BAC Information

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BAC

Clone NameB6Ng01-019E24
Chromosome17 (Build37)
Map Location 46,208,874 - 46,366,522
singlet/doubletdoublet
Overlap geneMrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5
Upstream geneSupt3h, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa
Downstream geneRpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019E24.bB6Ng01-019E24.g
ACCDH852444DH852445
length1,0501,074
definitionDH852444|Mus musculus domesticus DNA, BAC clone: B6Ng01-019E24, 5' end.DH852445|Mus musculus domesticus DNA, BAC clone: B6Ng01-019E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,208,874 - 46,209,922)(46,365,439 - 46,366,522)
sequence
gaattcttccccgtctcccctggctgaaggcctggcactggttcccagag
cctacgtacactgtgactgagccaggtcttgtggagcagataatgaacaa
tcccaaaccaagccctggggacatctccacccaatggatcattccttttt
ttttttcttaatactcttttcatcttgatttattgtatatatgtgtgcac
atgtatgaaagcattcgtgtcacagcacatggatggagatcagaggttaa
tttgcaggaatcagttctctcctctactgtgtgggttccaggaactgaac
ccaggtcgtcaggctgggtggcaagcccccttcacccactgagccatctc
agtggctcccgaaaggcgcctcctttccagaaacatttctctaaagcctc
taaagcatcagtgggggcttgggggatgtgaataagatgaagtccctacc
catgacatctacacggcatcatcccatccatccagcagtgttctgagcca
tctgggagacagatgtggagcacatgaggacataagtagatctctgtttt
tatgacccagaccctcaggctcatatttgaggatgctaagatagatgtgg
ctagactacgtctgccatttacatttgagctcagtacctaccctctctgg
gcttctgtttgctctgacagctttcttgtctgcctggctgtgtgtatgtg
agggttgacacaccgagagtgccatctcaggtgttctggttgttctacgt
cagcacctagacaggtcgtcaacacacagacagtgcagaatagagtggtg
gagacccaagtcatcctgggagcacggagaggagcgtcacagtgccaggt
gccactcagccagagaaaaaagaggggttggacacagattccctccccac
tttatctagctctgctctctggtacccactgggccgcccacaaggaaagt
atctcctctaaggatagcataggtgggtaaggtaaaaccaaaaaccacac
aacagaaccagacatgggtctgaggatgggagctcagtggggttgagctc

gaattcaagactaaagaagaaaagaaaggagaagcttagggcaggagaga
ctcttgggtctctcagcagtacagacaaaacaaatctgagaaacttgatc
aatgaaacaccctaactcctgcccgtggccagtgaaacttcccattccca
ggagagtcttactcgtgcacggttcaagccacatggatcctccacagctg
ggtcacagcttttcagatcagcacccacataggcaatgaaggagtcaata
tctgacagcgctctgaagggaggggaggaagaaaagttctatcatgatct
ttgtttagacagagatttactttcttttcagctaagtgtatgtgcatgtc
tgtgtggggtatgtatatgagtacaggtgacctcagaggccaaaagagac
catgggtcccctggagcttgttacaagcggctgtgagcaagtcagcctgg
tgttgggcactaactctggttgtctgaaaaagcagtaagctttattaacc
actaagccatccctccaagcccctaccgtcatgattaaaaaaaaagaaaa
tggggggaatgtgtgcttgcatctatgtatgtctgtacaccacacagcgc
acagttcttagttcctcagggaccaaaagagggctctggattccttgggg
ctggagttacaaatggtagtgagctacaatgtaggtgcttggaactagat
gaacctgggcctctacaagagcagtaaatgctcttttatcagcagagaca
tctctccagccctccaaattttgtttgctcctacgaggcagggtttggtt
gactgggaactcagagactggtgtatgcctctgatggcaaaggatggtgc
cactgtagcttctttgaatcatgcctttaagactgacagtctccacaaga
gctaacagcagaccaaggaagcattattatcccagagaagaaggcaagga
ggagtagatttcaaggtcaccctttgctacaggttacctagaagcaattg
ggtacagtagaatcaagttcaagaaactgttaaaaaaagtatttgactcc
aaccagtagcgtttttctttgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46208874_46209922
seq2: B6Ng01-019E24.b_42_1091

seq1  GAATTCTTCCCCGTCTCCCCTGGCTGAAGGCCTGGCACTGGTTCCCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCGTCTCCCCTGGCTGAAGGCCTGGCACTGGTTCCCAGAG  50

seq1  CCTACGTACACTGTGACTGAGCCAGGTCTTGTGGAGCAGATAATGAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGTACACTGTGACTGAGCCAGGTCTTGTGGAGCAGATAATGAACAA  100

seq1  TCCCAAACCAAGCCCTGGGGACATCTCCACCCAATGGATCATTCCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACCAAGCCCTGGGGACATCTCCACCCAATGGATCATTCCTTTTT  150

seq1  TTTTTTCTTAATACTCTTTTCATCTTGATTTATTGTATATATGTGTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTAATACTCTTTTCATCTTGATTTATTGTATATATGTGTGCAC  200

seq1  ATGTATGAAAGCATTCGTGTCACAGCACATGGATGGAGATCAGAGGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAAAGCATTCGTGTCACAGCACATGGATGGAGATCAGAGGTTAA  250

seq1  TTTGCAGGAATCAGTTCTCTCCTCTACTGTGTGGGTTCCAGGAACTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGAATCAGTTCTCTCCTCTACTGTGTGGGTTCCAGGAACTGAAC  300

seq1  CCAGGTCGTCAGGCTGGGTGGCAAGCCCCCTTCACCCACTGAGCCATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCGTCAGGCTGGGTGGCAAGCCCCCTTCACCCACTGAGCCATCTC  350

seq1  AGTGGCTCCCGAAAGGCGCCTCCTTTCCAGAAACATTTCTCTAAAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTCCCGAAAGGCGCCTCCTTTCCAGAAACATTTCTCTAAAGCCTC  400

seq1  TAAAGCATCAGTGGGGGCTTGGGGGATGTGAATAAGATGAAGTCCCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCATCAGTGGGGGCTTGGGGGATGTGAATAAGATGAAGTCCCTACC  450

seq1  CATGACATCTACACGGCATCATCCCATCCATCCAGCAGTGTTCTGAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATCTACACGGCATCATCCCATCCATCCAGCAGTGTTCTGAGCCA  500

seq1  TCTGGGAGACAGATGTGGAGCACATGAGGACATAAGTAGATCTCTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGACAGATGTGGAGCACATGAGGACATAAGTAGATCTCTGTTTT  550

seq1  TATGACCCAGACCCTCAGGCTCATATTTGAGGATGCTAAGATAGATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCCAGACCCTCAGGCTCATATTTGAGGATGCTAAGATAGATGTGG  600

seq1  CTAGACTACGTCTGCCATTTACATTTGAGCTCAGTACCTACCCTCTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTACGTCTGCCATTTACATTTGAGCTCAGTACCTACCCTCTCTGG  650

seq1  GCTTCTGTTTGCTCTGACAGCTTTCTTGTCTGCCTGGCTGTGTGTATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTTGCTCTGACAGCTTTCTTGTCTGCCTGGCTGTGTGTATGTG  700

seq1  AGGGTTGACACACCGAGAGTGCCATCTCAGGTGTTCTGGTTGTTCTACGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGACACACCGAGAGTGCCATCTCAGGTGTTCTGGTTGTTCTACGT  750

seq1  CAGCACCTAGACAGGTCGTCAACACACAGACAGTGCAGAATAGAGTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTAGACAGGTCGTCAACACACAGACAGTGCAGAATAGAGTGGTG  800

seq1  GAGACCCAAGTCATCCTGGGAGCACGGAGAGGAGCGTCACAGTGCCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCAAGTCATCCTGGGAGCACGGAGAGGAGCGTCACAGTGCCAGGT  850

seq1  GCCACTCAGCCAGAGAAAAAAGAGGGGTTGGACACAGATTCCCTCCCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCAGCCAGAGAAAAAAGAGGGGTTGGACACAGATTCCCTCCCCAC  900

seq1  TTTATCTAGCCCTGCTTCTCTGGTACCCACT-GGCCGCCCACAAGGAAAG  949
      |||||||||| |||| ||||||||||||||| ||||||||||||||||||
seq2  TTTATCTAGCTCTGC-TCTCTGGTACCCACTGGGCCGCCCACAAGGAAAG  949

seq1  TATCT-CTCTAAGGGATAGCATAGGTGGGTAAAGGTAAAAACAAAAACAA  998
      ||||| |||||| ||||||||||||||||| ||||||||| ||||||| |
seq2  TATCTCCTCTAA-GGATAGCATAGGTGGGT-AAGGTAAAACCAAAAACCA  997

seq1  ACAAACAGAACCAGACCATGGTCTGAGGAT-GGAGCTCAGT-GGGTTGAG  1046
         |||||||||||||   ||||||||||| |||||||||| ||||||||
seq2  CACAACAGAACCAGACATGGGTCTGAGGATGGGAGCTCAGTGGGGTTGAG  1047

seq1  CTC  1049
      |||
seq2  CTC  1050

seq1: chr17_46365439_46366522
seq2: B6Ng01-019E24.g_69_1142 (reverse)

seq1  CAACAAAAGCAAAAATGCTACTGTTTGGGGTCAAATACTCTTTTTAATAT  50
      |||||||   ||||| ||||||| |||| |||||||||| ||||||  | 
seq2  CAACAAA--GAAAAACGCTACTGGTTGGAGTCAAATACTTTTTTTA--AC  46

seq1  AGTTTCTTGAGACTTGA-TCTACTGTAACCCAATTGGCCTCTAGGTAACC  99
      |||||||||| |||||| |||||||| |||||||| || ||||||||| |
seq2  AGTTTCTTGA-ACTTGATTCTACTGT-ACCCAATT-GCTTCTAGGTAA-C  92

seq1  CTGTAGCCAAGGGTGACCTTGAACTCCTACTCCTCCTTGCCCTCTTCCTC  149
      ||||||| ||||||||||||||| | ||||||||||||||| |||| |||
seq2  CTGTAGCAAAGGGTGACCTTGAAAT-CTACTCCTCCTTGCCTTCTT-CTC  140

seq1  TGTGATAATAATGCTTCCTTGGTCTGCTGTTAGCTCTTGTGGAGACTGTC  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAATAATGCTTCCTTGGTCTGCTGTTAGCTCTTGTGGAGACTGTC  190

seq1  AGTCCTTAAGGGCATGATTCAAAGAAGCTACAGTGGCACCATCCTTTGCC  249
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGT-CTTAAAGGCATGATTCAAAGAAGCTACAGTGGCACCATCCTTTGCC  239

seq1  ATCAGAGGCATACACCAGTCTCTGAGTTCCCAGTCAACCAAACCCTGCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGCATACACCAGTCTCTGAGTTCCCAGTCAACCAAACCCTGCCT  289

seq1  CGTAGGAGCAAACAAAATTTGGAGGGCTGGAGAGATGTCTCTGCTGATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGAGCAAACAAAATTTGGAGGGCTGGAGAGATGTCTCTGCTGATAA  339

seq1  AAGAGCATTTACTGCTCTTGTAGAGGCCCAGGTTCATCTAGTTCCAAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATTTACTGCTCTTGTAGAGGCCCAGGTTCATCTAGTTCCAAGCA  389

seq1  CCTACATTGTAGCTCACTACCATTTGTAACTCCAGCCCCAAGGAATCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATTGTAGCTCACTACCATTTGTAACTCCAGCCCCAAGGAATCCAG  439

seq1  AGCCCTCTTTTGGTCCCTGAGGAACTAAGAACTGTGCGCTGTGTGGTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTTTTGGTCCCTGAGGAACTAAGAACTGTGCGCTGTGTGGTGTA  489

seq1  CAGACATACATAGATGCAAGCACACATTCCCCCCATTTTCTTTTTTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATACATAGATGCAAGCACACATTCCCCCCATTTTCTTTTTTTTTA  539

seq1  ATCATGACGGTAGGGGCTTGGAGGGATGGCTTAGTGGTTAATAAAGCTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACGGTAGGGGCTTGGAGGGATGGCTTAGTGGTTAATAAAGCTTA  589

seq1  CTGCTTTTTCAGACAACCAGAGTTAGTGCCCAACACCAGGCTGACTTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTCAGACAACCAGAGTTAGTGCCCAACACCAGGCTGACTTGCT  639

seq1  CACAGCCGCTTGTAACAAGCTCCAGGGGACCCATGGTCTCTTTTGGCCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCGCTTGTAACAAGCTCCAGGGGACCCATGGTCTCTTTTGGCCTC  689

seq1  TGAGGTCACCTGTACTCATATACATACCCCACACAGACATGCACATACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCACCTGTACTCATATACATACCCCACACAGACATGCACATACAC  739

seq1  TTAGCTGAAAAGAAAGTAAATCTCTGTCTAAACAAAGATCATGATAGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAAAAGAAAGTAAATCTCTGTCTAAACAAAGATCATGATAGAAC  789

seq1  TTTTCTTCCTCCCCTCCCTTCAGAGCGCTGTCAGATATTGACTCCTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCTCCCCTCCCTTCAGAGCGCTGTCAGATATTGACTCCTTCAT  839

seq1  TGCCTATGTGGGTGCTGATCTGAAAAGCTGTGACCCAGCTGTGGAGGATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATGTGGGTGCTGATCTGAAAAGCTGTGACCCAGCTGTGGAGGATC  889

seq1  CATGTGGCTTGAACCGTGCACGAGTAAGACTCTCCTGGGAATGGGAAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGCTTGAACCGTGCACGAGTAAGACTCTCCTGGGAATGGGAAGTT  939

seq1  TCACTGGCCACGGGCAGGAGTTAGGGTGTTTCATTGATCAAGTTTCTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGCCACGGGCAGGAGTTAGGGTGTTTCATTGATCAAGTTTCTCAG  989

seq1  ATTTGTTTTGTCTGTACTGCTGAGAGACCCAAGAGTCTCTCCTGCCCTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTGTCTGTACTGCTGAGAGACCCAAGAGTCTCTCCTGCCCTAA  1039

seq1  GCTTCTCCTTTCTTTTCTTCTTTAGTCTTGAATTC  1084
      |||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCTTTCTTTTCTTCTTTAGTCTTGAATTC  1074