BAC Information

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BAC

Clone NameB6Ng01-015D02
Chromosome17 (Build37)
Map Location 18,267,916 - 18,268,976
singlet/doubletsinglet
Overlap geneEG665210
Upstream geneZfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021
Downstream geneVmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070, Vmn2r-ps115, Vmn2r-ps117, LOC100042183, EG627367, EG224552
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015D02.bB6Ng01-015D02.g
ACCDH849520DH849521
length1,136976
definitionDH849520|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D02, 5' end.DH849521|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgatctgcccaatacttttaatatgaaggggtgttttatattg
acaaatgctttttttcagcttctattgaggtaatcacatgattttccatt
agtttatttacatagtggattttattaatgtacttttgtacattgaacca
tctctgtatccccaaaattcttcacgagaattcctacagctgatataact
actcaataatgtagttgtatacaaaattaactcaaagaaattagtaccaa
cctatacataaacaataaaaggtctgagaagggagttagagaaacaatat
tgttgacaataaacacaaataacagcaacttcatgtagctctaaccaagt
aaatgaaggatctgtatgatacaaacttcaggtctctgaagagagaaatt
gcgaacgatatcaaaagatgaaaacatctcccttgcttgtagttcagtag
aattaacacagagcaaatgaccagctaaccaacagcaatatccagattca
aattaaatttccaacacaattcttcacaaattttgaaacaacaattatca
acttcaaatggaggcttctgattcttatgaagtgtccacactattttctt
ttaataccaactttgaataataataatttttactctaaaaatttcaccca
agtgaaatacttacacacacacacacacacacacacacagagacaaacac
acaaaacacacacacatgaatatataaatgaaaatttgaattatcctatg
tgtccatataaagagttattcacaaactaagaacaaatctggccagtgtc
tattaatttattatattgtacaaacagtatgcagcacaaagaaatgataa
acactaaatttgaaagtattgcttatcgaagttgagcagtaaggtaaaac
tattctttatatatttaaaatattaattcaatgttattaaataaaattga
aactctgtcaattatattttaagaaatataaaaatatcatgttagacact
gtcttggggttttactgctgtgacaaataaccacgacaaagcagaacaat
attaagcacatttaattggggactgggtttaccagtcaggagaatctata
tcaatatcatcaaggtagggagcatgggcatcatcc
gaattccttgttccacttagacttgagcatgtacaatgagacaagaatga
atcaattcttttttttttttaacatgctaacaaccatttgagccagcacc
agttgttgaaaatgctgtcttcttttcactggatggttttagctcctttg
tcaaagatcaagggaccagaggtctgtgggttcatttctggttctttgat
tctattccactgatttacctatctgtcactcttccagtaccatgcacttt
ttatcacaattgctctgtattacagcttgaggtcaggcatcatgattaca
ccagaggttcttttattattgaaaatagtttttgctatcctgcgtttttg
ttattctaaatgaatttgcaaattgccccttctaactttgtgaagaattg
agttggaattttgatggggattgcattgaatctgtacattgctttctgca
agatagacttttttacaataataatcctgccaatccatgagcaggggaga
tctttccatcttctgaggtctttgatttctttcttcagagacttgaagtt
cttatgatacagacatttcacttccttaggtagagtcacaccaaggtatt
ttttagtagttttgactattatgaagggtgttgtttccctaatttctttc
tcagcctatttatcctttgtgtagagaaaggccactgattttttgaggta
attttatattcagctacttcactgaagtttattatcaggtttaggagttc
tcttatggagttttagggggtgagcacttatatatactatcaggtcatct
gcaaatagtgatatttttatttcttcatttgcagtttgtattccttttga
tctccttttgttgtctaattgctctggctaggaattcagtactatattga
ttaggtagggagtgagtggtcaccctggtcaggccctgatttaaaaggaa
tagcttaagttttctctccattgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_18267916_18268976
seq2: B6Ng01-015D02.b_113_1183

seq1  CAGCTTCTATTGAGGTAATCACATGATTTTCCATTAGTTTATTTACATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTATTGAGGTAATCACATGATTTTCCATTAGTTTATTTACATAG  50

seq1  TGGATTTTATTAATGTACTTTTGTACATTGAACCATCTCTGTATCCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTATTAATGTACTTTTGTACATTGAACCATCTCTGTATCCCCAA  100

seq1  AATTCTTCACGAGAATTCCTACAGCTGATATAACTACTCAATAATGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCACGAGAATTCCTACAGCTGATATAACTACTCAATAATGTAGT  150

seq1  TGTATACAAAATTAACTCAAAGAAATTAGTACCAACCTATACATAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACAAAATTAACTCAAAGAAATTAGTACCAACCTATACATAAACAA  200

seq1  TAAAAGGTCTGAGAAGGGAGTTAGAGAAACAATATTGTTGACAATAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTCTGAGAAGGGAGTTAGAGAAACAATATTGTTGACAATAAACA  250

seq1  CAAATAACAGCAACTTCATGTAGCTCTAACCAAGTAAATGAAGGATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACAGCAACTTCATGTAGCTCTAACCAAGTAAATGAAGGATCTGT  300

seq1  ATGATACAAACTTCAGGTCTCTGAAGAGAGAAATTGCGAACGATATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACAAACTTCAGGTCTCTGAAGAGAGAAATTGCGAACGATATCAAA  350

seq1  AGATGAAAACATCTCCCTTGCTTGTAGTTCAGTAGAATTAACACAGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAACATCTCCCTTGCTTGTAGTTCAGTAGAATTAACACAGAGCA  400

seq1  AATGACCAGCTAACCAACAGCAATATCCAGATTCAAATTAAATTTCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCAGCTAACCAACAGCAATATCCAGATTCAAATTAAATTTCCAAC  450

seq1  ACAATTCTTCACAAATTTTGAAACAACAATTATCAACTTCAAATGGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTTCACAAATTTTGAAACAACAATTATCAACTTCAAATGGAGGC  500

seq1  TTCTGATTCTTATGAAGTGTCCACACTATTTTCTTTTAATACCAACTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTCTTATGAAGTGTCCACACTATTTTCTTTTAATACCAACTTTG  550

seq1  AATAATAATAATTTTTACTCTAAAAATTTCACCCAAGTGAAATACTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATTTTTACTCTAAAAATTTCACCCAAGTGAAATACTTACA  600

seq1  CACACACACACACACACACACACAGAGACAAACACAC-AAACACACACAC  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACACACACACACACACACACACAGAGACAAACACACAAAACACACACAC  650

seq1  ATGAATATATAAATGAAAATTTGAATTATCCTATGTGTCCATATAAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATATAAATGAAAATTTGAATTATCCTATGTGTCCATATAAAGAG  700

seq1  TTATTCACAAACTAAGAACAAATCTGGCCAGTGTCTATTAATTTATTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACAAACTAAGAACAAATCTGGCCAGTGTCTATTAATTTATTATA  750

seq1  TTGTAC-AACAGTATGCAGCACAAAGAAATGATAAACACTAAATTTGAAA  798
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAACAGTATGCAGCACAAAGAAATGATAAACACTAAATTTGAAA  800

seq1  GTATTGCTTATCGAAGTTGAGCAGTAAGGTAATACTATTCTTTATATA-T  847
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  GTATTGCTTATCGAAGTTGAGCAGTAAGGTAAAACTATTCTTTATATATT  850

seq1  TAAAATATTAATTCAATGTTATTAAATAAAATTGACACTCTGTCAATTAT  897
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAAATATTAATTCAATGTTATTAAATAAAATTGAAACTCTGTCAATTAT  900

seq1  ATTTTAAGAAATATAAAAATATCATGTTAGACACTGTCTTGGGGTTTTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGAAATATAAAAATATCATGTTAGACACTGTCTTGGGGTTTTAC  950

seq1  TGCTGTGAACAAAT-ACCACGACAAAGGCAGAAC-ATA-TAAGCACATTT  994
      ||||||| |||||| ||||||||||| ||||||| ||| |||||||||||
seq2  TGCTGTG-ACAAATAACCACGACAAA-GCAGAACAATATTAAGCACATTT  998

seq1  AATT-GGGACT-GGTTTACCAGTCA-GAG-ATCTA-ATCAATTATCATCA  1039
      |||| |||||| ||||||||||||| ||| ||||| ||||| ||||||||
seq2  AATTGGGGACTGGGTTTACCAGTCAGGAGAATCTATATCAA-TATCATCA  1047

seq1  AGGTA-GGAGCAT-GGCATCATCC  1061
      ||||| ||||||| ||||||||||
seq2  AGGTAGGGAGCATGGGCATCATCC  1071