BAC Information

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BAC

Clone NameB6Ng01-007P20
Chromosome17 (Build37)
Map Location 47,023,747 - 47,129,377
singlet/doubletdoublet
Overlap geneA330017A19Rik, Tbcc, Prph2, Ubr2
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203
Downstream geneLOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007P20.bB6Ng01-007P20.g
ACCDH844402DH844403
length1,040791
definitionDH844402|Mus musculus domesticus DNA, BAC clone: B6Ng01-007P20, 5' end.DH844403|Mus musculus domesticus DNA, BAC clone: B6Ng01-007P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,023,747 - 47,024,774)(47,128,588 - 47,129,377)
sequence
gaattcttgatcctactgcttcagcctcctgagtgccgggattacaagca
tgaaccaccaaagcttggtttaaggttcactgttaaggcattataacatc
atgtaggaattggaaagatggctcggtggctagagcatccttatagatgt
tcaattcccatcatccacgtggtgcctcacaaccgtatgtaactccagtt
tcagggggttcaaggctctcttcctgtgggtactgagctcacatggtgca
catacacgcaggccaattactcatataggaagataaaaaagaaagagaga
aagacagaaaacccttgggtgctggagagatggttcagtggttaagagca
ctggctgctcttccagagacccaggtttaattcccagagcatacatggca
gctcacacctatctgtaacttcagttctagggaataagacaccctcacat
agacatacatgtaaggccaatcagcaaagcacataaaactttaaaaaaaa
aaaagtcaaacccaatacagagaaccataaaatatacaaaccattgttaa
atataagttaaggttggacagacaggccgggcgtggttggtgcacacctt
taatcccagcacttgggaggcagaggcaggcagatttctgagttcgaggc
cagcctggtctacagagtgagttccaggacagccagggctacacagagaa
accctgtcacaaaaaaaacaacaacaaaaagtggacagatgggaatgctg
aactgggtcaagtgttttgcctagagcctgagcccacataaaggtagaag
agagaaactcctggaagctgtccctctgacctccacttcccgtggtgtgg
tgtgtccatactggccccataaatcaaaaccaaattaaacattaaaactc
atagctgttctatcctttcaccttgcaagctgttctgcaagatccgtcag
ccttgccctgagagagctgcacttaattgctgctgccccttagcatgctt
ccccgtcctcctatcacggtgggtacttaccttttgcgga
gaattccaggacagccaaggctatacagagaaatcctgtctcgaaaaaaa
aggtgggacgagcctatgctgcttggaactcgaagagttaagaaagataa
cccagaaatcaggcttccacatcagcgtcaaccagtttgatctgatattt
taaatgataaatagaggcctgtggtgatggatcattcagggccacctcca
gcacctaagactctggatagttttattatgggcagatgaccctgccctgc
ccttcttcctctactaggaatgggagctggtgcatctggactcagacagt
aagggacagttgttaaaaggaacccctgctctcaggggaagataaaatgg
tgggaggagccctagtcctgttcttaattagggagctactgggtcagggc
ctttccaccagtttatttttgttcactctagcccggtgtcaatgataata
ggaaaagaaaaggggccatatataaaatcagttgtcttattctcatagac
cagggaccagggagaggcactccaggtcccttcagaatctcgggctggtg
tttcgtacagagcatgtgtaacagccagagcagggctgcctacccgtgtg
tcttggcccacatctgcatctcctgagaataagtgggatgtgcagtctgg
cgttgatggtgctgtaatacagagcacacaaatgcttacttgggcagaat
agaatagaatttattctgaaatttggtacacttgattttacccatcccta
acgctttttttgattttgttggtgatgttggggtttggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47023747_47024774
seq2: B6Ng01-007P20.b_47_1086

seq1  GAATTCTTGATCCTACTGCTTCAGCCTCCTGAGTGCCGGGATTACAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATCCTACTGCTTCAGCCTCCTGAGTGCCGGGATTACAAGCA  50

seq1  TGAACCACCAAAGCTTGGTTTAAGGTTCACTGTTAAGGCATTATAACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACCAAAGCTTGGTTTAAGGTTCACTGTTAAGGCATTATAACATC  100

seq1  ATGTAGGAATTGGAAAGATGGCTCGGTGGCTAGAGCATCCTTATAGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGAATTGGAAAGATGGCTCGGTGGCTAGAGCATCCTTATAGATGT  150

seq1  TCAATTCCCATCATCCACGTGGTGCCTCACAACCGTATGTAACTCCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCATCATCCACGTGGTGCCTCACAACCGTATGTAACTCCAGTT  200

seq1  TCAGGGGGTTCAAGGCTCTCTTCCTGTGGGTACTGAGCTCACATGGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGGTTCAAGGCTCTCTTCCTGTGGGTACTGAGCTCACATGGTGCA  250

seq1  CATACACGCAGGCCAATTACTCATATAGGAAGATAAAAAAGAAAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACGCAGGCCAATTACTCATATAGGAAGATAAAAAAGAAAGAGAGA  300

seq1  AAGACAGAAAACCCTTGGGTGCTGGAGAGATGGTTCAGTGGTTAAGAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAAAACCCTTGGGTGCTGGAGAGATGGTTCAGTGGTTAAGAGCA  350

seq1  CTGGCTGCTCTTCCAGAGACCCAGGTTTAATTCCCAGAGCATACATGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCTCTTCCAGAGACCCAGGTTTAATTCCCAGAGCATACATGGCA  400

seq1  GCTCACACCTATCTGTAACTTCAGTTCTAGGGAATAAGACACCCTCACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACCTATCTGTAACTTCAGTTCTAGGGAATAAGACACCCTCACAT  450

seq1  AGACATACATGTAAGGCCAATCAGCAAAGCACATAAAACTTTAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACATGTAAGGCCAATCAGCAAAGCACATAAAACTTTAAAAAAAA  500

seq1  AAAAGTCAAACCCAATACAGAGAACCATAAAATATACAAACCATTGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCAAACCCAATACAGAGAACCATAAAATATACAAACCATTGTTAA  550

seq1  ATATAAGTTAAGGTTGGACAGACAGGCCGGGCGTGGTTGGTGCACACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTTAAGGTTGGACAGACAGGCCGGGCGTGGTTGGTGCACACCTT  600

seq1  TAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGC  650

seq1  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAA  700

seq1  ACCCTGTCACAAAAAAAACAACAACAAAAAGTGGACAGATGGGAATGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCACAAAAAAAACAACAACAAAAAGTGGACAGATGGGAATGCTG  750

seq1  AACT-GGTCAAGTG-TTTGCCTAGAGCCTGAGCCCACATAAAGGTAGAAG  798
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACTGGGTCAAGTGTTTTGCCTAGAGCCTGAGCCCACATAAAGGTAGAAG  800

seq1  AGAGAAACTCCTGGAAGCTGT-CCTCTGACCTCCAC-TCCCGTGGTGTGG  846
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  AGAGAAACTCCTGGAAGCTGTCCCTCTGACCTCCACTTCCCGTGGTGTGG  850

seq1  TGTGTCCATACTGCCCCCATAAATC-AAACCAAATAAAACATTAAAACTC  895
      ||||||||||||| ||||||||||| ||||||||| ||||||||||||||
seq2  TGTGTCCATACTGGCCCCATAAATCAAAACCAAATTAAACATTAAAACTC  900

seq1  ATAGCTGTTCTATCCTTTCACTTTGCAAGCTG-TCTGCAAGATCCGTCAG  944
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  ATAGCTGTTCTATCCTTTCACCTTGCAAGCTGTTCTGCAAGATCCGTCAG  950

seq1  CCTTGCCCT--GAGAGCTGCACTTAA-TGCTGCTG-CCCTCTGCATGCCT  990
      |||||||||  ||||||||||||||| |||||||| ||||  |||||| |
seq2  CCTTGCCCTGAGAGAGCTGCACTTAATTGCTGCTGCCCCTTAGCATGCTT  1000

seq1  -CCCGTCCTCCCATCACGGTGGGTACTTACC-TTTGCGGA  1028
       |||||||||| ||||||||||||||||||| ||||||||
seq2  CCCCGTCCTCCTATCACGGTGGGTACTTACCTTTTGCGGA  1040

seq1: chr17_47128588_47129377
seq2: B6Ng01-007P20.g_67_857 (reverse)

seq1  CCACCAAA-CCCAACATCACCAACAAAATCAAAAAAAGCGTTAGGGATGG  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAACCCCAACATCACCAACAAAATCAAAAAAAGCGTTAGGGATGG  50

seq1  GTAAAATCAAGTGTACCAAATTTCAGAATAAATTCTATTCTATTCTGCCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATCAAGTGTACCAAATTTCAGAATAAATTCTATTCTATTCTGCCC  100

seq1  AAGTAAGCATTTGTGTGCTCTGTATTACAGCACCATCAACGCCAGACTGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGCATTTGTGTGCTCTGTATTACAGCACCATCAACGCCAGACTGC  150

seq1  ACATCCCACTTATTCTCAGGAGATGCAGATGTGGGCCAAGACACACGGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCACTTATTCTCAGGAGATGCAGATGTGGGCCAAGACACACGGGT  200

seq1  AGGCAGCCCTGCTCTGGCTGTTACACATGCTCTGTACGAAACACCAGCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCCTGCTCTGGCTGTTACACATGCTCTGTACGAAACACCAGCCC  250

seq1  GAGATTCTGAAGGGACCTGGAGTGCCTCTCCCTGGTCCCTGGTCTATGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTGAAGGGACCTGGAGTGCCTCTCCCTGGTCCCTGGTCTATGAG  300

seq1  AATAAGACAACTGATTTTATATATGGCCCCTTTTCTTTTCCTATTATCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACAACTGATTTTATATATGGCCCCTTTTCTTTTCCTATTATCAT  350

seq1  TGACACCGGGCTAGAGTGAACAAAAATAAACTGGTGGAAAGGCCCTGACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCGGGCTAGAGTGAACAAAAATAAACTGGTGGAAAGGCCCTGACC  400

seq1  CAGTAGCTCCCTAATTAAGAACAGGACTAGGGCTCCTCCCACCATTTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCTCCCTAATTAAGAACAGGACTAGGGCTCCTCCCACCATTTTAT  450

seq1  CTTCCCCTGAGAGCAGGGGTTCCTTTTAACAACTGTCCCTTACTGTCTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTGAGAGCAGGGGTTCCTTTTAACAACTGTCCCTTACTGTCTGA  500

seq1  GTCCAGATGCACCAGCTCCCATTCCTAGTAGAGGAAGAAGGGCAGGGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGATGCACCAGCTCCCATTCCTAGTAGAGGAAGAAGGGCAGGGCAG  550

seq1  GGTCATCTGCCCATAATAAAACTATCCAGAGTCTTAGGTGCTGGAGGTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCTGCCCATAATAAAACTATCCAGAGTCTTAGGTGCTGGAGGTGG  600

seq1  CCCTGAATGATCCATCACCACAGGCCTCTATTTATCATTTAAAATATCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATGATCCATCACCACAGGCCTCTATTTATCATTTAAAATATCAG  650

seq1  ATCAAACTGGTTGACGCTGATGTGGAAGCCTGATTTCTGGGTTATCTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTGGTTGACGCTGATGTGGAAGCCTGATTTCTGGGTTATCTTTC  700

seq1  TTAACTCTTCGAGTTCCAAGCAGCATAGGCTCGTCCCACCTTTTTTTTCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTCGAGTTCCAAGCAGCATAGGCTCGTCCCACCTTTTTTTTCG  750

seq1  AGACAGGATTTCTCTGTATAGCCTTGGCTGTCCTGGAATTC  790
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATTTCTCTGTATAGCCTTGGCTGTCCTGGAATTC  791