BAC Information

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BAC

Clone NameB6Ng01-011H19
ChromosomeY (Build37)17 (Build37)
Map Location 1,120,600 - 1,120,99592,223,675 - 92,224,809
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011H19.bB6Ng01-011H19.g
ACCDH846857DH846858
length9811,125
definitionDH846857|Mus musculus domesticus DNA, BAC clone: B6Ng01-011H19, 5' end.DH846858|Mus musculus domesticus DNA, BAC clone: B6Ng01-011H19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,600 - 1,120,995)(92,223,675 - 92,224,809)
sequence
gaattcctcagttgaagattctttgtttagatctgttccccaattcttaa
tagggttatttggttttcggcagtccaacttctttagttctttttaaaaa
aatattttattaggtattttcctcatttacatttccaatgctatccctaa
agtccctcataccctcccctccccacttccctaactacccactcccacct
tttggccctggcgttcccctgtactggggcatataaagtttgcaagtcca
atgggcctttctttccagtgatggccaactaggccatcttttgatacata
tgcagctagagtcaagagctcctgggtactggttagttcataatgttgtt
ccatctatagggttgcagatccctttagctccttgggtactttctctact
tcctccattgggcgccctatgatccatccaatagctgactgtgagcatcc
atttctgtgtttgctaggccccagcataatctcacaagagacagctatat
ctgggtcctttcatcaaaatcttgttagtgtatgcaatggtgtcagcatt
tggaagctgattatgggatggatccctggatatggcagtctctagatggt
ccatcctttcgtctcagctccaaactttgtctctgtaactccttccatgg
gtctttagttttttatatatattggatattagcccctatgggatttagga
ttggtgaagatcttttcacaagctattgattgcctttttgtcatattgac
aatgtccttagccttacagaaactttgcaattttatgaggtctcatttgt
tgattcttgatcttacagcacaagccattgctgttctgttcaggaatctt
tcctgagcccatatcttccaggctcttacccactttctccactacaaata
tcagtgtcctctggtttcatgtggattacttgatcccacttagacttgag
gctttgtaaaagaagatagaatggatcaatt
gaattcacttctgcaatagcaatactggttcatttacagctacagcacca
tcacaaagtgattttgtcttaaactttcatgctttaatattgtggcagtc
tgagttacaattcagaatgagtggagaaggaacaaacattagaaccccag
ggtatctttttaaaatatcacaaagttcaaatacatactttctttcctta
ttccattcatttgtctttccttgtatcaaagatacattatccagtaccta
cttcttcttctataaagataaaccaaaataccaggcatatagctatattt
ttaggtgactgaattttctgaaactctgggacttagtaggatagaacatg
gaatattttaagattccaggaagtagataatgactctgctgtgcaggaat
ggaagctgaagaaagcctcacaaaactctcagtgtggatggacagaacta
cagtgtatttgtgtattcttcacatctggcccaggttcacttagatgacc
taaaatctgcacagcagtcatacatgattggagaaagagtttataacagt
ttccaaaaacacaaagatttcagaagccaggatcaaactggagaatgagg
caacttcttgttatgcattatgtgttctgtatttggacttttgtcaaatc
agaaacatcactttttaagagattcattctgaaaaatctgtttgtgttct
taatcatttatactccttttgttatagtttacaaccatagtcagcgtttc
ctttatgatttatgtatttagcagaaataacatttttaagtagtttgtaa
tttattgcctacagttctgtcaggttttattttacaaatctcattgccat
tttgctagtttatatgtcattatttttatacatatgtgctaaattcttct
gcaaagattaaccagtcttctctaattgcttttaatttgcatgctaccac
accccactgttttgcagtgctggcaattgaacctagaccatgttcttgct
agacaaatgctccccccactgagctgttacatcctttgccccatttacat
ctaatagtctgatctgcagtgtttaactacatttaaattttattggatag
cttggcgatatagtttatctgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120600_1120995
seq2: B6Ng01-011H19.b_152_547

seq1  TTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTC  50
      |||||||||||||||  ||||||||||||||||||||||| || ||||||
seq2  TTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCTAAAGTC  50

seq1  CCCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTG  100
      || |||| || |||  ||||||| ||||  | |||||||||| | |||||
seq2  CCTCATACCCTCCCCTCCCCACTTCCCTAACTACCCACTCCCACCTTTTG  100

seq1  GCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGG  150
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGG  150

seq1  GCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCA  200
      |||| ||||||||||||||||| ||||||||||||||||||| |||||||
seq2  GCCTTTCTTTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCA  200

seq1  GCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAACGTTGTTCCAC  250
      |||||||||||||||||| ||||||||||||| |||||| ||||||||| 
seq2  GCTAGAGTCAAGAGCTCCTGGGTACTGGTTAGTTCATAATGTTGTTCCAT  250

seq1  CTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCT  300
      ||||||||||| |||||||||||||||||||| |||||||||||  ||||
seq2  CTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTACTTCCT  300

seq1  CCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTT  350
      |||||||| ||||||||||||||||| |||||||||||||||||||| ||
seq2  CCATTGGGCGCCCTATGATCCATCCAATAGCTGACTGTGAGCATCCATTT  350

seq1  CTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAGACAGCTACAT  396
      ||||||||||| |||||| ||||| |||||||||||||||||| ||
seq2  CTGTGTTTGCTAGGCCCCAGCATAATCTCACAAGAGACAGCTATAT  396

seq1: chr17_92223675_92224809
seq2: B6Ng01-011H19.g_63_1187

seq1  GAATTCACTTCTGCAATAGCAATACTGGTTCATTTACAGCTACAGCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTGCAATAGCAATACTGGTTCATTTACAGCTACAGCACCA  50

seq1  TCACAAAGTGATTTTGTCTTAAACTTTCATGCTTTAATATTGTGGCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGTGATTTTGTCTTAAACTTTCATGCTTTAATATTGTGGCAGTC  100

seq1  TGAGTTACAATTCAGAATGAGTGGAGAAGGAACAAACATTAGAACCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACAATTCAGAATGAGTGGAGAAGGAACAAACATTAGAACCCCAG  150

seq1  GGTATCTTTTTAAAATATCACAAAGTTCAAATACATACTTTCTTTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTTTTTAAAATATCACAAAGTTCAAATACATACTTTCTTTCCTTA  200

seq1  TTCCATTCATTTGTCTTTCCTTGTATCAAAGATACATTATCCAGTACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCATTTGTCTTTCCTTGTATCAAAGATACATTATCCAGTACCTA  250

seq1  CTTCTTCTTCTATAAAGATAAACCAAAATACCAGGCATATAGCTATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTATAAAGATAAACCAAAATACCAGGCATATAGCTATATTT  300

seq1  TTAGGTGACTGAATTTTCTGAAACTCTGGGACTTAGTAGGATAGAACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGACTGAATTTTCTGAAACTCTGGGACTTAGTAGGATAGAACATG  350

seq1  GAATATTTTAAGATTCCAGGAAGTAGATAATGACTCTGCTGTGCAGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTAAGATTCCAGGAAGTAGATAATGACTCTGCTGTGCAGGAAT  400

seq1  GGAAGCTGAAGAAAGCCTCACAAAACTCTCAGTGTGGATGGACAGAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGAAGAAAGCCTCACAAAACTCTCAGTGTGGATGGACAGAACTA  450

seq1  CAGTGTATTTGTGTATTCTTCACATCTGGCCCAGGTTCACTTAGATGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATTTGTGTATTCTTCACATCTGGCCCAGGTTCACTTAGATGACC  500

seq1  TAAAATCTGCACAGCAGTCATACATGATTGGAGAAAGAGTTTATAACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTGCACAGCAGTCATACATGATTGGAGAAAGAGTTTATAACAGT  550

seq1  TTCCAAAAACACAAAGATTTCAGAAGCCAGGATCAAACTGGAGAATGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAACACAAAGATTTCAGAAGCCAGGATCAAACTGGAGAATGAGG  600

seq1  CAACTTCTTGTTATGCATTATGTGTTCTGTATTTGGACTTTTGTCAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTTGTTATGCATTATGTGTTCTGTATTTGGACTTTTGTCAAATC  650

seq1  AGAAACATCACTTTTTAAGAGATTCATTCTGAAAAATCTGTTTGTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATCACTTTTTAAGAGATTCATTCTGAAAAATCTGTTTGTGTTCT  700

seq1  TAATCATTTATACTCCTTTTGTTATAGTTTACAACCATAGTCAGCGTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTTATACTCCTTTTGTTATAGTTTACAACCATAGTCAGCGTTTC  750

seq1  CTTTATGATTTATGTATTTAGCAGAAATAACATTTTTAAGTAGTTTGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGATTTATGTATTTAGCAGAAATAACATTTTTAAGTAGTTTGTAA  800

seq1  TTTATTGCCTACAGTTCTGTCAGGTTTTATTTTACAAATCTCATTGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCCTACAGTTCTGTCAGGTTTTATTTTACAAATCTCATTGCCAT  850

seq1  TTTGCTAGTTTATATGTCATTATTTTTATACATATGTGCTAAATTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGTTTATATGTCATTATTTTTATACATATGTGCTAAATTCTTCT  900

seq1  GCAAAGATTAACCAGTCTTCTCCTAATTGCTTTTAATTTGCATGCTACCA  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAAAGATTAACCAGTCTTCT-CTAATTGCTTTTAATTTGCATGCTACCA  949

seq1  CACCCCACTGTTTTTGCAGTGCTGGCAATTGAACCTAAGACCATGTTCTT  1000
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  CACCCCACTG-TTTTGCAGTGCTGGCAATTGAACCT-AGACCATGTTCTT  997

seq1  GCTAGACAAATGCT-CCCCCACTGAGCTGTTACATCCTTTGCCCCATTTT  1049
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  GCTAGACAAATGCTCCCCCCACTGAGCTGTTACATCCTTTGCCCCA-TTT  1046

seq1  ACATCCTAATAGTCTGATCCTGGCAGTGTTATACTACATTT-AATTTTAT  1098
      |||| ||||||||||||||   ||||||||  ||||||||| ||||||||
seq2  ACAT-CTAATAGTCTGATC--TGCAGTGTTTAACTACATTTAAATTTTAT  1093

seq1  TTGATTAGCTTGTGCGATTATAGTTTATTCATGTCTC  1135
      | || ||||||| |||| ||||||||||   ||||||
seq2  TGGA-TAGCTTG-GCGA-TATAGTTTAT--CTGTCTC  1125