BAC Information

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BAC

Clone NameB6Ng01-012I19
Chromosome17 (Build37)
Map Location 88,265,920 - 88,415,143
singlet/doubletdoublet
Overlap geneLOC626888, LOC668863, EG626920, Msh6, Fbxo11
Upstream gene1700090G07Rik, Atp6v1e2, Rhoq, Pigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12
Downstream geneEG225058, Foxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012I19.bB6Ng01-012I19.g
ACCDH847613DH847614
length1,0941,041
definitionDH847613|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I19, 5' end.DH847614|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,265,920 - 88,267,015)(88,414,104 - 88,415,143)
sequence
gaattctacactatgggacaaggagaagaaggggaccaggaaggtgtagt
cagagagaaatacttgggaggacattaatctctatctaaataagcaaagg
gaagttagcgagaagtgcattgaacttgcttcctgaggctccactggaga
gatcccaggttgtgggtcaagctatatgtcaggtctattcctgcgctgat
atttagcgttggtgtttttgaagtctttttgcctctctccctaggcagcc
tcatctcttcccatggctttaaatatcatcttcaggcagatgacttccaa
atgagtgtccccagcccagatcatttcactgaaatgtgaacttgtacatt
cagctgcctcctctccttcacgccgcagcttgctaccgctctgacagctc
cagtcgggcacatgcagaaatgaactcttgctccacatcccctaacccaa
acctcatcctcccacacgctccccatctcagtaaatggcaccagcctccg
cccggttgtcaagtcggggctctgggagtcatttttggcacttctttctc
acagctctcgtcacccggttttgtgtgtcctacctcctgacgtgcaggcg
gttgcgttcctctgctggtctccaccttctctgtcagccttcatcctcca
agccaccatcagctctctccaggagaccattacagtggatctgaagtgtt
cttcttgccttcccatggtctgcctggaatctcttcttacatacaagagc
caagaaatgcacaacatatcacacacacacacacacacacacacacacac
acacagagagagagagagagagagagagagagagagaggcttacttcttc
cctctgcttaaaacctttcaaggttgtctgttactgtcctgataaagtcc
aggtccctcacgacctacagtcctgcatggtcttccctggctaccgtctc
tcttccaccggtacctgagcctgtcagcctttctcagctcctcaggaaca
taagactctctgacgatactctgtcttcctcagggtctctcgctcttgcc
cttcaccttattagatgctacctttccaataattcatctctttc
gaattccatacaaaattctgttcttccttctcttgccaaatttgacattt
tagtaaaaggactgaccccatttttcttttctgttttacagatgatgttc
ctgcagatatggttgcagaagaatcaggtcctggtgcacaaaatagtcca
taccaacttcgcagaaaaactcttttgccaaaaagaacagcgtgtcctac
aaagagcagtatggaggttagttcattgtaattgtttttgtaatgaaaaa
aatgggtcacgtttttagagaattatatacagtaggaatacttcattgat
aagttttcttcttggttttgaagggtgcctctacttcgactacagaaaac
tttggtcatcgagcaaagcgtgcaagagtgtctggaaagtcacaagatct
ttcaggtattttgaatgggaagtgaagttttaaaagtttatatttgagcc
taggtgtagtgacacatgattttaatcctagcatttaggagtcagaggca
ggggatctctgagttcaagaccatgctggagagtttcaggacagttaggg
ccatatagagagtctagtgatgacggtgatgatggtgatgatatggtaag
tgaaaccgaaaactaaatattatctgaagatattgagtagttactatttt
aaagtacttagagctctaatctttccctctataacttattttaaaattta
tttttacttttaattatgtgtgcttctgtggctaaataagctggaaggag
ggcattgggtttcctggagctggatctacaggctgttgtgagcttcaggt
aataggtgctgagaaccaaaaaagggtccctccgcacgacccgtacaaag
ttaaatgatgagctgtctttccatcctgtcttatttttatataaaagttt
ttgggtttttgtttttgttttttaatagccacactaaatggtatagccat
aaccacttggaagcttaagggcgtggaaagggagtaaaatgagtttcatg
atcagcctaggaagcttttcagaactgcctttaatcacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_88265920_88267015
seq2: B6Ng01-012I19.b_46_1139

seq1  GAATTCTACACTATGGGACAAGGAGAAGAAGGGGACCAGGAAGGTGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACTATGGGACAAGGAGAAGAAGGGGACCAGGAAGGTGTAGT  50

seq1  CAGAGAGAAATACTTGGGAGGACATTAATCTCTATCTAAATAAGCAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAATACTTGGGAGGACATTAATCTCTATCTAAATAAGCAAAGG  100

seq1  GAAGTTAGCGAGAAGTGCATTGAACTTGCTTCCTGAGGCTCCACTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGCGAGAAGTGCATTGAACTTGCTTCCTGAGGCTCCACTGGAGA  150

seq1  GATCCCAGGTTGTGGGTCAAGCTATATGTCAGGTCTATTCCTGCGCTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGGTTGTGGGTCAAGCTATATGTCAGGTCTATTCCTGCGCTGAT  200

seq1  ATTTAGCGTTGGTGTTTTTGAAGTCTTTTTGCCTCTCTCCCTAGGCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCGTTGGTGTTTTTGAAGTCTTTTTGCCTCTCTCCCTAGGCAGCC  250

seq1  TCATCTCTTCCCATGGCTTTAAATATCATCTTCAGGCAGATGACTTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTTCCCATGGCTTTAAATATCATCTTCAGGCAGATGACTTCCAA  300

seq1  ATGAGTGTCCCCAGCCCAGATCATTTCACTGAAATGTGAACTTGTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTCCCCAGCCCAGATCATTTCACTGAAATGTGAACTTGTACATT  350

seq1  CAGCTGCCTCCTCTCCTTCACGCCGCAGCTTGCTACCGCTCTGACAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCTCCTCTCCTTCACGCCGCAGCTTGCTACCGCTCTGACAGCTC  400

seq1  CAGTCGGGCACATGCAGAAATGAACTCTTGCTCCACATCCCCTAACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGGGCACATGCAGAAATGAACTCTTGCTCCACATCCCCTAACCCAA  450

seq1  ACCTCATCCTCCCACACGCTCCCCATCTCAGTAAATGGCACCAGCCTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCCTCCCACACGCTCCCCATCTCAGTAAATGGCACCAGCCTCCG  500

seq1  CCCGGTTGTCAAGTCGGGGCTCTGGGAGTCATTTTTGGCACTTCTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTTGTCAAGTCGGGGCTCTGGGAGTCATTTTTGGCACTTCTTTCTC  550

seq1  ACAGCTCTCGTCACCCGGTTTTGTGTGTCCTACCTCCTGACGTGCAGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTCGTCACCCGGTTTTGTGTGTCCTACCTCCTGACGTGCAGGCG  600

seq1  GTTGCGTTCCTCTGCTGGTCTCCACCTTCTCTGTCAGCCTTCATCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCGTTCCTCTGCTGGTCTCCACCTTCTCTGTCAGCCTTCATCCTCCA  650

seq1  AGCCACCATCAGCTCTCTCCAGGAGACCATTACAGTGGATCTGAAGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATCAGCTCTCTCCAGGAGACCATTACAGTGGATCTGAAGTGTT  700

seq1  CTTCTTGCCTTCCCATGGTCTGCCTGGAATCTCTTCTTACATACAAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCCTTCCCATGGTCTGCCTGGAATCTCTTCTTACATACAAGAGC  750

seq1  CAAGAAATGCACAACATATCACACACACACACACACACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATGCACAACATATCACACACACACACACACACACACACACACAC  800

seq1  ACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTTACTTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTTACTTCTTC  850

seq1  CCTCTGCTTAAAACCTTTCAAGGTTGTCTGTTACTGTCCTGATAAAGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTAAAACCTTTCAAGGTTGTCTGTTACTGTCCTGATAAAGTCC  900

seq1  AGGTCCCTCACGACCTACAGTCCTGCATGGTCTTCCCTGGCTACCGTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTCACGACCTACAGTCCTGCATGGTCTTCCCTGGCTACCGTCTC  950

seq1  TCTTCCACCGGTACCTGAGCCTGTCAGCCTTTCTCAGCTCCTCAGGAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACCGGTACCTGAGCCTGTCAGCCTTTCTCAGCTCCTCAGGAACA  1000

seq1  TAAGACTCTCTGACGATACCTCTGTCTTCCTCAGTGTCTCTCGCTCTTGC  1050
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  TAAGACTCTCTGACGATA-CTCTGTCTTCCTCAGGGTCTCTCGCTCTTGC  1049

seq1  CCTTCACCTTATTAGATGCTACCTTTTCAAATAATTCATCTCTTTC  1096
      ||||||||||||||||||||||| |||| |||||||||||||||||
seq2  CCTTCACCTTATTAGATGCTACC-TTTCCAATAATTCATCTCTTTC  1094

seq1: chr17_88414104_88415143
seq2: B6Ng01-012I19.g_64_1104 (reverse)

seq1  TTTGTG-TTTAAGGCAGTCTTGAAAAGCTTCCTAGGCTGGTCTTG-AACT  48
      |||||| || ||||||||  ||||||||||||||||||| || || ||||
seq2  TTTGTGATTAAAGGCAGTTCTGAAAAGCTTCCTAGGCTGATCATGAAACT  50

seq1  CACTCTAACTTCCTTTTCCAGCCCTTTAGCCTCCCAAGTGGTTATGGCTA  98
      || | | ||| ||||| |  |||||| || || |||||||||||||||||
seq2  CA-TTTTACTCCCTTTCCACGCCCTTAAG-CTTCCAAGTGGTTATGGCTA  98

seq1  TACCATTTAGTGTGGCTATTAAAAAACAAAAAACAAAACCCAAAAACTTT  148
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  TACCATTTAGTGTGGCTATTAAAAAACAAAAACAAAAACCCAAAAACTTT  148

seq1  TATATAAAAATAAGACAGGATGGAAAGACAGCTCATCATTTAACTTTGTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAAATAAGACAGGATGGAAAGACAGCTCATCATTTAACTTTGTA  198

seq1  CGGGTCGTGCGGA-GGACCCTTTTTTGGTTCTCAGCACCTATAACCTGAA  247
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  CGGGTCGTGCGGAGGGACCCTTTTTTGGTTCTCAGCACCTATTACCTGAA  248

seq1  GCTCACAACAGCCTGTAGATCCAGCTCCAGGAAACCCAATGCCCTCCTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACAGCCTGTAGATCCAGCTCCAGGAAACCCAATGCCCTCCTTC  298

seq1  CAGCTTATTTAGCCACAGAAGCACACATAATTAAAAGTAAAAATAAATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATTTAGCCACAGAAGCACACATAATTAAAAGTAAAAATAAATTT  348

seq1  TAAAATAAGTTATAGAGGGAAAGATTAGAGCTCTAAGTACTTTAAAATAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGTTATAGAGGGAAAGATTAGAGCTCTAAGTACTTTAAAATAG  398

seq1  TAACTACTCAATATCTTCAGATAATATTTAGTTTTCGGTTTCACTTACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACTCAATATCTTCAGATAATATTTAGTTTTCGGTTTCACTTACCA  448

seq1  TATCATCACCATCATCACCGTCATCACTAGACTCTCTATATGGCCCTAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCACCATCATCACCGTCATCACTAGACTCTCTATATGGCCCTAAC  498

seq1  TGTCCTGAAACTCTCCAGCATGGTCTTGAACTCAGAGATCCCCTGCCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGAAACTCTCCAGCATGGTCTTGAACTCAGAGATCCCCTGCCTCT  548

seq1  GACTCCTAAATGCTAGGATTAAAATCATGTGTCACTACACCTAGGCTCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTAAATGCTAGGATTAAAATCATGTGTCACTACACCTAGGCTCAA  598

seq1  ATATAAACTTTTAAAACTTCACTTCCCATTCAAAATACCTGAAAGATCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACTTTTAAAACTTCACTTCCCATTCAAAATACCTGAAAGATCTT  648

seq1  GTGACTTTCCAGACACTCTTGCACGCTTTGCTCGATGACCAAAGTTTTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTCCAGACACTCTTGCACGCTTTGCTCGATGACCAAAGTTTTCT  698

seq1  GTAGTCGAAGTAGAGGCACCCTTCAAAACCAAGAAGAAAACTTATCAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCGAAGTAGAGGCACCCTTCAAAACCAAGAAGAAAACTTATCAATG  748

seq1  AAGTATTCCTACTGTATATAATTCTCTAAAAACGTGACCCATTTTTTTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTCCTACTGTATATAATTCTCTAAAAACGTGACCCATTTTTTTCA  798

seq1  TTACAAAAACAATTACAATGAACTAACCTCCATACTGCTCTTTGTAGGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAACAATTACAATGAACTAACCTCCATACTGCTCTTTGTAGGAC  848

seq1  ACGCTGTTCTTTTTGGCAAAAGAGTTTTTCTGCGAAGTTGGTATGGACTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGTTCTTTTTGGCAAAAGAGTTTTTCTGCGAAGTTGGTATGGACTA  898

seq1  TTTTGTGCACCAGGACCTGATTCTTCTGCAACCATATCTGCAGGAACATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCACCAGGACCTGATTCTTCTGCAACCATATCTGCAGGAACATC  948

seq1  ATCTGTAAAACAGAAAAGAAAAATGGGGTCAGTCCTTTTACTAAAATGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAAAACAGAAAAGAAAAATGGGGTCAGTCCTTTTACTAAAATGTC  998

seq1  AAATTTGGCAAGAGAAGGAAGAACAGAATTTTGTATGGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGCAAGAGAAGGAAGAACAGAATTTTGTATGGAATTC  1041