BAC Information

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BAC

Clone NameB6Ng01-017C02
Chromosome17 (Build37)
Map Location 41,805,456 - 41,878,199
singlet/doubletdoublet
Overlap genenone
Upstream geneEG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017C02.bB6Ng01-017C02.g
ACCDH850898DH850899
length1,1211,122
definitionDH850898|Mus musculus domesticus DNA, BAC clone: B6Ng01-017C02, 5' end.DH850899|Mus musculus domesticus DNA, BAC clone: B6Ng01-017C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,805,456 - 41,806,321)(41,877,061 - 41,878,199)
sequence
gaattcattgctttttaaatagctgagtaatactctgttgtgcaaatgta
acatattttctgtatccattcctctgttgaaggacatatgggttcttcac
agcttctgtcttttgtaaataaggtttctatgaacatagtggtacatgtg
tccttattacatgttggatcatcttctgggtatattcccagaggtggtat
agctcaggtatatcctcaggtagtactatgtctaattttctgaggaaatg
ccaaactgatttccagagtggttgtgctagcttgcaatctcacaaacaat
ggaggagtgttcctctttctccacatccttagcagcatcggctctcacct
gagtttttgatcttacccattctgacaggtgtgaggtagaatctcagggt
tgctttgaattgcattttcctgatgactaaagatgttgaacatttcttta
ggtgcttctcagccattcagttttcctcagttgagaattcattgttcagt
tctgtaccccattttaatagggctcttgggttctctggagtctaactttt
tgagctttttgtatttattggatattacccctctattggatgtaaggttg
gtaaagatcttttcctaatctgttggttgccactttgttctattgatagt
gtcctttccttaaagaagttttgcaattttatgaggttccattgaacagt
tcttgatcttagaccataaactattggtgttctgttcaagaaattttttc
ctgtgcccatgtgctcatcaaacttcaaatttgactacttttaaccttaa
aatcaagtatttttttctttatttaactttacaagaattccttctttttc
aaaaaccaaacactgcctcatgtaatttattagtttgatgtggtaagcaa
tttccgtaagtctgtacattcgtgtattcttggaatgtggtccaagatag
aagttccatgagaggaattctaaatacttatgaataaatgccagaaaatt
aaacaacagtctgtaccttcagacttaaaaaacacaaattgttcttagat
ggactttgttcacttcgatgttgtaatgatagaaatgaattacttggatt
tttcataccactgactgttgt
gaattccattccagtaatttatacgtctgctgataagaattttgttgcta
tacaataaatcaagcctgcattgaaattaaattcaaatttgagaggttat
gaactatcctttatggttagctcattccttaaaaactcgtttgtggctca
aagcagaactagtgaatttcttggaggaatgtgagaaattgaagatagca
gaacatcaacttctttaatcagagttatattctacagactcagctttgta
tggtaagaataggcatagtagtaccttatttcctggttctccaatttcaa
aatgcctttgtaacattttactgttttgtaaaatgcgtttatttaatttt
atgtgtattactatttgcctgaatgtatgtttgtatactacatgtgtgcc
tggtgtctgtggagaccagaagaaggcatcagatccctggtaatggagtt
gttgatgtttgtgaagtcctatgtggatgcttcaaacttcctcttcaaaa
tcaaatttccttaactgttgtgccatttctccagcaccaagtgtttactt
atttatgggtgataagtgacttatggacagaaaatatccaaaactacata
tcaatcaacccactataaaacatagtcataacattttacaagcctgtatt
tgttacacgaattataatttctataatcctttgtattatttcatgttagt
attttactaaatagttccaccatacaagataatctgctattagagtatta
tgactctcactgcatagacaatctttccatccatttctcttgactgctga
gtactcctagctatcctgagcagcatcctgtttatgcccacacagctcta
ttttctgaccacctggctgaaaaccattaccagtcctgcaacaccaggga
cataaaagttagattcctatcctgctatccacattcactaccctctttgc
tttgtgtgcacattcagctgctaagcacttgtactgaccctgattccatt
gcttagccaagctgcctacagagactgctagaccagaatatcttgcttag
cctgctcttccagtactcttacacaggaacattcaagaccaagcatcaga
tgtataaagggccttgaagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_41805456_41806321
seq2: B6Ng01-017C02.b_316_1169

seq1  GTGGTTGTGCTAGCTTGCAATCTCACAAACAATGGAGGAGTGTTCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTGCTAGCTTGCAATCTCACAAACAATGGAGGAGTGTTCCTCTT  50

seq1  TCTCCACATCCTTAGCAGCATCGGCTCTCACCTGAGTTTTTGATCTTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACATCCTTAGCAGCATCGGCTCTCACCTGAGTTTTTGATCTTACC  100

seq1  CATTCTGACAGGTGTGAGGTAGAATCTCAGGGTTGCTTTGAATTGCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGACAGGTGTGAGGTAGAATCTCAGGGTTGCTTTGAATTGCATTT  150

seq1  TCCTGATGACTAAAGATGTTGAACATTTCTTTAGGTGCTTCTCAGCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGACTAAAGATGTTGAACATTTCTTTAGGTGCTTCTCAGCCATT  200

seq1  CAGTTTTCCTCAGTTGAGAATTCATTGTTCAGTTCTGTACCCCATTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCCTCAGTTGAGAATTCATTGTTCAGTTCTGTACCCCATTTTAA  250

seq1  TAGGGCTCTTGGGTTCTCTGGAGTCTAACTTTTTGAGCTTTTTGTATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTCTTGGGTTCTCTGGAGTCTAACTTTTTGAGCTTTTTGTATTTA  300

seq1  TTGGATATTACCCCTCTATTGGATGTAAGGTTGGTAAAGATCTTTTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATATTACCCCTCTATTGGATGTAAGGTTGGTAAAGATCTTTTCCTA  350

seq1  ATCTGTTGGTTGCCACTTTGTTCTATTGATAGTGTCCTTTCCTTAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTGGTTGCCACTTTGTTCTATTGATAGTGTCCTTTCCTTAAAGAA  400

seq1  GTTTTGCAATTTTATGAGGTTCCATTGAACAGTTCTTGATCTTAGACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCAATTTTATGAGGTTCCATTGAACAGTTCTTGATCTTAGACCAT  450

seq1  AAACTATTGGTGTTCTGTTCAAGAAATTTTTTCCTGTGCCCATGTGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTGGTGTTCTGTTCAAGAAATTTTTTCCTGTGCCCATGTGCTCA  500

seq1  TCAAACTTCAAATTTGACTACTTTTAACCTTAAAATCAAGTATTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTTCAAATTTGACTACTTTTAACCTTAAAATCAAGTATTTTTTTC  550

seq1  TTTATTTAACTTTACAAGAATTCCTTCTTTTTCAAAAACCAAACACTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAACTTTACAAGAATTCCTTCTTTTTCAAAAACCAAACACTGCC  600

seq1  TCATGTAATTTATTAGTTTGATGTGGTAAGCAATTTCCGTAAGTCTGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAATTTATTAGTTTGATGTGGTAAGCAATTTCCGTAAGTCTGTAC  650

seq1  ATTCGTGTATTCTTGGAATGTGGTCCAAGATAGAAGTTCCATGAGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGTATTCTTGGAATGTGGTCCAAGATAGAAGTTCCATGAGAGGAA  700

seq1  TTCTAAATACTTATGAATAAATGCCAAGAAAATTAAACAACAGTCTTGTA  750
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  TTCTAAATACTTATGAATAAATGCC-AGAAAATTAAACAACAGTC-TGTA  748

seq1  ACCTCAGGACTTAAAAAAACACAAAATTGTTCTTAGAATGTGACTTTGTT  800
       | ||| ||||| ||||||||| ||||||||||||| ||| |||||||||
seq2  CCTTCA-GACTT-AAAAAACAC-AAATTGTTCTTAG-ATG-GACTTTGTT  793

seq1  CCCCCTCCGATG-TGTAATGGATAAGAATGAATTTACCTTGGGTTTTTCA  849
        | || ||||| |||||| ||||  ||||||||   ||||| |||||||
seq2  --CACTTCGATGTTGTAAT-GATAGAAATGAATT--ACTTGGATTTTTCA  838

seq1  TTACAACTGACTGTTGT  866
       ||| ||||||||||||
seq2  -TACCACTGACTGTTGT  854

seq1: chr17_41877061_41878199
seq2: B6Ng01-017C02.g_66_1187 (reverse)

seq1  GTTCTTTCAAGGCCCTTTTATCCATCTTGATTGCTTTGGTCTCTGAATGT  50
      |||| |||||||||| ||||| |||| ||| ||| ||||||| |||||||
seq2  GTTC-TTCAAGGCCC-TTTATACATC-TGA-TGC-TTGGTCT-TGAATGT  44

seq1  TCCTGTTGTAGAGGTACTGGAAAGGCAGGCCTAAGCAAGATATTCCTGGT  100
      ||||| ||||   |||||||||  ||||| |||||||||||||| |||||
seq2  TCCTG-TGTAAGAGTACTGGAAGAGCAGG-CTAAGCAAGATATT-CTGGT  91

seq1  CTAGCAGTCCTCTTGTAGGCAGCCTTGGGCTAAGCAATGGAATTCAGGGG  150
      |||||||| ||| ||||||||||  | ||||||||||||||| ||| |||
seq2  CTAGCAGT-CTC-TGTAGGCAGC--TTGGCTAAGCAATGGAA-TCA-GGG  135

seq1  TCAGTACAAGTTGCTTAGCAGCTGAATGTGCCACACAAAGCAAAGAGGGT  200
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  TCAGTACAAG-TGCTTAGCAGCTGAATGTG-CACACAAAGCAAAGAGGGT  183

seq1  AGTGAATTGTGGATAGCAGGATAGGAATCTAACTTTTATGTCCCTGGTGT  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAA-TGTGGATAGCAGGATAGGAATCTAACTTTTATGTCCCTGGTGT  232

seq1  TGCAGGACTGGTAATGGTTTTCAGCCAGGTGGTCAGAAAATAGAGCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGACTGGTAATGGTTTTCAGCCAGGTGGTCAGAAAATAGAGCTGTG  282

seq1  TGGGCATAAACAGGATGCTGCTCAGGATAGCTAGGAGTACTCAGCAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAAACAGGATGCTGCTCAGGATAGCTAGGAGTACTCAGCAGTCA  332

seq1  AGAG-AATGGATGGAAAGATTGTCTATGCAGTGAGAGTCATAATACTCTA  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATGGATGGAAAGATTGTCTATGCAGTGAGAGTCATAATACTCTA  382

seq1  ATAGCAGATTATCTTGTATGGTGGAACTATTTAGTAAAATACTAACATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGATTATCTTGTATGGTGGAACTATTTAGTAAAATACTAACATGA  432

seq1  AATAATACAAAGGATTATAGAAATTATAATTCGTGTAACAAATACAGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACAAAGGATTATAGAAATTATAATTCGTGTAACAAATACAGGCT  482

seq1  TGTAAAATGTTATGACTATGTTTTATAGTGGGTTGATTGATATGTAGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGTTATGACTATGTTTTATAGTGGGTTGATTGATATGTAGTTT  532

seq1  TGGATATTTTCTGTCCATAAGTCACTTATCACCCATAAATAAGTAAACAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTTTCTGTCCATAAGTCACTTATCACCCATAAATAAGTAAACAC  582

seq1  TTGGTGCTGGAGAAATGGCACAACAGTTAAGGAAATTTGATTTTGAAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTGGAGAAATGGCACAACAGTTAAGGAAATTTGATTTTGAAGAG  632

seq1  GAAGTTTGAAGCATCCACATAGGACTTCACAAACATCAACAACTCCATTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGAAGCATCCACATAGGACTTCACAAACATCAACAACTCCATTA  682

seq1  CCAGGGATCTGATGCCTTCTTCTGGTCTCCACAGACACCAGGCACACATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATCTGATGCCTTCTTCTGGTCTCCACAGACACCAGGCACACATG  732

seq1  TAGTATACAAACATACATTCAGGCAAATAGTAATACACATAAAATTAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATACAAACATACATTCAGGCAAATAGTAATACACATAAAATTAAAT  782

seq1  AAACGCATTTTACAAAACAGTAAAATGTTACAAAGGCATTTTGAAATTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCATTTTACAAAACAGTAAAATGTTACAAAGGCATTTTGAAATTGG  832

seq1  AGAACCAGGAAATAAGGTACTACTATGCCTATTCTTACCATACAAAGCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAGGAAATAAGGTACTACTATGCCTATTCTTACCATACAAAGCTG  882

seq1  AGTCTGTAGAATATAACTCTGATTAAAGAAGTTGATGTTCTGCTATCTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTAGAATATAACTCTGATTAAAGAAGTTGATGTTCTGCTATCTTC  932

seq1  AATTTCTCACATTCCTCCAAGAAATTCACTAGTTCTGCTTTGAGCCACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCACATTCCTCCAAGAAATTCACTAGTTCTGCTTTGAGCCACAA  982

seq1  ACGAGTTTTTAAGGAATGAGCTAACCATAAAGGATAGTTCATAACCTCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTTTTTAAGGAATGAGCTAACCATAAAGGATAGTTCATAACCTCTC  1032

seq1  AAATTTGAATTTAATTTCAATGCAGGCTTGATTTATTGTATAGCAACAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAATTTAATTTCAATGCAGGCTTGATTTATTGTATAGCAACAAA  1082

seq1  ATTCTTATCAGCAGACGTATAAATTACTGGAATGGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATCAGCAGACGTATAAATTACTGGAATGGAATTC  1122