BAC Information

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BAC

Clone NameB6Ng01-017N05
Chromosome17 (Build37)17 (Build37)
Map Location 53,117,576 - 53,118,60152,971,314 - 52,971,992
singlet/doubletsingletsinglet
Overlap geneKcnh8
Upstream geneLOC672987, EG328839
Downstream geneLOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017N05.bB6Ng01-017N05.g
ACCDH851390DH851391
length1,019679
definitionDH851390|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N05, 5' end.DH851391|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,117,576 - 53,118,601)(52,971,314 - 52,971,992)
sequence
gaattcattttcctacaagcttaactgtagacaggacctaaacttctgct
attattaaatacctagcctgtcactggcctctattcaaggtaactagaat
gctatataaatgggaaatctgtcttatggtctcagatgtttgaacacctg
gtccctagttcatagcactatttgagaaggtagcatagccttgctggagg
aagtacgtcagtgaggtgagctttgagagttcacagtccttccctggttc
cagtttgctctttctgattattgttgatggtgagatcagtaagcctcaag
cactggccaccatgcctgcctgttctcatgcctccctgtcacaatggagt
ctcatctctctggaactttaagcccaaataaactgcttccttctataagt
tgtctccatcatgggtctttatcacagcaacaggaaagtaactaatacaa
ctaggtgctttgttttgggcatctatgtggggtatgtgcttcgctctgct
gccagcctcttatacactgccacgtagttctattacagatctcttccttc
acagtggtactttgtttcacttactcatgagattgcattgaggtttgata
gtcatagctaaaggaatctctaatttgcttcttggtactctgctataatt
cagactcagaaatgattaatcatttgtctcaaaggaaggacaaagtcttg
tgtgaagttaaagtcttgtgtgaagtgcatagttacatgtgtcattgaag
tcctactctttactttctaactataaccatggaaagcacataatttttaa
gagttatggcttcttcaacttcaaattaagaataggaagaagagatatta
gacaactgcatattagattatggaacttaggtattaaatattagatatct
aaggtaagcattaagaatatttaactgttgtggactctcaccaggaattt
tgatcaaaatagaccttttctcctcaattgtttttatgttttttgttttt
tttttttgacgagaatttt
gaattcaattatgttttctttttggtgtagtggattaggatcggcccttt
ataaaggctgtaaaccagggtgtttacataattctctgtctcttagctaa
tggcattaaatgtcattaaatagaatccttgttccatggaccacaaagga
tgatgtgtcatacgtcaacacataggaatataaagattttgaggaggaaa
aatcttttctgttaatttgctatgggtttgggagtttttcttggctcaaa
caatatggttttgctacttttacattgccatgaatggcattccagaagga
cgacttaaaatgtttacttctgggctcatgggtttggaagttttagttca
tcatagttgtgaaaccaaggcagagcaaatccgttcacatcatggtggaa
gggattcagagtgagtcacatctgcaaccgtaccaccctcagggtgccaa
tcactgatggcagaagcttagcaacatcaggcctgtttagtgttttgatg
gaggagaatgcaaggttcagaagaaactctgctcctaatgacctatttct
tctagctctgctctgctccttacatttccagaatatctcccaaacattac
cactgtctgaggaccaagctttcaaaccatgagatgtcataagtaaacta
taatgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_53117576_53118601
seq2: B6Ng01-017N05.b_48_1066

seq1  GAATTCATTTTCCTACAAGCTTAACTGTAGACAGGACCTAAACTTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCCTACAAGCTTAACTGTAGACAGGACCTAAACTTCTGCT  50

seq1  ATTATTAAATACCTAGCCTGTCACTGGCCTCTATTCAAGGTAACTAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAATACCTAGCCTGTCACTGGCCTCTATTCAAGGTAACTAGAAT  100

seq1  GCTATATAAATGGGAAATCTGTCTTATGGTCTCAGATGTTTGAACACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATAAATGGGAAATCTGTCTTATGGTCTCAGATGTTTGAACACCTG  150

seq1  GTCCCTAGTTCATAGCACTATTTGAGAAGGTAGCATAGCCTTGCTGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAGTTCATAGCACTATTTGAGAAGGTAGCATAGCCTTGCTGGAGG  200

seq1  AAGTACGTCAGTGAGGTGAGCTTTGAGAGTTCACAGTCCTTCCCTGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACGTCAGTGAGGTGAGCTTTGAGAGTTCACAGTCCTTCCCTGGTTC  250

seq1  CAGTTTGCTCTTTCTGATTATTGTTGATGGTGAGATCAGTAAGCCTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCTCTTTCTGATTATTGTTGATGGTGAGATCAGTAAGCCTCAAG  300

seq1  CACTGGCCACCATGCCTGCCTGTTCTCATGCCTCCCTGTCACAATGGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCACCATGCCTGCCTGTTCTCATGCCTCCCTGTCACAATGGAGT  350

seq1  CTCATCTCTCTGGAACTTTAAGCCCAAATAAACTGCTTCCTTCTATAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCTCTGGAACTTTAAGCCCAAATAAACTGCTTCCTTCTATAAGT  400

seq1  TGTCTCCATCATGGGTCTTTATCACAGCAACAGGAAAGTAACTAATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCATCATGGGTCTTTATCACAGCAACAGGAAAGTAACTAATACAA  450

seq1  CTAGGTGCTTTGTTTTGGGCATCTATGTGGGGTATGTGCTTCGCTCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGCTTTGTTTTGGGCATCTATGTGGGGTATGTGCTTCGCTCTGCT  500

seq1  GCCAGCCTCTTATACACTGCCACGTAGTTCTATTACAGATCTCTTCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTCTTATACACTGCCACGTAGTTCTATTACAGATCTCTTCCTTC  550

seq1  ACAGTGGTACTTTGTTTCACTTACTCATGAGATTGCATTGAGGTTTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGTACTTTGTTTCACTTACTCATGAGATTGCATTGAGGTTTGATA  600

seq1  GTCATAGCTAAAGGAATCTCTAATTTGCTTCTTGGTACTCTGCTATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGCTAAAGGAATCTCTAATTTGCTTCTTGGTACTCTGCTATAATT  650

seq1  CAGACTCAGAAATGATTAATCATTTGTCTCAAAGGAAGGACAAAGTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGAAATGATTAATCATTTGTCTCAAAGGAAGGACAAAGTCTTG  700

seq1  TGTGAAGTTAAAGTCTTGTGTGAAGTGCATAGTTACATGTGTCATTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTTAAAGTCTTGTGTGAAGTGCATAGTTACATGTGTCATTGAAG  750

seq1  TCCTACTCTTTACTTTCTAACTATAACCATGGAAAGCACATAATTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTCTTTACTTTCTAACTATAACCATGGAAAGCACATAATTTTTAA  800

seq1  GAGTTATGGCTTCTTCAACTTCAAATTAAGAATAGGAAGAAGAGAATATT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGTTATGGCTTCTTCAACTTCAAATTAAGAATAGGAAGAAGAG-ATATT  849

seq1  AGAC-ACTGCATATTAGATTATGGAACTTAGGTATTAAATATTAGATATC  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTGCATATTAGATTATGGAACTTAGGTATTAAATATTAGATATC  899

seq1  TAAGTTAAGCACTTAAGAATATTTTAACTGTTGTGGACTCTCACCAGGAA  949
      |||| |||||| ||||||||| ||||||||||||||||||||||||||||
seq2  TAAGGTAAGCA-TTAAGAATA-TTTAACTGTTGTGGACTCTCACCAGGAA  947

seq1  TTTTGATCTAAAATAGACCTTTTCTCCCTCAAGTTGTTTTTTTGTTTTTT  999
      |||||||| |||||||||||||||| |||||| |||||||| || |||||
seq2  TTTTGATC-AAAATAGACCTTTTCT-CCTCAA-TTGTTTTTATG-TTTTT  993

seq1  TGTTTTTTTTTTTTGACAGAGAATTTT  1026
      ||||||||||||||||| |||||||||
seq2  TGTTTTTTTTTTTTGAC-GAGAATTTT  1019

seq1: chr17_52971314_52971992
seq2: B6Ng01-017N05.g_69_747

seq1  GAATTCAATTATGTTTTCTTTTTGGTGTAGTGGATTAGGATCGGCCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATGTTTTCTTTTTGGTGTAGTGGATTAGGATCGGCCCTTT  50

seq1  ATAAAGGCTGTAAACCAGGGTGTTTACATAATTCTCTGTCTCTTAGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGCTGTAAACCAGGGTGTTTACATAATTCTCTGTCTCTTAGCTAA  100

seq1  TGGCATTAAATGTCATTAAATAGAATCCTTGTTCCATGGACCACAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAAATGTCATTAAATAGAATCCTTGTTCCATGGACCACAAAGGA  150

seq1  TGATGTGTCATACGTCAACACATAGGAATATAAAGATTTTGAGGAGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTCATACGTCAACACATAGGAATATAAAGATTTTGAGGAGGAAA  200

seq1  AATCTTTTCTGTTAATTTGCTATGGGTTTGGGAGTTTTTCTTGGCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTCTGTTAATTTGCTATGGGTTTGGGAGTTTTTCTTGGCTCAAA  250

seq1  CAATATGGTTTTGCTACTTTTACATTGCCATGAATGGCATTCCAGAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGGTTTTGCTACTTTTACATTGCCATGAATGGCATTCCAGAAGGA  300

seq1  CGACTTAAAATGTTTACTTCTGGGCTCATGGGTTTGGAAGTTTTAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTAAAATGTTTACTTCTGGGCTCATGGGTTTGGAAGTTTTAGTTCA  350

seq1  TCATAGTTGTGAAACCAAGGCAGAGCAAATCCGTTCACATCATGGTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTGTGAAACCAAGGCAGAGCAAATCCGTTCACATCATGGTGGAA  400

seq1  GGGATTCAGAGTGAGTCACATCTGCAACCGTACCACCCTCAGGGTGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCAGAGTGAGTCACATCTGCAACCGTACCACCCTCAGGGTGCCAA  450

seq1  TCACTGATGGCAGAAGCTTAGCAACATCAGGCCTGTTTAGTGTTTTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATGGCAGAAGCTTAGCAACATCAGGCCTGTTTAGTGTTTTGATG  500

seq1  GAGGAGAATGCAAGGTTCAGAAGAAACTCTGCTCCTAATGACCTATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAATGCAAGGTTCAGAAGAAACTCTGCTCCTAATGACCTATTTCT  550

seq1  TCTAGCTCTGCTCTGCTCCTTACATTTCCAGAATATCTCCCAAACATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTCTGCTCTGCTCCTTACATTTCCAGAATATCTCCCAAACATTAC  600

seq1  CACTGTCTGAGGACCAAGCTTTCAAACCATGAGATGTCATAAGTAAACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTGAGGACCAAGCTTTCAAACCATGAGATGTCATAAGTAAACTA  650

seq1  TAATGTGTGTGTGTGTGTGTGTGTGTGTG  679
      |||||||||||||||||||||||||||||
seq2  TAATGTGTGTGTGTGTGTGTGTGTGTGTG  679