BAC Information

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BAC

Clone NameB6Ng01-016P13
Chromosome17 (Build37)
Map Location 43,666,912 - 43,817,499
singlet/doubletdoublet
Overlap geneLOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1
Upstream geneOpn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a
Downstream geneDscr1l1, Enpp5, Enpp4, Clic5, Runx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016P13.bB6Ng01-016P13.g
ACCDH850785DH850786
length1,172637
definitionDH850785|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P13, 5' end.DH850786|Mus musculus domesticus DNA, BAC clone: B6Ng01-016P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,666,912 - 43,668,107)(43,816,863 - 43,817,499)
sequence
gaattccactaaaaatgaaaaaacagaaaacaaaacaaaacaaaacaaaa
cccaagcaagcaataaagaaacaacagcaacaaaatcgttcgtggactct
aaagtggagtccttgagaacttagaagctattttcttagctgttctccct
tccaagcctggtgtttacagactggcactaagtactttgtagccccttta
ggatgctctactgacacagatgtttatacttgaagcttagtaaagacatt
tgtgagaatgaaacaatccatgaatcactgtgccggactatatgccatgc
ctcgtgtgctggactttctaagtgcacttactgataggactccaaagctg
ctataccgttgctcttcttgattcccataaacatatacccacacacataa
aataacaaattaaaagggaaggagatggaaaagggctgggaaagcggctt
ggtggttaaaagtgttcaccatgcacgcatacaaattggcgtttggatcc
tcagggctcgtgtaaatgccaggcaggtgccatggctcctttgtaattcc
agccttggaagttgggggcaggggattcctcagagcaagctagctggaag
actggctatactagtgtcttagggtttttactgttgtgaagacaccatgg
ccatggcaattcttatagggaaacatctcattggagctgacttacagttc
agaggcttagtccattattatcatggtgggaagcttggcggcacacaggc
ccacatggtgccagttggaacatggtcaaaagaatagtgaacagtgcctt
ggggagcaagcagtgagggaggctccaggagaaaaagcagagggcctttt
acctcagtcattttgttccctggattgctctcggtatgatttcatgcctc
ctgtgacaaacacttacattcatttagaagacatgtttattcttgttgga
tgtctgatcatagttatagaaaccaatctcgttattgtactctgaatttg
atatggcctcctgctttgctttcatgctttccagatatatctttagtgct
tgccagtatgttttaattgacctgttctgagaaattcttggagtatttta
tctgtaatattagtaggctactttatttatttacacctgttttcggaact
caatcttctgacattgctttgt
gaattctatatggcaaatatataactgttacaaccacggaggagaaattc
atttgtgtgtgtcaatgacggctggttggtttgctcaccatcaactgaga
ctgctcaactagaaactgaccattctttagaatttaaatgagtttttaag
aactctcatagtggcctggttagagtacattaatctaccaggtgaatttt
gaaatccaacaggcttgtttctaatctgaagattagaacaagcacggttt
accttacaaagtcattcaggtccattgttccatgagtgcctaaaccttcc
agttgctcatgaagttcttcagttagcggcccagtaaagtgatgtgtgtt
gaaagttcccatcttccctttcatcaaggcatacagtcgctcatgcagtg
cagagaagacattctttggaatccatgctaaagacaaagggaattgtttt
caaaagaggcaacgatcccttgtggcatatagtctatatcactgtcagtg
tcctcacagcacataaaatcattaaatctgtgtgcaaagtcatctgtgag
tgagagggctgatcccttcttcctccagatctacattcaaggtatatcta
aagtgaactagaagatggggggatgggtattggaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_43666912_43668107
seq2: B6Ng01-016P13.b_45_1216

seq1  GAATTCCACTAAAAATGAAAAAACAGAAAACAAAACAAAACAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAAAAATGAAAAAACAGAAAACAAAACAAAACAAAACAAAA  50

seq1  CCCAAGCAAGCAATAAAGAAACAACAGCAACAAAATCGTTCGTGGACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCAAGCAATAAAGAAACAACAGCAACAAAATCGTTCGTGGACTCT  100

seq1  AAAGTGGAGTCCTTGAGAACTTAGAAGCTATTTTCTTAGCTGTTCTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAGTCCTTGAGAACTTAGAAGCTATTTTCTTAGCTGTTCTCCCT  150

seq1  TCCAAGCCTGGTGTTTACAGACTGGCACTAAGTACTTTGTAGCCCCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCCTGGTGTTTACAGACTGGCACTAAGTACTTTGTAGCCCCTTTA  200

seq1  GGATGCTCTACTGACACAGATGTTTATACTTGAAGCTTAGTAAAGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTCTACTGACACAGATGTTTATACTTGAAGCTTAGTAAAGACATT  250

seq1  TGTGAGAATGAAACAATCCATGAATCACTGTGCCGGACTATATGCCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAATGAAACAATCCATGAATCACTGTGCCGGACTATATGCCATGC  300

seq1  CTCGTGTGCTGGACTTTCTAAGTGCACTTACTGATAGGACTCCAAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGTGCTGGACTTTCTAAGTGCACTTACTGATAGGACTCCAAAGCTG  350

seq1  CTATACCGTTGCTCTTCTTGATTCCCATAAACATATACCCACACACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCGTTGCTCTTCTTGATTCCCATAAACATATACCCACACACATAA  400

seq1  AATAACAAATTAAAAGGGAAGGAGATGGAAAAGGGCTGGGAAAGCGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAATTAAAAGGGAAGGAGATGGAAAAGGGCTGGGAAAGCGGCTT  450

seq1  GGTGGTTAAAAGTGTTCACCATGCACGCATACAAATTGGCGTTTGGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTAAAAGTGTTCACCATGCACGCATACAAATTGGCGTTTGGATCC  500

seq1  TCAGGGCTCGTGTAAATGCCAGGCAGGTGCCATGGCTCCTTTGTAATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTCGTGTAAATGCCAGGCAGGTGCCATGGCTCCTTTGTAATTCC  550

seq1  AGCCTTGGAAGTTGGGGGCAGGGGATTCCTCAGAGCAAGCTAGCTGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGAAGTTGGGGGCAGGGGATTCCTCAGAGCAAGCTAGCTGGAAG  600

seq1  ACTGGCTATACTAGTGTCTTAGGGTTTTTACTGTTGTGAAGACACCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTATACTAGTGTCTTAGGGTTTTTACTGTTGTGAAGACACCATGG  650

seq1  CCATGGCAATTCTTATAGGGAAACATCTCATTGGAGCTGACTTACAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAATTCTTATAGGGAAACATCTCATTGGAGCTGACTTACAGTTC  700

seq1  AGAGGCTTAGTCCATTATTATCATGGTGGGAAGCTTGGCGGCACACAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTAGTCCATTATTATCATGGTGGGAAGCTTGGCGGCACACAGGC  750

seq1  CCACATGGTGCCAGTTGGAACATGGTCAAAAGAATAGTGAACAGTGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGTGCCAGTTGGAACATGGTCAAAAGAATAGTGAACAGTGCCTT  800

seq1  GGGGAGCAAGCAGTGAGGGAGGCTCCAGGAGAAAAAGCAGAGGGCCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCAAGCAGTGAGGGAGGCTCCAGGAGAAAAAGCAGAGGGCCTTTT  850

seq1  ACCTCAGGTCATTTTGTTCCCTGGATTGCTCTCGGGTATGATTTCATGCC  900
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCTCA-GTCATTTTGTTCCCTGGATTGCTCTC-GGTATGATTTCATGCC  898

seq1  TCCTGTGACAAACACTTACATTCAATTTAGAAGACATGTTTATTCTTGTT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCTGTGACAAACACTTACATTC-ATTTAGAAGACATGTTTATTCTTGTT  947

seq1  GGATGTCTGATCATAGTTATAGAAACCAATCTCGTTATTGTACTCTGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCTGATCATAGTTATAGAAACCAATCTCGTTATTGTACTCTGAAT  997

seq1  TTGGATATGGCCTCCTGCCTTGCTTTCATGCTTTCCCAGATATAATCTTT  1050
      || ||||||||||||||| ||||||||||||||| |||||||| ||||||
seq2  TT-GATATGGCCTCCTGCTTTGCTTTCATGCTTT-CCAGATAT-ATCTTT  1044

seq1  AGTGCTTGCCAGGTATTGTGTTTAAATTGACCTGTCCTGAGAAAATTCTT  1100
      ||||||||||||    | ||||| ||||||||||| ||||| ||||||||
seq2  AGTGCTTGCCAG----TATGTTTTAATTGACCTGTTCTGAG-AAATTCTT  1089

seq1  GGAAAGTATTGTA-CTGTAAATATTTAGTATGTGCTTACTGTTATTTATT  1149
      ||  |||||| || |||| |||| ||||||   |  |||| |||||||||
seq2  GG--AGTATTTTATCTGT-AATA-TTAGTA---GGCTACT-TTATTTATT  1131

seq1  TACACCTTGTTTTTCTGAACTCAATCTTCCTTGGACTATTGCTTTGT  1196
      |||||||   ||||| |||||||||||||    ||| ||||||||||
seq2  TACACCT--GTTTTCGGAACTCAATCTTC---TGAC-ATTGCTTTGT  1172

seq1: chr17_43816863_43817499
seq2: B6Ng01-016P13.g_68_704 (reverse)

seq1  TGTTCCAATACCCATCCCCCCATCTTCTAGTTCACTTTAGATATACCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAATACCCATCCCCCCATCTTCTAGTTCACTTTAGATATACCTTG  50

seq1  AATGTAGATCTGGAGGAAGAAGGGATCAGCCCTCTCACTCACAGATGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGATCTGGAGGAAGAAGGGATCAGCCCTCTCACTCACAGATGACT  100

seq1  TTGCACACAGATTTAATGATTTTATGTGCTGTGAGGACACTGACAGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACAGATTTAATGATTTTATGTGCTGTGAGGACACTGACAGTGAT  150

seq1  ATAGACTATATGCCACAAGGGATCGTTGCCTCTTTTGAAAACAATTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTATATGCCACAAGGGATCGTTGCCTCTTTTGAAAACAATTCCCT  200

seq1  TTGTCTTTAGCATGGATTCCAAAGAATGTCTTCTCTGCACTGCATGAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTAGCATGGATTCCAAAGAATGTCTTCTCTGCACTGCATGAGCG  250

seq1  ACTGTATGCCTTGATGAAAGGGAAGATGGGAACTTTCAACACACATCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGCCTTGATGAAAGGGAAGATGGGAACTTTCAACACACATCACT  300

seq1  TTACTGGGCCGCTAACTGAAGAACTTCATGAGCAACTGGAAGGTTTAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGGCCGCTAACTGAAGAACTTCATGAGCAACTGGAAGGTTTAGGC  350

seq1  ACTCATGGAACAATGGACCTGAATGACTTTGTAAGGTAAACCGTGCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGGAACAATGGACCTGAATGACTTTGTAAGGTAAACCGTGCTTGT  400

seq1  TCTAATCTTCAGATTAGAAACAAGCCTGTTGGATTTCAAAATTCACCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCTTCAGATTAGAAACAAGCCTGTTGGATTTCAAAATTCACCTGG  450

seq1  TAGATTAATGTACTCTAACCAGGCCACTATGAGAGTTCTTAAAAACTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAATGTACTCTAACCAGGCCACTATGAGAGTTCTTAAAAACTCAT  500

seq1  TTAAATTCTAAAGAATGGTCAGTTTCTAGTTGAGCAGTCTCAGTTGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCTAAAGAATGGTCAGTTTCTAGTTGAGCAGTCTCAGTTGATGG  550

seq1  TGAGCAAACCAACCAGCCGTCATTGACACACACAAATGAATTTCTCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAACCAACCAGCCGTCATTGACACACACAAATGAATTTCTCCTCC  600

seq1  GTGGTTGTAACAGTTATATATTTGCCATATAGAATTC  637
      |||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTAACAGTTATATATTTGCCATATAGAATTC  637