGCCACTGATATAAAAACATGCCATCATT  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCTTTGCTGAAATTCTGCCACTGATATAAAAACATGCCATCATT  198

seq1  TCCCCCATTTATGAAGTCTTCTCTCTTAGTGTCAGCCATCTCCAGTTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATTTATGAAGTCTTCTCTCTTAGTGTCAGCCATCTCCAGTTTTT  248

seq1  GACATTTCTTTTGTTTGAAATATCTGTATCACTCCTGCAAAAAAACCAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTCTTTTGTTTGAAATATCTGTATCACTCCTGCAAAAAAACCAGC  298

seq1  TTCCATCAGCTCCTGCTCCACACCTCATTCAGGGAAAAATCCAAATTATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAGCTCCTGCTCCACACCTCATTCAGGGAAAAATCCAAATTATT  348

seq1  TACAGTGGCATTCAGAAGCCCGAAGGAGCTTCCTATTTTCTGTTCCCTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGGCATTCAGAAGCCCGAAGGAGCTTCCTATTTTCTGTTCCCTAG  398

seq1  GACCTCGAACCTCTTTTTTTTTCCTCCAAAGTTTCATAAACAGTCTAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCGAACCTCTTTTTTTTTCCTCCAAAGTTTCATAAACAGTCTAATT  448

seq1  AATAGCAAGAGTTTACAGTGCATGTCTTAGGTACTATATTCAGATTCATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAGAGTTTACAGTGCATGTCTTAGGTACTATATTCAGATTCATC  498

seq1  CTCTCATCAAGCTACCTATCTTCCATCTGGCTCCCTTATCTGCCATCCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCAAGCTACCTATCTTCCATCTGGCTCCCTTATCTGCCATCCTC  548

seq1  TCAACATTCTCAGCTAGTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTCTCAGCTAGTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  598

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTT  648

seq1  CCTTCCTTCCTTCCTTTTTTTTTTTTTTTGGACCTCTTTATGTAAAATGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTTTTTTTTTTTTTTGGACCTCTTTATGTAAAATGA  698

seq1  TAATCCCCCTGACATATCCCTTGGTTTCCTTTCCTGATTATAATTTTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCCCTGACATATCCCTTGGTTTCCTTTCCTGATTATAATTTTCTT  748

seq1  TGTGGTACTTCTAGTATGTTCTACAATCTGTGTATTTTCCTGCATGTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTACTTCTAGTATGTTCTACAATCTGTGTATTTTCCTGCATGTTCA  798

seq1  CATAATTGTCTTCTCCCCATAAGTAGTGTGAGAGTTCTACAGTGGCAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTGTCTTCTCCCCATAAGTAGTGTGAGAGTTCTACAGTGGCAGGA  848

seq1  ATTTTATTTTGAGTTGTCATCTCACCAGTCTCTGGAACATTGCAGCTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTGAGTTGTCATCTCACCAGTCTCTGGAACATTGCAGCTTTC  898

seq1  TCTACACAGGTTTACAGAACACTAGCACCTGACAAGGAAGCAAAGCAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAGGTTTACAGAACACTAGCACCTGACAAGGAAGCAAAGCAATA  948

seq1  AATCTTGGAATTC  961
      |||||||||||||
seq2  AATCTTGGAATTC  961