BAC Information

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BAC

Clone NameB6Ng01-010L16
Chromosome17 (Build37)
Map Location 81,388,971 - 81,553,120
singlet/doubletdoublet
Overlap geneTmem178, Thumpd2
Upstream geneHnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830
Downstream geneLOC100043700, LOC100043704, Slc8a1, EG668832, LOC100043707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010L16.bB6Ng01-010L16.g
ACCDH846314DH846315
length1,0091,051
definitionDH846314|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L16, 5' end.DH846315|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,388,971 - 81,389,982)(81,552,063 - 81,553,120)
sequence
gaattctttgatatgtaatttttcaatagctttcttgacctgatttttac
aacctgattctgttttgagattagatctaagaagaataacagctggcttc
ctgggcatggcggtggctgtcctgctgtgtggctgcattgtggccacggt
cagcttcttctgggaggaaagcctgacccagcacgtggccggactcctat
tcctcatgacaggtaaactgtataccgacagcctcctccttgtggcacag
tactaggctcggtcatatcactattaattttggtttcggtggtgaggagt
gagcaagcagaagctcattcatctttggtagaaaacaaagaatttaaagg
gagcagtgtacacagtacactggtcaattttcccgcagtagcattagtag
gtcagagggaagggtcctgcattcattctcaattggagtcgatgctgtat
tttctgtcttattgcttaattctatgtcttggggagaaaggtcagtagct
aaaagtcccctcatagtctatgaaccagggacgtgtccttggcgttactg
ttggagaatttcttgtgtcgagggctgctcttggtcttagagacatagag
agcaggcagcatatccctgcccatttttattgtggagagacataagaaat
tatttgtgatagcaataaaaaccgtgaagaagagcagggtacaattgggt
tgggagatgctgaggcagcagtttctgagtaaaatcacgagaagcagcca
gaagtcggaagagaactgtgggttgaagatgccaccagtctctgactcct
gagcaggagtcagatgagcacgttctgagaaggaagagaggtaggagaca
gaaggaaccacacaaagtgagagccatggtcaggaccaaatctttagaga
tctctaataaagaggagagagaggagcatgaatttaaagtgaaagttctg
gaaactgtttaatggaaaggacgacttacttaaaacatgagggtgtgcaa
acatggcta
gaattccagttccagtgaaacatgctgcctcaaaaactaaggtggagaag
tggttgagtaaaaacaccacatctcctctctgtgacctccacacactcat
gggcaaacatgccacacacacacacacacacgtctccctcccttggaagt
ccagaattatggcatgatttcctaatatgtttggccatgacatttaaagc
ataggggtgacattattttctaaaaaacaagacactaaaacatattaata
attgtagtatgttaatttgggtcctgttccatttttcctttcaaagaact
tgaacattaaaagggctaagaataaaaatttttaaaaaaacacattgatt
tttacctacattctttgcttgaaaaaacatgcgtaaatcttaaaattatt
ggaatgtgcttatgtcattctccttaggcaattcctggattaaggctaga
agaaaagatcaacttaagggcttttccttcttcttctgaatgtaagtgct
ttgttgaaggctctcaaaatcataagatcccaagggcttcctgcccaaaa
tttctttttatttatgatatttaaattctccagctttttgggggacataa
gagagaaaacacaaaatgtgatgctccggagctttcagaaacctcagtac
acaatcacaagcattctacaaagcagaatagagtgagctaagtgctacca
ggagacaaagcgagggaagtacggtcagctggaaatcaagggaaggcacc
acagatagaagacctgacttccaaagataaagaacgttatggtagacagg
gtgaaaaagccatttcaccaggacaactaaaaggttgggaaatctagagg
acacaggttgaagaatttggctggatcatgggataaatgtgagaaagaaa
aagagcaaagagtatatgacggatcttgaaggtaaatgtaaatttgggtt
ctcttttctaaaagagaggagagggaagagaaagaaacccctcctgtgct
cagtcctgacacagtgaaatcctgactgacttcttcttgaaagattgact
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_81388971_81389982
seq2: B6Ng01-010L16.b_47_1055

seq1  GAATTCTTTGATATGTAATTTTTCAATAGCTTTCTTGACCTGATTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGATATGTAATTTTTCAATAGCTTTCTTGACCTGATTTTTAC  50

seq1  AACCTGATTCTGTTTTGAGATTAGATCTAAGAAGAATAACAGCTGGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGATTCTGTTTTGAGATTAGATCTAAGAAGAATAACAGCTGGCTTC  100

seq1  CTGGGCATGGCGGTGGCTGTCCTGCTGTGTGGCTGCATTGTGGCCACGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCATGGCGGTGGCTGTCCTGCTGTGTGGCTGCATTGTGGCCACGGT  150

seq1  CAGCTTCTTCTGGGAGGAAAGCCTGACCCAGCACGTGGCCGGACTCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTCTGGGAGGAAAGCCTGACCCAGCACGTGGCCGGACTCCTAT  200

seq1  TCCTCATGACAGGTAAACTGTATACCGACAGCCTCCTCCTTGTGGCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGACAGGTAAACTGTATACCGACAGCCTCCTCCTTGTGGCACAG  250

seq1  TACTAGGCTCGGTCATATCACTATTAATTTTGGTTTCGGTGGTGAGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGCTCGGTCATATCACTATTAATTTTGGTTTCGGTGGTGAGGAGT  300

seq1  GAGCAAGCAGAAGCTCATTCATCTTTGGTAGAAAACAAAGAATTTAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCAGAAGCTCATTCATCTTTGGTAGAAAACAAAGAATTTAAAGG  350

seq1  GAGCAGTGTACACAGTACACTGGTCAATTTTCCCGCAGTAGCATTAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGTACACAGTACACTGGTCAATTTTCCCGCAGTAGCATTAGTAG  400

seq1  GTCAGAGGGAAGGGTCCTGCATTCATTCTCAATTGGAGTCGATGCTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGGAAGGGTCCTGCATTCATTCTCAATTGGAGTCGATGCTGTAT  450

seq1  TTTCTGTCTTATTGCTTAATTCTATGTCTTGGGGAGAAAGGTCAGTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTTATTGCTTAATTCTATGTCTTGGGGAGAAAGGTCAGTAGCT  500

seq1  AAAAGTCCCCTCATAGTCTATGAACCAGGGACGTGTCCTTGGCGTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCCCTCATAGTCTATGAACCAGGGACGTGTCCTTGGCGTTACTG  550

seq1  TTGGAGAATTTCTTGTGTCGAGGGCTGCTCTTGGTCTTAGAGACATAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAATTTCTTGTGTCGAGGGCTGCTCTTGGTCTTAGAGACATAGAG  600

seq1  AGCAGGCAGCATATCCCTGCCCATTTTTATTGTGGAGAGACATAAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGCATATCCCTGCCCATTTTTATTGTGGAGAGACATAAGAAAT  650

seq1  TATTTGTGATAGCAATAAAAACCGTGAAGAAGAGCAGGGTACAATTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGATAGCAATAAAAACCGTGAAGAAGAGCAGGGTACAATTGGGT  700

seq1  TGGGAGATGCTGAGGCAGCAGTTTCTGAGTAAAATCACGAGAAGCAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGCTGAGGCAGCAGTTTCTGAGTAAAATCACGAGAAGCAGCCA  750

seq1  GAAGTCGGAAGAGAACTGTGGGTTGAAGATGCCACCAGTCTCTGACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGGAAGAGAACTGTGGGTTGAAGATGCCACCAGTCTCTGACTCCT  800

seq1  GAGCAGGAGTCAGATGAGCACGTTCTGAGAAGGAAGAGAGGTAGGAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGAGTCAGATGAGCACGTTCTGAGAAGGAAGAGAGGTAGGAGACA  850

seq1  GAAAGGAACCACACAAAGTGAGAGCCATGGTCAGGACCAAATCTTTAGAG  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAGGAACCACACAAAGTGAGAGCCATGGTCAGGACCAAATCTTTAGAG  899

seq1  ATCTCTTAATAAAGAGAAGAGAGAGGAGCATGAATTTAAAGTGAAAGTTC  950
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCTC-TAATAAAGAGGAGAGAGAGGAGCATGAATTTAAAGTGAAAGTTC  948

seq1  TGGAAACTGTTTAATGG-AAGGACGACTTTACTTAAAACATGAGGGGTGT  999
      ||||||||||||||||| ||||||||| ||||||||||||||| ||||||
seq2  TGGAAACTGTTTAATGGAAAGGACGAC-TTACTTAAAACATGA-GGGTGT  996

seq1  GCAAACATGGCTA  1012
      |||||||||||||
seq2  GCAAACATGGCTA  1009

seq1: chr17_81552063_81553120
seq2: B6Ng01-010L16.g_65_1115 (reverse)

seq1  CAGTCAATCTTCTCAAAGAAGAAGTTCAGTCAGGATTTCACTGTGTCAGG  50
      ||||||||||| || ||||||||| |||||||||||||||||||||||||
seq2  CAGTCAATCTT-TC-AAGAAGAAG-TCAGTCAGGATTTCACTGTGTCAGG  47

seq1  ACTGGGCACCAAGGAGGGGTTTCTTTCTCTTCCCTCTCCTCTCTTTTAGA  100
      |||| ||||  |||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAC--AGGAGGGGTTTCTTTCTCTTCCCTCTCCTCTCTTTTAGA  95

seq1  AAAGAGAACCCAAATTTACATTTACCTTCAAGATCCGTCATATACTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGAGAACCCAAATTTACATTTACCTTCAAGATCCGTCATATACTC-TT  144

seq1  TGCTCTTTTTCTTTCTCACATTTATCCCATGATCCAGCCAAATTCTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTTTCTTTCTCACATTTATCCCATGATCCAGCCAAATTCTTCAA  194

seq1  CCTGTGTCCTCTAGATTTTCCCAACCTTTTAGTTGTCCTGGTGAAATGGC  250
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCCTCTAGA-TTTCCCAACCTTTTAGTTGTCCTGGTGAAATGGC  243

seq1  TTTTTCACCCTGTCTACCATAACGTTCTTTATCTTTGGAAGTCAGGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACCCTGTCTACCATAACGTTCTTTATCTTTGGAAGTCAGGTCTT  293

seq1  CTATCTGTGGTGCCTTCCCTTGATTTCCAGCTGACCGTACTTCCCTCGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTGGTGCCTTCCCTTGATTTCCAGCTGACCGTACTTCCCTCGCT  343

seq1  TTGTCTCCTGGTAGCACTTAGCTCACTCTATTCTGCTTTGTAGAATGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCTGGTAGCACTTAGCTCACTCTATTCTGCTTTGTAGAATGCTT  393

seq1  GTGATTGTGTACTGAGGTTTCTGAAAGCTCCGGAGCATCACATTTTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGTGTACTGAGGTTTCTGAAAGCTCCGGAGCATCACATTTTGTGT  443

seq1  TTTCTCTCTTATGTCCCCCAAAAAGCTGGAGAATTTAAATATCATAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTTATGTCCCCCAAAAAGCTGGAGAATTTAAATATCATAAATA  493

seq1  AAAAGAAATTTTGGGCAGGAAGCCCTTGGGATCTTATGATTTTGAGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATTTTGGGCAGGAAGCCCTTGGGATCTTATGATTTTGAGAGCC  543

seq1  TTCAACAAAGCACTTACATTCAGAAGAAGAAGGAAAAGCCCTTAAGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAAGCACTTACATTCAGAAGAAGAAGGAAAAGCCCTTAAGTTGA  593

seq1  TCTTTTCTTCTAGCCTTAATCCAGGAATTGCCTAAGGAGAATGACATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTCTAGCCTTAATCCAGGAATTGCCTAAGGAGAATGACATAAG  643

seq1  CACATTCCAATAATTTTAAGATTTACGCATGTTTTTTCAAGCAAAGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCCAATAATTTTAAGATTTACGCATGTTTTTTCAAGCAAAGAATG  693

seq1  TAGGTAAAAATCAATGTGTTTTTTTAAAAATTTTTATTCTTAGCCCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAAAATCAATGTGTTTTTTTAAAAATTTTTATTCTTAGCCCTTTT  743

seq1  AATGTTCAAGTTCTTTGAAAGGAAAAATGGAACAGGACCCAAATTAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCAAGTTCTTTGAAAGGAAAAATGGAACAGGACCCAAATTAACAT  793

seq1  ACTACAATTATTAATATGTTTTAGTGTCTTGTTTTTTAGAAAATAATGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAATTATTAATATGTTTTAGTGTCTTGTTTTTTAGAAAATAATGTC  843

seq1  ACCCCTATGCTTTAAATGTCATGGCCAAACATATTAGGAAATCATGCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTATGCTTTAAATGTCATGGCCAAACATATTAGGAAATCATGCCAT  893

seq1  AATTCTGGACTTCCAAGGGAGGGAGACGTGTGTGTGTGTGTGTGTGGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGACTTCCAAGGGAGGGAGACGTGTGTGTGTGTGTGTGTGGCAT  943

seq1  GTTTGCCCATGAGTGTGTGGAGGTCACAGAGAGGAGATGTGGTGTTTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCCATGAGTGTGTGGAGGTCACAGAGAGGAGATGTGGTGTTTTTA  993

seq1  CTCAACCACTTCTCCACCTTAGTTTTTGAGGCAGCATGTTTCACTGGAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCACTTCTCCACCTTAGTTTTTGAGGCAGCATGTTTCACTGGAAC  1043

seq1  TGGAATTC  1058
      ||||||||
seq2  TGGAATTC  1051