BAC Information

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BAC

Clone NameB6Ng01-013G08
Chromosome17 (Build37)3 (Build37)
Map Location 50,929,325 - 50,930,416136,962,924 - 136,963,046
singlet/doubletsingletsinglet
Overlap geneTbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013G08.bB6Ng01-013G08.g
ACCDH848219DH848220
length1,075174
definitionDH848219|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G08, 5' end.DH848220|Mus musculus domesticus DNA, BAC clone: B6Ng01-013G08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,929,325 - 50,930,416)(136,962,924 - 136,963,046)
sequence
gaattcaactcctgtaactacgagaaaatggaggcccattctcttgcctg
ctgtcaaccagtgaccgttgccggcttctgaaagatgtcttatctctaga
tcctactctagttttttcagtatacgaagcaccaggtcaaggcccactta
agctcctgcttctcattttcttcagatacagccgagaaactgtgaagtct
ctgagttgcttctctcccttcctcatttatttttaggactcatggttaga
cggcccagaagtgacagtccaaaataccctatccacgaaatcctacctta
ctcagacctgcagcatctcctgccatattggttgcacagtcatgggtcct
gggagtcaaggaagtggacatcattgtgagcgccataagaatggtgtgct
ttcctgtttaaggaaggatgtagccctcaggcagaaagacagagtcttaa
tagaggaacaaacagaaaaatcagagtcattgccatggtgcctgtaaaaa
gcccctcccccagctgtgcttgcctttgatccgagcactcgggagtcaga
aacaggcagccagcctggactgcatggtgagttctaaaacagccagggct
gtttccctgtctggaaaaagcaacaacaataataaaagaaaaaaaggtac
ccctcaaaggtctcaagaggtaggtgatccaaactttgatggtacacata
aattctattagagaaatttaacaaaggtagatcctttattttattttatt
ttattttattttgtgataggctctgaataaaatgctttgagctcgtaaat
ttatcttctgtttgatgggcttttaaaagtatattcagtcagagttgatc
aagcatcccgaatgtttgcgcttttatctcccagcctttccaaagccata
aaagctgctttagtagcagagagcataagcagtcataaggaaaaggaaac
cgagccttcatagtaaatgcataactatgtccatagtcatctacagtaga
acatcttctagagacatgagatggtactgtacaagaaacccaccactaca
ccacacccctcgtctatgtggctgc
tagtctctttaccagtgcttgcctgcctgcctgcctgcctgcctgtgtct
ctgcctctgtctatctgtctgtctgtctctgtctctgtctctctctgtct
ctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50929325_50930416
seq2: B6Ng01-013G08.b_47_1121 (reverse)

seq1  GCAGGCACATAGACGAGTGTGTGTGTTAT-GTGTGTGTTTTCTTTGTACA  49
      |||| |||||||||||| | ||||| | | ||| |||  ||  |||||||
seq2  GCAGCCACATAGACGAG-GGGTGTGGTGTAGTG-GTGGGTTTCTTGTACA  48

seq1  GTTCCCATCCTCATGTCCTCCTTAGGAAGATGTTTCCTAACTGTAGATGA  99
      | | |||| ||||||| |||  || |||||||||  || |||||||||||
seq2  G-TACCAT-CTCATGT-CTC--TA-GAAGATGTT--CT-ACTGTAGATGA  89

seq1  CTATGGGACATAGTTTATGCATTTACTATGAAGGCTCGGTTTTCCTTTTT  149
      |||| |||||||| ||||||||||||||||||||||||| ||||||||| 
seq2  CTAT-GGACATAG-TTATGCATTTACTATGAAGGCTCGG-TTTCCTTTT-  135

seq1  CCTTTATGACTTGCTTATTGCTCTTCTGCTACTTAAGCAGCTTTTATGGC  199
       | ||||||| |||||| ||||| ||||||||| ||||||||||||||||
seq2  -CCTTATGAC-TGCTTA-TGCTC-TCTGCTACTAAAGCAGCTTTTATGGC  181

seq1  TTTGGAAAGGCTGGGAGAT-AAAGCGCAAACATTCGGGATGCTTGATCAA  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTGGAAAGGCTGGGAGATAAAAGCGCAAACATTCGGGATGCTTGATCAA  231

seq1  CTCTGACTGAATATACTTTTAAAAGCCCATCAAACAGAAGATAAATTTAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTGAATATACTTTTAAAAGCCCATCAAACAGAAGATAAATTTAC  281

seq1  GAGCTCAAAGCATTTTATTCAGAGCCTATCACAAAATAAAATAAAATAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAAAGCATTTTATTCAGAGCCTATCACAAAATAAAATAAAATAAA  331

seq1  ATAAAATAAAGGATCTACCTTTGTTAAATTTCTCTAATAGAATTTATGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAGGATCTACCTTTGTTAAATTTCTCTAATAGAATTTATGTG  381

seq1  TACCATCAAAGTTTGGATCACCTACCTCTTGAGACCTTTGAGGGGTACCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAAAGTTTGGATCACCTACCTCTTGAGACCTTTGAGGGGTACCT  431

seq1  TTTTTTCTTTTATTATTGTTGTTGCTTTTTCCAGACAGGGAAACAGCCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTATTATTGTTGTTGCTTTTTCCAGACAGGGAAACAGCCCT  481

seq1  GGCTGTTTTAGAACTCACCATGCAGTCCAGGCTGGCTGCCTGTTTCTGAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTTAGAACTCACCATGCAGTCCAGGCTGGCTGCCTGTTTCTGAC  531

seq1  TCCCGAGTGCTCGGATCAAAGGCAAGCACAGCTGGGGGAGGGGCTTTTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTGCTCGGATCAAAGGCAAGCACAGCTGGGGGAGGGGCTTTTTA  581

seq1  CAGGCACCATGGCAATGACTCTGATTTTTCTGTTTGTTCCTCTATTAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCATGGCAATGACTCTGATTTTTCTGTTTGTTCCTCTATTAAGA  631

seq1  CTCTGTCTTTCTGCCTGAGGGCTACATCCTTCCTTAAACAGGAAAGCACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTTCTGCCTGAGGGCTACATCCTTCCTTAAACAGGAAAGCACA  681

seq1  CCATTCTTATGGCGCTCACAATGATGTCCACTTCCTTGACTCCCAGGACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTATGGCGCTCACAATGATGTCCACTTCCTTGACTCCCAGGACC  731

seq1  CATGACTGTGCAACCAATATGGCAGGAGATGCTGCAGGTCTGAGTAAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTGTGCAACCAATATGGCAGGAGATGCTGCAGGTCTGAGTAAGGT  781

seq1  AGGATTTCGTGGATAGGGTATTTTGGACTGTCACTTCTGGGCCGTCTAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCGTGGATAGGGTATTTTGGACTGTCACTTCTGGGCCGTCTAAC  831

seq1  CATGAGTCCTAAAAATAAATGAGGAAGGGAGAGAAGCAACTCAGAGACTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTCCTAAAAATAAATGAGGAAGGGAGAGAAGCAACTCAGAGACTT  881

seq1  CACAGTTTCTCGGCTGTATCTGAAGAAAATGAGAAGCAGGAGCTTAAGTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTCTCGGCTGTATCTGAAGAAAATGAGAAGCAGGAGCTTAAGTG  931

seq1  GGCCTTGACCTGGTGCTTCGTATACTGAAAAAACTAGAGTAGGATCTAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGACCTGGTGCTTCGTATACTGAAAAAACTAGAGTAGGATCTAGA  981

seq1  GATAAGACATCTTTCAGAAGCCGGCAACGGTCACTGGTTGACAGCAGGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGACATCTTTCAGAAGCCGGCAACGGTCACTGGTTGACAGCAGGCA  1031

seq1  AGAGAATGGGCCTCCATTTTCTCGTAGTTACAGGAGTTGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGGGCCTCCATTTTCTCGTAGTTACAGGAGTTGAATTC  1075

seq1: chr3_136962924_136963046
seq2: B6Ng01-013G08.g_116_246 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACACAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAG--AGAGAGAGAAAGAG--AGAGAC  96
      ||||||||||||||||||||||||||  ||||||||| ||||  ||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGACAGAGACAGAGAC  100

seq1  AGACAGACAGACAGACAG----ACAGACACA  123
      ||||||||||| ||||||    | |||||||
seq2  AGACAGACAGATAGACAGAGGCAGAGACACA  131