BAC Information

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BAC

Clone NameB6Ng01-017B15
Chromosome17 (Build37)
Map Location 65,593,136 - 65,766,802
singlet/doubletdoublet
Overlap geneE130009J12Rik
Upstream genePja2, LOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneLOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017B15.bB6Ng01-017B15.g
ACCDH850878DH850879
length1,149882
definitionDH850878|Mus musculus domesticus DNA, BAC clone: B6Ng01-017B15, 5' end.DH850879|Mus musculus domesticus DNA, BAC clone: B6Ng01-017B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,593,136 - 65,594,276)(65,765,925 - 65,766,802)
sequence
gaattcaaccttgatcaagcctgtctttcacaagtactgtgagtggaaag
caactgccaagtgcaatcagatctctttctcttttcattgctatgacaat
gcacagcgaatgggaacacaggagcacctgcgtatccacacggagacacc
agcctgtcttcaattgccttgccgccccaccagctcaggttgatgcaatc
gtggccattgatttatcaaacacatgatgtttctgagggggaagattaaa
tagaccatattaaagtagctccatctccatttccaacagcagcaatgcca
agaagcataaaactccatggcataaagttatatctgtacttacttggagc
acaccatatcccaacaaaactgaagacatccgactaacatttagagcctt
cgtttaagtgttaagcttttatctttaccaagttagtactaagtgtgttt
cataaatttccaggtgtttacaaaagaaggatatttaattccatccttgg
tttgcatcataatttgtacaagattttgaaagctggaacttgaaagttga
aatctgtcctttaaaataaaaattattattatttttaagtttttaggaaa
acatatgaagaattggtcatattagatacgaatttcagagcatggggata
ttgtacgtcagtagtaatatggttgcctggagtgcacatggtgcggaatt
tggatcccagcacctcaaaagaaaagaaaaatacacctttcaaatttaaa
aaaaattgttacacatttttaacatatttacctggtggattagcttcttc
atcaccttagaagaatttctcagcactcagaaagaaaaaagaaaaaaaaa
aaaaaaaaaaaaaacagaaagcccagctttggtggcttcatggtctatgc
caaactcacattttcagatttgacctctttttacccctgttcccgtctca
cagccccagctcggtggcactcctttacttttctttaagcaacctaaacc
tcaaaaacacaaacaaacaaaaaagtctcattgctatgcagaactcaata
gtaatgtactaaaaatcttaaggcttcttatagtcaaatgacttgtcttt
ggcaggtcttgtcattttattaagggagcccagaaaaagatcaggattt
gaattctaggaagtgtggacacgcggacacacggatgcaggaccaaaggg
ctacactggctggcttccctaatcactcgtttagtgtctgagacgatgtt
tctgaacctggagttgagtctggctggggaatccccttgtctttgccacc
ctcggtgctgatgttgcaggctgtgctgccaatgggctggggggggacta
gaactcaggtcacgaacgacattttttgttgttgttttctgtagcacacc
tgcaaacataccattcttattatattgctttacttcccaaggttgtcttg
aaaagttttctccttattattccttgttttgctttgggatataaacgtgt
gtgaaaattacctgtctctgttgtcataatctgtatctcaaggtagtgca
aatttggcttagtgaaactgaaaagaaatcaaggaatccgtctagcattt
taagtatatttataagcatcatggttggtcctgatgaaaaaaacaaacca
cttttgtccttttcagctatagctccagaaaataattatttataatgaac
agatctccatcatttacagttggagaagatcatgaaatttaagtaaggca
agtcccaccaatttccttagttattcacaaatatcttggcaccctacttg
gcatcctcttccagtcaactatcacattctaataaaagaatgtgctaact
ttcattctctggccactaacagtccctgcaaaaactgggagcttattttt
taagaatggttctcttcagttttattctgttgcccacttgcttaatatat
gcaacaggaatcaattgtgattatatataacaaataacttttaggtacta
cttatatgtaaaatgtattttgtatgtatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_65593136_65594276
seq2: B6Ng01-017B15.b_47_1195

seq1  GAATTCAACCTTGATCAAGCCTGTCTTTCACAAGTACTGTGAGTGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTGATCAAGCCTGTCTTTCACAAGTACTGTGAGTGGAAAG  50

seq1  CAACTGCCAAGTGCAATCAGATCTCTTTCTCTTTTCATTGCTATGACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCAAGTGCAATCAGATCTCTTTCTCTTTTCATTGCTATGACAAT  100

seq1  GCACAGCGAATGGGAACACAGGAGCACCTGCGTATCCACACGGAGACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCGAATGGGAACACAGGAGCACCTGCGTATCCACACGGAGACACC  150

seq1  AGCCTGTCTTCAATTGCCTTGCCGCCCCACCAGCTCAGGTTGATGCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCTTCAATTGCCTTGCCGCCCCACCAGCTCAGGTTGATGCAATC  200

seq1  GTGGCCATTGATTTATCAAACACATGATGTTTCTGAGGGGGAAGATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATTGATTTATCAAACACATGATGTTTCTGAGGGGGAAGATTAAA  250

seq1  TAGACCATATTAAAGTAGCTCCATCTCCATTTCCAACAGCAGCAATGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCATATTAAAGTAGCTCCATCTCCATTTCCAACAGCAGCAATGCCA  300

seq1  AGAAGCATAAAACTCCATGGCATAAAGTTATATCTGTACTTACTTGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATAAAACTCCATGGCATAAAGTTATATCTGTACTTACTTGGAGC  350

seq1  ACACCATATCCCAACAAAACTGAAGACATCCGACTAACATTTAGAGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATATCCCAACAAAACTGAAGACATCCGACTAACATTTAGAGCCTT  400

seq1  CGTTTAAGTGTTAAGCTTTTATCTTTACCAAGTTAGTACTAAGTGTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTAAGTGTTAAGCTTTTATCTTTACCAAGTTAGTACTAAGTGTGTTT  450

seq1  CATAAATTTCCAGGTGTTTACAAAAGAAGGATATTTAATTCCATCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTTCCAGGTGTTTACAAAAGAAGGATATTTAATTCCATCCTTGG  500

seq1  TTTGCATCATAATTTGTACAAGATTTTGAAAGCTGGAACTTGAAAGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCATAATTTGTACAAGATTTTGAAAGCTGGAACTTGAAAGTTGA  550

seq1  AATCTGTCCTTTAAAATAAAAATTATTATTATTTTTAAGTTTTTAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCCTTTAAAATAAAAATTATTATTATTTTTAAGTTTTTAGGAAA  600

seq1  ACATATGAAGAATTGGTCATATTAGATACGAATTTCAGAGCATGGGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAAGAATTGGTCATATTAGATACGAATTTCAGAGCATGGGGATA  650

seq1  TTGTACGTCAGTAGTAATATGGTTGCCTGGAGTGCACATGGTGCGGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACGTCAGTAGTAATATGGTTGCCTGGAGTGCACATGGTGCGGAATT  700

seq1  TGGATCCCAGCACCTCAAAAGAAAAGAAAAATACACCTTTCAAATTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCAGCACCTCAAAAGAAAAGAAAAATACACCTTTCAAATTTAAA  750

seq1  AAAAATTGTTACACA-TTTTAACATATTTACCTGGTGGATTAGCTTCTTC  799
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAAATTGTTACACATTTTTAACATATTTACCTGGTGGATTAGCTTCTTC  800

seq1  ATCACCTTAGAAGAATTTCTCAGCACTCAGAAAGAAAAAAGAAAAAAAAA  849
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  ATCACCTTAGAAGAATTTCTCAGCACTCAGAAAGAAAAAAG--AAAAAAA  848

seq1  AAAAAAAAAAAAAAAACAGAAAGCCCAGCTCTTGTGGCTTCATGGTCTAT  899
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  AAAAAAAAAAAAAAAACAGAAAGCCCAGCTTTGGTGGCTTCATGGTCTAT  898

seq1  GCCAAACTCACA-TTTCAGATTTGACCTCTTTTTACCCCTG-TCCCGTCT  947
      |||||||||||| |||||||||||||||||||||||||||| ||||||||
seq2  GCCAAACTCACATTTTCAGATTTGACCTCTTTTTACCCCTGTTCCCGTCT  948

seq1  --CAGCACCAGCTCGGTGGCACT-CTTTACTTTTCTTTAAGCACACTAAA  994
        |||| |||||||||||||||| |||||||||||||||||||  |||||
seq2  CACAGCCCCAGCTCGGTGGCACTCCTTTACTTTTCTTTAAGCAACCTAAA  998

seq1  -CTC-AAAACACAAACAAACAAAAAAGTCTCA-TGCTA-GCAGAGCTCAA  1040
       ||| ||||||||||||||||||||||||||| ||||| ||||| |||||
seq2  CCTCAAAAACACAAACAAACAAAAAAGTCTCATTGCTATGCAGAACTCAA  1048

seq1  TAGTAATGTAACTAAAAATC-TCAGGC-TCTTATAGTCAAATGACTCTGT  1088
      ||||||||| |||||||||| | |||| |||||||||||||||||| |||
seq2  TAGTAATGT-ACTAAAAATCTTAAGGCTTCTTATAGTCAAATGACT-TGT  1096

seq1  CTTT-GCAGGTC-TGTCATTTTTATTAAGGAAGCCCAGAGAAAGAATCAG  1136
      |||| ||||||| ||||| ||||||||||| |||||||| |||| |||||
seq2  CTTTGGCAGGTCTTGTCA-TTTTATTAAGGGAGCCCAGAAAAAG-ATCAG  1144

seq1  GATTT  1141
      |||||
seq2  GATTT  1149

seq1: chr17_65765925_65766802
seq2: B6Ng01-017B15.g_70_951 (reverse)

seq1  CATATACATACAAAATACA-TTTACATATAAGTAGTACCT-AAAGTTATT  48
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  CATATACATACAAAATACATTTTACATATAAGTAGTACCTAAAAGTTATT  50

seq1  TTGTATATATAATCACAATTGATTCCTGTTGCATATATTAAGCAAGTGGG  98
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATATAATCACAATTGATTCCTGTTGCATATATTAAGCAAGTGGG  100

seq1  CAACAGAAT-AAACTGAAGAGAACCATTCTT-AAAAATAAGCTCCCAGTT  146
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  CAACAGAATAAAACTGAAGAGAACCATTCTTAAAAAATAAGCTCCCAGTT  150

seq1  TTTGCAGGGACTGTTAGTGGCCAGAGAATGAAAGTTAGCACATTCTTTTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGGACTGTTAGTGGCCAGAGAATGAAAGTTAGCACATTCTTTTA  200

seq1  TTAGAATGTGATAGTTGACTGGAAGAGGATGCCAAGTAGGGTGCCAAGAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTGATAGTTGACTGGAAGAGGATGCCAAGTAGGGTGCCAAGAT  250

seq1  ATTTGTGAATAACTAAGGAAATTGGTGGGACTTGCCTTACTTAAATTTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAATAACTAAGGAAATTGGTGGGACTTGCCTTACTTAAATTTCA  300

seq1  TGATCTTCTCCAACTGTAAATGATGGAGATCTGTTCATTATAAATAATTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCTCCAACTGTAAATGATGGAGATCTGTTCATTATAAATAATTA  350

seq1  TTTTCTGGAGCTATAGCTGAAAAGGACAAAAGTGGTTTGTTTTTTTCATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGAGCTATAGCTGAAAAGGACAAAAGTGGTTTGTTTTTTTCATC  400

seq1  AGGACCAACCATGATGCTTATAAATATACTTAAAATGCTAGACGGATTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAACCATGATGCTTATAAATATACTTAAAATGCTAGACGGATTCC  450

seq1  TTGATTTCTTTTCAGTTTCACTAAGCCAAATTTGCACTACCTTGAGATAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTTTTCAGTTTCACTAAGCCAAATTTGCACTACCTTGAGATAC  500

seq1  AGATTATGACAACAGAGACAGGTAATTTTCACACACGTTTATATCCCAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGACAACAGAGACAGGTAATTTTCACACACGTTTATATCCCAAA  550

seq1  GCAAAACAAGGAATAATAAGGAGAAAACTTTTCAAGACAACCTTGGGAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACAAGGAATAATAAGGAGAAAACTTTTCAAGACAACCTTGGGAAG  600

seq1  TAAAGCAATATAATAAGAATGGTATGTTTGCAGGTGTGCTACAGAAAACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAATATAATAAGAATGGTATGTTTGCAGGTGTGCTACAGAAAACA  650

seq1  ACAACAAAAAATGTCGTTCGTGACCTGAGTTCTAGTCCCCCCCCAGCCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAAATGTCGTTCGTGACCTGAGTTCTAGTCCCCCCCCAGCCCA  700

seq1  TTGGCAGCACAGCCTGCAACATCAGCACCGAGGGTGGCAAAGACAAGGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGCACAGCCTGCAACATCAGCACCGAGGGTGGCAAAGACAAGGGG  750

seq1  ATTCCCCAGCCAGACTCAACTCCAGGTTCAGAAACATCGTCTCAGACACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCAGCCAGACTCAACTCCAGGTTCAGAAACATCGTCTCAGACACT  800

seq1  AAACGAGTGATTAGGGAAGCCAGCCAGTGTAGCCCTTTGGTCCTGCATCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGTGATTAGGGAAGCCAGCCAGTGTAGCCCTTTGGTCCTGCATCC  850

seq1  GTGTGTCCGCGTGTCCACACTTCCTAGAATTC  878
      ||||||||||||||||||||||||||||||||
seq2  GTGTGTCCGCGTGTCCACACTTCCTAGAATTC  882