BAC Information

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BAC

Clone NameB6Ng01-019A06
Chromosome17 (Build37)
Map Location 52,911,998 - 52,912,454
singlet/doubletsinglet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019A06.bB6Ng01-019A06.g
ACCDH852233DH852234
length1,223374
definitionDH852233|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A06, 5' end.DH852234|Mus musculus domesticus DNA, BAC clone: B6Ng01-019A06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaaaaaatttaaatggccaagaagcacttatagaaatg
ttcaacatccttagtcatcagggaaatgcaaaatcaaacaaccctgagat
tcctcctcataccagtcaaaatggctaagatcaaaaactcaagtgaccgc
agatagtgttgaggatgtcaagaaaggggaacactcctccattgctggtg
ggattgcaagctggtacaaccactctggaaatcagtctggtggttccttg
ttgggagctattaagacaactctattgtcttgatctccgaattggggctc
ttcccccaagaggaaaagggggtcaaaagcgggccacctacgcaccttta
tgaaaacaaccacagaatgttccagccctaagtcagcgccagatgtcctg
atcacaccctgataccaccaagttcctgcctccccgtgtagctgccaaaa
gaaaattttctgctgccccattcctcctgctgagaagtactcctcttttg
cttgtgcatttctgctgccccatctctcctgctgagaagtactttctcct
ttgcttccactgccccattcctcctgctgagaagtacttcccgttttgct
tgtgcatttaagccttgagccttgctgaatatagtgacaccttgatgcta
ctcagactgtttatgtgtcgctttcgcacttggtgtccgtccctccatcc
ccccatttggttcttaggagaaggtcctctcgagacccttgaataactgg
acctgctggatgggtcaagtggcgccagatgtggggcacgaggtacgacc
actctccggacaatggattcaagaggtactgcgtagacaatgagacggtt
ccctgccacttcgctcgagtgttgcagacatcgagaggtaagcctggcat
aaagttgttgtcccatttaccatggggaaggttctgtccaaagagacagt
tttattcagagatgaagggtctcttaagagagaggattagagttagaaaa
aggatttataatttttttttgtttgtggatgagaaaatgtcatggctgga
ttggatggtctgaaatacaccctttaccttgaaaagtaagcaagaattca
atgcttgtaataaacaagaaaaggtcctgagccttgggattctcgagatc
ttaacaggaaaaagaacgaatgtcctgccttgcttactaaatttttaaat
cctgatcgcttgctaaggtagca
ttatggcaatgtgcaaatgtattcttcctgtgaatctatttttaaaacca
atactgatatatatatacatatacatatatatgtatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatataggggggggatatatatatagggatatatg
ggggggggggcgggcgggcgcgcgcgcgcccatacatacacacacatata
cacccatacacatatagatatacatatatatatagatatatatatatata
tatatatatatatacatatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52911998_52912454
seq2: B6Ng01-019A06.g_146_445 (reverse)

seq1  TATATATATGTATATATATCACCAGACACACACACACACAATATATATAT  50
                                               |||||||||
seq2  -----------------------------------------TATATATAT  9

seq1  ATATATATATATATATATATATATATATATATATATATATATGCATAATA  100
       ||||||||||||||||||||||||||||| ||||||||||||       
seq2  GTATATATATATATATATATATATATATATCTATATATATATG-------  52

seq1  CATATATAGTGTGATATACACACACATATATATAGTGTGTGTGTGTGTTT  150
                                ||||| || | ||||| || || |
seq2  --------------------------TATATCTA-TATGTGTATGGGTGT  75

seq1  ATATGTGTGTGTGTGTGTTGTGTTCTAACCGGTTCTCAGAAAGTCACAGA  200
      |||||||||||| |||                                  
seq2  ATATGTGTGTGTATGT----------------------------------  91

seq1  AGGTGCATCTCAGGTTCATAGCTGACTAGATATTCACCTTCCATCTGTGT  250
      | | ||  | |  |  |    | | |        | ||  |||| | |  
seq2  ATGGGC-GCGCGCGCGCCCGCCCGCC-------CCCCCCCCCATATAT--  131

seq1  AAAATTGCAGGCATTATTTGTCTGGCTCCAAAGAAACCTCTAGCTGTGTG  300
                 |  ||| | | |  | ||       || |||        
seq2  -----------CCCTATATATATATCCCC-------CCCCTA--------  155

seq1  CAGAGGTAAATATATATATTTATATATACATATATATTTATACATGTATA  350
            || |||||||||| |||||||| |||||||| |||| || ||||
seq2  ------TATATATATATATATATATATATATATATATATATATATATATA  199

seq1  TACATATATACATACATATATTTATATATATATATATAGAGACACACACA  400
      || ||||||| ||| |||||| |||||||||||||||      | | | |
seq2  TATATATATATATATATATATATATATATATATATAT------ATATATA  243

seq1  CACACACACATATATATATATATATATATATATATATATATATATATACA  450
       | | | | |||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATATACA  293

seq1  TATATAT  457
      |||||||
seq2  TATATAT  300