BAC Information

Click to search

BAC

Clone NameB6Ng01-009L21
Chromosome17 (Build37)5 (Build37)
Map Location 87,563,417 - 87,563,4738,524,693 - 8,525,831
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC545228, Prkce, Epas1, 1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5
Downstream geneMcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009L21.bB6Ng01-009L21.g
ACCDH845603DH845604
length5601,125
definitionDH845603|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L21, 5' end.DH845604|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,563,417 - 87,563,473)(8,524,693 - 8,525,831)
sequence
tttgttttactctgtaccccatttttaaatagggttatttggttctctgg
agtctttaatttcatgagttctttgtatatattggatgttagccctctgt
cagatgtaggattggtaaagatcttcttcaaatttgtaggttgccatttt
gtcctgatgacagtgtcctttgccttacaaaagcttttcaatgttatgag
atcccatttgtctatactcgatcttagagcctggggcattggtgttctat
tcaggatatttttccctgtgcccatgtgtactagactctttcccaatgtc
tcttctaatagattcagtgcatttggttttacgtggaggtctttgatcca
cttggacttgagctttgtacaaggagataagaatggatcagtttgcattc
ttctacatgctgatcaccacttgagccagcaccatttattgaatataatg
tctttttttccagtggatggttttagcttctttgtcaagaatcaggtgac
cgctgggcgtggtggtgcatgcctttaatcccagcactcgggaggcagag
gcaggtggat
gaattctaagaatgcactgggcttattcctcagaagttatactcttgaga
attctggaatatatggccaggaaacatataactgtgttcatagcattatt
gttaataacaaaagaattctgaaataattctaatggccattgactaggta
tagattaaattataatattcatacaatgaaataatatatagtattgaaag
taaatagacgattggctaaaatcaccaatgtagatgaaaaagcaagcttc
aaaagagtagaggcaaaactcagggaaaccaagctgtattttaagacaac
atacatatatgtcaagatactgcccttcctgcagattacagaaatcagta
tactggctcctactatagcagtaattaattgagataatagattgtttatt
ttttaattactagtgcttaaaatttttatatatagtttatattaaatata
tataaagacttgttttgcttataaaattattttctatgattgagattcta
ttatgatctaaatgtatgaaatttattatggaaaacagccttcaggggca
aataatactagctactatcaacaggtatgaagttaaaagaaaggaggcag
tttgtcaatgtcacaaacaagatatcacagactgtggtataaatggaaga
gctagactatgacctcagcatctcatagccaataccctacagtctaatga
atacacaggcctcccactagtatactaaaatatcagtatctatatgattt
tgaatagtaattacatagagtaaattttctaatagaactatagtttaaag
ctaggaggtatgtactgaacactgttaacaaagcttgggaatattttcat
ttatttatgtattcactttacgtctctatcacagcccacccacccccttt
tcagggtccccctcacacacagccctcccctccacttctctctgaggata
gagcccctcttccccttgtaagactaccctggcacatcaattccctgcat
cctccccactgaggccgacagtcagcccagttaggggatgggtcgggcag
tatcaaagttcgggaagctccctctcttcagttgttggtgacctgaatga
agtacaaaccacacatctgcttatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87563417_87563473
seq2: B6Ng01-009L21.b_555_610 (reverse)

seq1  ATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACC  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCACCACC  50

seq1  ACCGCCC  57
      | |||||
seq2  A-CGCCC  56

seq1: chr5_8524693_8525831
seq2: B6Ng01-009L21.g_66_1190 (reverse)

seq1  CATATAGCAGATGTGTGGCTTGGTCTTCATTCAGGTCTACCAACAACTG-  49
      |||| ||||||||||||| |||  ||||||||||||| ||||||||||| 
seq2  CATA-AGCAGATGTGTGGTTTGTACTTCATTCAGGTC-ACCAACAACTGA  48

seq1  -GAGAGGGGGCTGTCCCTGACTCTGTTGCCTGCCTGCCCATTCCCCTAAC  98
       ||||||| ||| ||||  ||| || |  ||||| | ||  |||||||||
seq2  AGAGAGGGAGCT-TCCCGAACTTTGAT-ACTGCCCGACCCATCCCCTAAC  96

seq1  TGGGCTGACTTGTCTGGCCTCAGTGGGAGAGGATGCAGGGAATTGATGTG  148
      ||||||||| |||| |||||||||||| ||||||||||||||||||||||
seq2  TGGGCTGAC-TGTC-GGCCTCAGTGGG-GAGGATGCAGGGAATTGATGTG  143

seq1  CCAGGGTGAGTTCATACCAAGGGGGAGGAGGGGCTCCTAATCCTCAGAGG  198
      ||||||| || || |||  | ||||| |||||||||   ||||||||| |
seq2  CCAGGGT-AG-TCTTAC--AAGGGGAAGAGGGGCTC--TATCCTCAGA-G  186

seq1  AGAAGTGGAGGGGGAGGGGCTGTGTGAGAGGGGGACACTGAAAAGGGGGT  248
      |||||||||||||   |||||||||| ||||||||| |||||||||||||
seq2  AGAAGTGGAGGGG--AGGGCTGTGTGTGAGGGGGACCCTGAAAAGGGGGT  234

seq1  GGGTGGGCTGTGATAGAGACGTAAAGTGAATACATAAATAAATGAAAATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCTGTGATAGAGACGTAAAGTGAATACATAAATAAATGAAAATA  284

seq1  TTCCCAAGCTTTGTTAACAGTGTTCAGTACATACCTCCTAGCTTTAAACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGCTTTGTTAACAGTGTTCAGTACATACCTCCTAGCTTTAAACT  334

seq1  ATAGTTCTATTAGAAAATTTACTCTATGTAATTACTATTCAAAATCATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTATTAGAAAATTTACTCTATGTAATTACTATTCAAAATCATAT  384

seq1  AGATACTGATATTTTAGTATACTAGTGGGAGGCCTGTGTATTCATTAGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTGATATTTTAGTATACTAGTGGGAGGCCTGTGTATTCATTAGAC  434

seq1  TGTAGGGTATTGGCTATGAGATGCTGAGGTCATAGTCTAGCTCTTCCATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGTATTGGCTATGAGATGCTGAGGTCATAGTCTAGCTCTTCCATT  484

seq1  TATACCACAGTCTGTGATATCTTGTTTGTGACATTGACAAACTGCCTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCACAGTCTGTGATATCTTGTTTGTGACATTGACAAACTGCCTCCT  534

seq1  TTCTTTTAACTTCATACCTGTTGATAGTAGCTAGTATTATTTGCCCCTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAACTTCATACCTGTTGATAGTAGCTAGTATTATTTGCCCCTGA  584

seq1  AGGCTGTTTTCCATAATAAATTTCATACATTTAGATCATAATAGAATCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTTTCCATAATAAATTTCATACATTTAGATCATAATAGAATCTC  634

seq1  AATCATAGAAAATAATTTTATAAGCAAAACAAGTCTTTATATATATTTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAGAAAATAATTTTATAAGCAAAACAAGTCTTTATATATATTTAA  684

seq1  TATAAACTATATATAAAAATTTTAAGCACTAGTAATTAAAAAATAAACAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTATATATAAAAATTTTAAGCACTAGTAATTAAAAAATAAACAA  734

seq1  TCTATTATCTCAATTAATTACTGCTATAGTAGGAGCCAGTATACTGATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATCTCAATTAATTACTGCTATAGTAGGAGCCAGTATACTGATTT  784

seq1  CTGTAATCTGCAGGAAGGGCAGTATCTTGACATATATGTATGTTGTCTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCTGCAGGAAGGGCAGTATCTTGACATATATGTATGTTGTCTTA  834

seq1  AAATACAGCTTGGTTTCCCTGAGTTTTGCCTCTACTCTTTTGAAGCTTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGCTTGGTTTCCCTGAGTTTTGCCTCTACTCTTTTGAAGCTTGC  884

seq1  TTTTTCATCTACATTGGTGATTTTAGCCAATCGTCTATTTACTTTCAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATCTACATTGGTGATTTTAGCCAATCGTCTATTTACTTTCAATA  934

seq1  CTATATATTATTTCATTGTATGAATATTATAATTTAATCTATACCTAGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATTATTTCATTGTATGAATATTATAATTTAATCTATACCTAGTC  984

seq1  AATGGCCATTAGAATTATTTCAGAATTCTTTTGTTATTAACAATAATGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCATTAGAATTATTTCAGAATTCTTTTGTTATTAACAATAATGCT  1034

seq1  ATGAACACAGTTATATGTTTCCTGGCCATATATTCCAGAATTCTCAAGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACAGTTATATGTTTCCTGGCCATATATTCCAGAATTCTCAAGAG  1084

seq1  TATAACTTCTGAGGAATAAGCCCAGTGCATTCTTAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTCTGAGGAATAAGCCCAGTGCATTCTTAGAATTC  1125