BAC Information

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BAC

Clone NameB6Ng01-012I21
Chromosome10 (Build37)17 (Build37)
Map Location 15,336,625 - 15,337,78111,141,140 - 11,141,214
singlet/doubletsingletsinglet
Overlap geneLOC637043
Upstream geneVta1, D230044M03Rik, EG666904, Nmbr, LOC666917
Downstream geneLOC100039492, LOC671439, LOC382457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012I21.bB6Ng01-012I21.g
ACCDH847617DH847618
length1,145827
definitionDH847617|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I21, 5' end.DH847618|Mus musculus domesticus DNA, BAC clone: B6Ng01-012I21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,336,625 - 15,337,781)(11,141,140 - 11,141,214)
sequence
gaattcatttgggtcactttagtttgatgttgaacttttattttacaatt
ttaagtttttaaataaaatacacgttctcaaatcaaatctcaacaagata
atttctatatcaggccatgcttcttggtttctgtataactgatacttctt
gtgatatacatgcaggttggtgtcaaaaagtgcacaagtatcaagcaact
aatattatttagattcaggatgtatgtcttgtaatttcacagttctttct
ttttcagtaggcctcagtatatttaggtatttgttatcttttcattgctt
tataggttttcatcatatgaccaggtctggacttgaactgtatgctccca
actcagtctcgtgagtctagagattatagccacatgccgccatgtttcac
ttaatatatctttaatgatagaatgtatgactattttttataataatttt
taactgttcaaaaataattgataaaaaatttctctgaaacatcttattga
tcagtcattaaaaatattgtggtcctgcctttgaagattctttttcctat
atttagaacttcatataaggaattatctgcttaatattttcaaaattatt
ttcatattcttatccattaaatatttaccataaattctaaaataaataat
tttgaatattctttaattatacttattttaatatataaaatgaacaattt
tgacagttattttaaaaatacacatttaaacaatggttttctatctttca
agacccatctgtaaccagtaattcagcagagagatgtaggtctaatgtgt
cacttcctagtccatgatgactgttgtccagtattgtgtagtctcagaga
aggaagcttcagtaccgctgctataggattaatgacatgaggtcatctca
cagctatcccggtgaatctctgcccctaaatgccttcccgtttctaccat
gaatcttgagccttagatagattgatatcagtatcctgttttagaattag
cactcaaccatcactgatctaatcctcacacagatctgggtctctgttta
caccactgttattgccagaaaggctctctgatcatgtggagatgctcgtt
tatgtttataatgctagcatttaagtaatgcactggaatctcaaa
gaattctctgacctgttcgtgtgtattctctctctgtctctgtctctgtc
tctctctctctctctgtctctctctctctgtctctgtctctctctctctc
tctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcgcgtgtggt
ttttttttcttttttttttttttttttgctactatccacttattagtgag
tgcataacatgcacgtacttttggggaatgagttacctcattcaggatga
tattttctagttccatccatttacctgaaaaaaaaatcaatatgtcctca
ttcttaatagctgagtactattacattgtgtaaattaaccacattttctt
tacccattcttctgttgtgggacatctaggttgtttccagcttctggcta
tcacaaataaggctgctatgaacatagtagaacatgtacccctgtgacat
ggtggggcatcttttgggtatattcccaagagtggtatagctgggtcttc
aggtagatctatttccaactttctgaggaacctccagattgattttcaga
gtggttgtaccagtttgcaatcccatcagtgatggaggaatgttcctctt
cctccacatcctctccaacatgtgtagtcacctgaggttttgatctttgc
cattctgattggtgtaaagtggaatctcagggtcatttttgattttgcat
ttctctgatcactaaagactttgaaagtttctttaggtgcttctcaccca
ttcaagattcctctgttgtgaattctcagtttagttctatacctccattt
ttgattgggttgtttgagtttttttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_15336625_15337781
seq2: B6Ng01-012I21.b_44_1188 (reverse)

seq1  TTTGAGA-TCCAGTGCATTTACCCTAAAATGCTAGCATTTATAAACATAG  49
      ||||||| |||||||||||    || ||||||||||| ||||||||||| 
seq2  TTTGAGATTCCAGTGCATT---ACTTAAATGCTAGCA-TTATAAACATAA  46

seq1  ACGAGCCATCCTTCCACATTGATCCAGAGAGCCTTTCTGTGCAATAAACA  99
      ||||| ||||  |||||| |||| ||||||||||||||| ||||| ||||
seq2  ACGAG-CATC--TCCACA-TGAT-CAGAGAGCCTTTCTG-GCAAT-AACA  89

seq1  GTGGTGTAAACAGAGACCCAGATCTGTTGTGAGGATAAGAATCAGTGATG  149
      |||||||||||||||||||||||||| ||||||||| || ||||||||||
seq2  GTGGTGTAAACAGAGACCCAGATCTG-TGTGAGGATTAG-ATCAGTGATG  137

seq1  GTTGAGTGCTAATTCTTAAAACAGGATACTGATATCAATCTATCTAAGGC  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTGAGTGCTAATTC-TAAAACAGGATACTGATATCAATCTATCTAAGGC  186

seq1  TCAAGATTCATGGTAGAAACGGGAAGGCATTTAGGGGCAGAGATTCACC-  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAAGATTCATGGTAGAAACGGGAAGGCATTTAGGGGCAGAGATTCACCG  236

seq1  GGATAGCTGTGAGATGACCTCATGTCATTAATCCTATAGCAGCGGTACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCTGTGAGATGACCTCATGTCATTAATCCTATAGCAGCGGTACTG  286

seq1  AAGCTTCCTTCTCTGAGACTACACAATACTGGACAACAGTCATCATGGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCTTCTCTGAGACTACACAATACTGGACAACAGTCATCATGGAC  336

seq1  TAGGAAGTGACACATTAGACCTACATCTCTCTGCTGAATTACTGGTTACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTGACACATTAGACCTACATCTCTCTGCTGAATTACTGGTTACA  386

seq1  GATGGGTCTTGAAAGATAGAAAACCATTGTTTAAATGTGTATTTTTAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTCTTGAAAGATAGAAAACCATTGTTTAAATGTGTATTTTTAAAA  436

seq1  TAACTGTCAAAATTGTTCATTTTATATATTAAAATAAGTATAATTAAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTCAAAATTGTTCATTTTATATATTAAAATAAGTATAATTAAAGA  486

seq1  ATATTCAAAATTATTTATTTTAGAATTTATGGTAAATATTTAATGGATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAAATTATTTATTTTAGAATTTATGGTAAATATTTAATGGATAA  536

seq1  GAATATGAAAATAATTTTGAAAATATTAAGCAGATAATTCCTTATATGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAAAATAATTTTGAAAATATTAAGCAGATAATTCCTTATATGAA  586

seq1  GTTCTAAATATAGGAAAAAGAATCTTCAAAGGCAGGACCACAATATTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAATATAGGAAAAAGAATCTTCAAAGGCAGGACCACAATATTTTT  636

seq1  AATGACTGATCAATAAGATGTTTCAGAGAAATTTTTTATCAATTATTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTGATCAATAAGATGTTTCAGAGAAATTTTTTATCAATTATTTTT  686

seq1  GAACAGTTAAAAATTATTATAAAAAATAGTCATACATTCTATCATTAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTTAAAAATTATTATAAAAAATAGTCATACATTCTATCATTAAAG  736

seq1  ATATATTAAGTGAAACATGGCGGCATGTGGCTATAATCTCTAGACTCACG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAGTGAAACATGGCGGCATGTGGCTATAATCTCTAGACTCACG  786

seq1  AGACTGAGTTGGGAGCATACAGTTCAAGTCCAGACCTGGTCATATGATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGTTGGGAGCATACAGTTCAAGTCCAGACCTGGTCATATGATGA  836

seq1  AAACCTATAAAGCAATGAAAAGATAACAAATACCTAAATATACTGAGGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATAAAGCAATGAAAAGATAACAAATACCTAAATATACTGAGGCC  886

seq1  TACTGAAAAAGAAAGAACTGTGAAATTACAAGACATACATCCTGAATCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAAAGAAAGAACTGTGAAATTACAAGACATACATCCTGAATCTA  936

seq1  AATAATATTAGTTGCTTGATACTTGTGCACTTTTTGACACCAACCTGCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATTAGTTGCTTGATACTTGTGCACTTTTTGACACCAACCTGCAT  986

seq1  GTATATCACAAGAAGTATCAGTTATACAGAAACCAAGAAGCATGGCCTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCACAAGAAGTATCAGTTATACAGAAACCAAGAAGCATGGCCTGA  1036

seq1  TATAGAAATTATCTTGTTGAGATTTGATTTGAGAACGTGTATTTTATTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAATTATCTTGTTGAGATTTGATTTGAGAACGTGTATTTTATTTA  1086

seq1  AAAACTTAAAATTGTAAAATAAAAGTTCAACATCAAACTAAAGTGACCCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAAAATTGTAAAATAAAAGTTCAACATCAAACTAAAGTGACCCA  1136

seq1  AATGAATTC  1157
      |||||||||
seq2  AATGAATTC  1145

seq1: chr17_11141140_11141214
seq2: B6Ng01-012I21.g_420_494 (reverse)

seq1  ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC  50
      |||||||||||||||||||||||| | |||||||||||||||||| ||||
seq2  ACTATGTTCATAGCAGCCTTATTTGTGATAGCCAGAAGCTGGAAACAACC  50

seq1  CAGATGCCCCTCAACAGAGGAATGG  75
       ||||| ||| ||||||| ||||||
seq2  TAGATGTCCCACAACAGAAGAATGG  75