BAC Information

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BAC

Clone NameB6Ng01-010D15
Chromosome17 (Build37)
Map Location 52,264,233 - 52,330,885
singlet/doubletdoublet
Overlap genenone
Upstream geneTbc1d5, LOC100043451, LOC100043452, Satb1, EG628919
Downstream geneLOC672987, EG328839, Kcnh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010D15.bB6Ng01-010D15.g
ACCDH845955DH845956
length1,1021,132
definitionDH845955|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D15, 5' end.DH845956|Mus musculus domesticus DNA, BAC clone: B6Ng01-010D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,264,233 - 52,265,350)(52,329,748 - 52,330,885)
sequence
gaattcaatttatgctcagcatgctcaaggattgagtcaaaactcaatta
tccattgggtcaatcactgactcataggagttgggagaacagaatcctag
gttcttttccctgggtgaggtaactttgaggttatagcccacacaggttc
tcagcatcctccagtagaatcaagctcctacccaccctgagaagtcttat
cccataactttctactgactatctgtcttttatctctttattcccttcct
cttctagaactttctagaatcacctcactctgaagtacatggacccgtct
ttcgaatcctgcttctgggaaaaatgtaaatgaagacaaagatgcagatg
agttctagcccatgtgtgtttccacgcatagatacgaaaccccagcctca
gcctttgcctttgagtgacttgtggctcttttatgtatttctaatggctg
tttactgtcaggggctggaggagggacacaaagcatttccagcatccctt
atataccttgtggttggttcacagccctcggcagcacgcatccctagtcc
caagatctcctgctgactttgagctgccgcttgtgtaggagggtggtgag
tagagactgcagcttcaaagcttcagaggtgcaatcataggggaaattct
gtggtacgccttttcacccagctgacaggaatctagattctctgacatct
tctttgacatttgtttgctttctcatgtttgtagctccaacatatctttt
ttttcacagatttgatttgtctgtgaaatttttcctgaaaacactttcat
agcttgaggatcctcaacaccagcacccggaattgactttcattcataga
atttgtcagtcgcaggatcctatttttctttaattttatctaagaaacaa
ggtatgtgaggtggggagattttcacctgctttattcctgctatatcatg
ggaggattcagttgatattcatggaaaaaacatcatttagataccgaagg
cagcatacatgtctgtaatggctaagttccacacatgggacctgaagctg
ctgagtcagttgtcttgtggggtattggctgagtctattctaagcaccag
gc
gaattcttaacttttgcagcagatgaacttcttgtatttatttttaggca
ctgtgctctgggctgcctgcatcatgtcaatgtttgctgtgctaactttg
catctaaaggttattcaacacactaagatatgaaaaagcactcacgcttt
tacctcaaagaaattgtgcttggattctgctgtatgttcttgatggtgtt
aaatgtcagaaaaaataactggaaatataaagtactgggaggtatgctac
gactctgccctagattgtctgtgctgttgaaggatatgaagacgtcactg
ttcttgagctcagagctggccttctggtatcagtctgtcagatttctggg
aggaatacagattgggagatagaaagataagtcagtgattatttctctct
gcctgcaatgtatatagccagagccataaggaacagaatccaaagaggtg
cctgaaggactcagagggcacgtgcgtggtggaagggttcttagctaaga
atactttgattccttggcatttaattctcatgtcaaccttaaatgtgtca
atattatctcaactctgtgaataaggaaattgggtcttggacaagtcaac
ttatggggcacagagctcttaccctgctctccagttaacagaagaactaa
agtccagggttacttctgagtggagttttgattctgactcaaaagccagc
aatgatgcctccaagcagctccctggtggaagaagtcaactatttgcttc
tgaatctgtccattgtttcaaagcataggcaggatcttgccctgactgct
acttcaatcatgagtgaatttgctcatgcgtatagagagaggccaagaca
ctccctaattttgaagcagtgaagacagtcaagaaaacagtgcaggtcag
tcaaggaatgcttccagtagagccaggcagctccaccaaagctttgcaca
tgcacacacacacatgctcacacatacacagcgagaaggtggaaagagtg
gtactcacagtcagacatactgtatcaactcaggagaggaggagaattta
aatgggtcctgaaaattcctctttggtagaatgaagatggattgattcat
ttctatcccaaagagcatgagatgctatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52264233_52265350
seq2: B6Ng01-010D15.b_42_1143

seq1  GAATTCAATTTATGCTCAGCATGCTCAAGGATTGAGTCAAAACTCAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTATGCTCAGCATGCTCAAGGATTGAGTCAAAACTCAATTA  50

seq1  TCCATTGGGTCAATCACTGACTCATAGGAGTTGGGAGAACAGAATCCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGGGTCAATCACTGACTCATAGGAGTTGGGAGAACAGAATCCTAG  100

seq1  GTTCTTTTCCCTGGGTGAGGTAACTTTGAGGTTATAGCCCACACAGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTCCCTGGGTGAGGTAACTTTGAGGTTATAGCCCACACAGGTTC  150

seq1  TCAGCATCCTCCAGTAGAATCAAGCTCCTACCCACCCTGAGAAGTCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCCTCCAGTAGAATCAAGCTCCTACCCACCCTGAGAAGTCTTAT  200

seq1  CCCATAACTTTCTACTGACTATCTGTCTTTTATCTCTTTATTCCCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAACTTTCTACTGACTATCTGTCTTTTATCTCTTTATTCCCTTCCT  250

seq1  CTTCTAGAACTTTCTAGAATCACCTCACTCTGAAGTACATGGACCCGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAACTTTCTAGAATCACCTCACTCTGAAGTACATGGACCCGTCT  300

seq1  TTCGAATCCTGCTTCTGGGAAAAATGTAAATGAAGACAAAGATGCAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAATCCTGCTTCTGGGAAAAATGTAAATGAAGACAAAGATGCAGATG  350

seq1  AGTTCTAGCCCATGTGTGTTTCCACGCATAGATACGAAACCCCAGCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGCCCATGTGTGTTTCCACGCATAGATACGAAACCCCAGCCTCA  400

seq1  GCCTTTGCCTTTGAGTGACTTGTGGCTCTTTTATGTATTTCTAATGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCCTTTGAGTGACTTGTGGCTCTTTTATGTATTTCTAATGGCTG  450

seq1  TTTACTGTCAGGGGCTGGAGGAGGGACACAAAGCATTTCCAGCATCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTCAGGGGCTGGAGGAGGGACACAAAGCATTTCCAGCATCCCTT  500

seq1  ATATACCTTGTGGTTGGTTCACAGCCCTCGGCAGCACGCATCCCTAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCTTGTGGTTGGTTCACAGCCCTCGGCAGCACGCATCCCTAGTCC  550

seq1  CAAGATCTCCTGCTGACTTTGAGCTGCCGCTTGTGTAGGAGGGTGGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTCCTGCTGACTTTGAGCTGCCGCTTGTGTAGGAGGGTGGTGAG  600

seq1  TAGAGACTGCAGCTTCAAAGCTTCAGAGGTGCAATCATAGGGGAAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTGCAGCTTCAAAGCTTCAGAGGTGCAATCATAGGGGAAATTCT  650

seq1  GTGGTACGCCTTTTCACCCAGCTGACAGGAATCTAGATTCTCTGACATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACGCCTTTTCACCCAGCTGACAGGAATCTAGATTCTCTGACATCT  700

seq1  TCTTTGACATTTGTTTGCTTTCTCATGTTTGTAGCTCCAACATATCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACATTTGTTTGCTTTCTCATGTTTGTAGCTCCAACATATCTTTT  750

seq1  TTTTCACAGATTTGATTTTGTCTGTGAAATTTTTCCTGAAAACACTTTCA  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTCACAGATTTGA-TTTGTCTGTGAAATTTTTCCTGAAAACACTTTCA  799

seq1  TAGCTTGAGGATCCTCAACACCAGCACCCGGAATTGACTTTCATTCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGAGGATCCTCAACACCAGCACCCGGAATTGACTTTCATTCATAG  849

seq1  AATTTGTCAGTCGCAGGAATCCTATTTTTTCTTTAATTTTATCTAAGAAA  900
      ||||||||||||||||| |||||| |||||||||||||||||||||| ||
seq2  AATTTGTCAGTCGCAGG-ATCCTA-TTTTTCTTTAATTTTATCTAAG-AA  896

seq1  ACAAGGTATGTGAGGT-GGGAGATTTTCACCTGCTTTATTCCTGCCTATA  949
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  ACAAGGTATGTGAGGTGGGGAGATTTTCACCTGCTTTATTCCTG-CTATA  945

seq1  TTCATGGGAGGAATTCAGTTGATATTCATTGAAAAAACAAATCATTTAGA  999
       |||||||||| ||||||||||||||||| ||||||||  ||||||||||
seq2  -TCATGGGAGG-ATTCAGTTGATATTCATGGAAAAAAC--ATCATTTAGA  991

seq1  TACCGAAGGCAGCATACATGTCTGTAAATGGCTAAG-TCCACACATGGGG  1048
      ||||||||||||||||||||||||| |||||||||| |||||||||||| 
seq2  TACCGAAGGCAGCATACATGTCTGT-AATGGCTAAGTTCCACACATGGG-  1039

seq1  ACCCTGAAAAGCTGCTGAGTCAGTTGTCTTTGTGGTGTATTTGCCTGAGT  1098
        ||||  |||||||||||||||||||| |||||| ||| ||| ||||||
seq2  -ACCTG--AAGCTGCTGAGTCAGTTGTC-TTGTGGGGTA-TTGGCTGAGT  1084

seq1  CATATTCTAGAGCACCAGGC  1118
      | ||||||| ||||||||||
seq2  C-TATTCTA-AGCACCAGGC  1102

seq1: chr17_52329748_52330885
seq2: B6Ng01-010D15.g_66_1197 (reverse)

seq1  AAATATAGCATCTCCTGCTCTTTGGG-TAGAAATGAAACTCAAATCAATC  49
      |||||||||||||| ||||||||||| |||||||||| |   |||| |||
seq2  AAATATAGCATCTCATGCTCTTTGGGATAGAAATGAATC---AATCCATC  47

seq1  TCATTTCTAAACAAAGGAGGATTTTTCAGGACCATTTTAAAATTCTCCTC  99
      |   ||||  || || ||||| |||||||||||  ||| |||||||||||
seq2  TTCATTCT--ACCAAAGAGGAATTTTCAGGACCCATTT-AAATTCTCCTC  94

seq1  CTCTCCTGAGTTGATACAGTATGTCTTGACTGTGAGTACCACTCTTTCCA  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCTCCTGAGTTGATACAGTATGTC-TGACTGTGAGTACCACTCTTTCCA  143

seq1  CC-TCTCGCTGTGTATGTGTGAGCATGTGTGTGTGTGCATGTGCAAAGCT  198
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCGCTGTGTATGTGTGAGCATGTGTGTGTGTGCATGTGCAAAGCT  193

seq1  TTGGTGGAGCTGCCTGGCTCTACCTGGAAGCATTCCTTGACTGACCTGCA  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGGTGGAGCTGCCTGGCTCTA-CTGGAAGCATTCCTTGACTGACCTGCA  242

seq1  CTGTTTTCTTGACTGTCTTCACTGCTTCAAAATTAGGGAGTGTCTTGGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTTGACTGTCTTCACTGCTTCAAAATTAGGGAGTGTCTTGGCC  292

seq1  TCTCTCTATACGCATGAGCAAATTCACTCATGATTGAAGTAGCAGTCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTATACGCATGAGCAAATTCACTCATGATTGAAGTAGCAGTCAGG  342

seq1  GCAAGATCCTGCCTATGCTTTGAAACAATGGACAGATTCAGAAGCAAATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATCCTGCCTATGCTTTGAAACAATGGACAGATTCAGAAGCAAATA  392

seq1  GTTGACTTCTTCCACCAGGGAGCTGCTTGGAGGCATCATTGCTGGCTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTTCTTCCACCAGGGAGCTGCTTGGAGGCATCATTGCTGGCTTTT  442

seq1  GAGTCAGAATCAAAACTCCACTCAGAAGTAACCCTGGACTTTAGTTCTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAATCAAAACTCCACTCAGAAGTAACCCTGGACTTTAGTTCTTC  492

seq1  TGTTAACTGGAGAGCAGGGTAAGAGCTCTGTGCCCCATAAGTTGACTTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTGGAGAGCAGGGTAAGAGCTCTGTGCCCCATAAGTTGACTTGT  542

seq1  CCAAGACCCAATTTCCTTATTCACAGAGTTGAGATAATATTGACACATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACCCAATTTCCTTATTCACAGAGTTGAGATAATATTGACACATTT  592

seq1  AAGGTTGACATGAGAATTAAATGCCAAGGAATCAAAGTATTCTTAGCTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGACATGAGAATTAAATGCCAAGGAATCAAAGTATTCTTAGCTAA  642

seq1  GAACCCTTCCACCACGCACGTGCCCTCTGAGTCCTTCAGGCACCTCTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTTCCACCACGCACGTGCCCTCTGAGTCCTTCAGGCACCTCTTTG  692

seq1  GATTCTGTTCCTTATGGCTCTGGCTATATACATTGCAGGCAGAGAGAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTTCCTTATGGCTCTGGCTATATACATTGCAGGCAGAGAGAAAT  742

seq1  AATCACTGACTTATCTTTCTATCTCCCAATCTGTATTCCTCCCAGAAATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGACTTATCTTTCTATCTCCCAATCTGTATTCCTCCCAGAAATC  792

seq1  TGACAGACTGATACCAGAAGGCCAGCTCTGAGCTCAAGAACAGTGACGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACTGATACCAGAAGGCCAGCTCTGAGCTCAAGAACAGTGACGTC  842

seq1  TTCATATCCTTCAACAGCACAGACAATCTAGGGCAGAGTCGTAGCATACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCCTTCAACAGCACAGACAATCTAGGGCAGAGTCGTAGCATACC  892

seq1  TCCCAGTACTTTATATTTCCAGTTATTTTTTCTGACATTTAACACCATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTACTTTATATTTCCAGTTATTTTTTCTGACATTTAACACCATCA  942

seq1  AGAACATACAGCAGAATCCAAGCACAATTTCTTTGAGGTAAAAGCGTGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATACAGCAGAATCCAAGCACAATTTCTTTGAGGTAAAAGCGTGAG  992

seq1  TGCTTTTTCATATCTTAGTGTGTTGAATAACCTTTAGATGCAAAGTTAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTCATATCTTAGTGTGTTGAATAACCTTTAGATGCAAAGTTAGC  1042

seq1  ACAGCAAACATTGACATGATGCAGGCAGCCCAGAGCACAGTGCCTAAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAACATTGACATGATGCAGGCAGCCCAGAGCACAGTGCCTAAAAA  1092

seq1  TAAATACAAGAAGTTCATCTGCTGCAAAAGTTAAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAAGAAGTTCATCTGCTGCAAAAGTTAAGAATTC  1132