BAC Information

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BAC

Clone NameB6Ng01-024J22
Chromosome17 (Build37)
Map Location 51,626,523 - 51,774,509
singlet/doubletdoublet
Overlap geneLOC100043452
Upstream genePlcl2, EG654432, Tbc1d5, LOC100043451
Downstream geneSatb1, EG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024J22.bB6Ng01-024J22.g
ACCDH856199DH856200
length1,1251,060
definitionDH856199|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J22, 5' end.DH856200|Mus musculus domesticus DNA, BAC clone: B6Ng01-024J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,626,523 - 51,627,668)(51,773,441 - 51,774,509)
sequence
gaattcacagagagaatttcatacatgggatttaattggagaagctagca
tttcccttttcatttctgttacatatgtccttgtctgccacagaagggaa
gagtatgagattccctcccgttggccaatcttggaagcattttgtgggta
ccatcaaccaccagttttaggttggctcatccacaagttttaggtagtct
acctctcagatgccatgagacccactaaagtttctgtggttgaacaacaa
caacaacaacaacaacaacaacaacaacaaccacatgagtaatttgattc
taactaaatacatcagtcgtctgaggtaaggtctagagttcatatacatg
tgattccgcatggaagaaggtgtcagaccatgcagtttcctcagatccac
tagcactggacacttgtatttgggagagccttttatgtaacccagagaac
attctctgggaaatattggcctagtgttttaattagatcatttaaatgac
atttttcctgttccaggaatgtcccatgtatttctccttcttgacttgtc
ttcattgtgccggccactccatgttgtttaggtcctgctgtgtaagtagt
cattatctcaatggttaagaacagtggtaactcagctaaaaaggaatgtg
attagtctccagtatgtggtgataaatgcttgcaaaaggttgaattaacc
tttgatgctaagaagaaaaggaagaaggaggaggagctaagagaagagga
ggaagaaagaaggaggagaaggaagaggaagaagaagagaggaagaagag
gagtaagaggagaagaagaaagacaaatcagagaaagaggcttggatgca
ggtaacagtatccccagggctgcctgagacttctttctgactggaatatg
aggggcttaatatggcctttaaagacatcagtgagaaatactttcctttt
tattgcaaggacacattgtcttgtgtgctgcagtcatttgactttaaggc
taattgtttccaatttgctgggggaaacctgcgcggataattagacagac
caaagactgactgctcacagactaccaatctctgaaactggagtcagaaa
cgtcattagtctatggggctttcct
gaattctggcctggatacacctgttggagagacttgaaggctacatttac
ttgaaggagctgtgcaactgtgtgcagagtgtctgtcccgtaggactgcc
tggctcagaatacgtgggtctgaaacatgcaacactgccttgctttctaa
caatcacttagacatggaaccagcaaaccggcgttatctattgaatgctg
tcagtagtctagcctaataaaacatccacatgaagggggtgctctccttc
atagccgctcaaatatcgaagcagatagcttaggaagagggaagtttcct
acgttattttgcagtagtaaaagctcccaggaacagtgattattaaacaa
ctagctttgaagtgaaaaggggaggctgcccctgtggtggtttgagtgag
aaatgcttccacaggctcagatattcaaataattgttttccaatcagagg
tgcagtttgaggaggttccagccactcccagtttgcagttcaatatataa
tctcataggctcctgatctggctgtctgctgtgaagccaacgccttcttc
tctgccagtacttataggatcctccctctggaattgtaaggttagataaa
atcctacttaagttgcctgtggtcatggtacttgatcatagaaaccgaag
actaactaatatctcactgatgaattggataatgagtgacagatttacct
aaggcaaacctaacagtgaacagttgattgcgaactcataaaacagacga
tggctctagagacctgagggactgcgaccggagctcggaattggttggag
ggaagagaagcggacaaggtgttattcaacagttccttctaccacaacct
agtccagctttgcttgatcagctcattctaaatatatgtcccagagaatt
cccaggaagccagctgcctacctaattcaagcttgagactgacaaattga
gcttctgaaaaagtaaataaataaaatagcatccacagtcattgtctttt
ccatgtggctcagaaacaagaatcccatagccactctggtccttcccatg
ctgctctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51626523_51627668
seq2: B6Ng01-024J22.b_46_1170

seq1  GAATTCACAGAGAGAATTTCATACATGGGATTTAATTGGAGAAGCTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGAGAATTTCATACATGGGATTTAATTGGAGAAGCTAGCA  50

seq1  TTTCCCTTTTCATTTCTGTTACATATGTCCTTGTCTGCCACAGAAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTTTCATTTCTGTTACATATGTCCTTGTCTGCCACAGAAGGGAA  100

seq1  GAGTATGAGATTCCCTCCCGTTGGCCAATCTTGGAAGCATTTTGTGGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGAGATTCCCTCCCGTTGGCCAATCTTGGAAGCATTTTGTGGGTA  150

seq1  CCATCAACCACCAGTTTTAGGTTGGCTCATCCACAAGTTTTAGGTAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAACCACCAGTTTTAGGTTGGCTCATCCACAAGTTTTAGGTAGTCT  200

seq1  ACCTCTCAGATGCCATGAGACCCACTAAAGTTTCTGTGGTTGAACAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCAGATGCCATGAGACCCACTAAAGTTTCTGTGGTTGAACAACAA  250

seq1  CAACAACAACAACAACAACAACAACAACAACCACATGAGTAATTTGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAACAACAACAACAACAACAACCACATGAGTAATTTGATTC  300

seq1  TAACTAAATACATCAGTCGTCTGAGGTAAGGTCTAGAGTTCATATACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAATACATCAGTCGTCTGAGGTAAGGTCTAGAGTTCATATACATG  350

seq1  TGATTCCGCATGGAAGAAGGTGTCAGACCATGCAGTTTCCTCAGATCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCGCATGGAAGAAGGTGTCAGACCATGCAGTTTCCTCAGATCCAC  400

seq1  TAGCACTGGACACTTGTATTTGGGAGAGCCTTTTATGTAACCCAGAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGGACACTTGTATTTGGGAGAGCCTTTTATGTAACCCAGAGAAC  450

seq1  ATTCTCTGGGAAATATTGGCCTAGTGTTTTAATTAGATCATTTAAATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGGGAAATATTGGCCTAGTGTTTTAATTAGATCATTTAAATGAC  500

seq1  ATTTTTCCTGTTCCAGGAATGTCCCATGTATTTCTCCTTCTTGACTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTGTTCCAGGAATGTCCCATGTATTTCTCCTTCTTGACTTGTC  550

seq1  TTCATTGTGCCGGCCACTCCATGTTGTTTAGGTCCTGCTGTGTAAGTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTGCCGGCCACTCCATGTTGTTTAGGTCCTGCTGTGTAAGTAGT  600

seq1  CATTATCTCAATGGTTAAGAACAGTGGTAACTCAGCTAAAAAGGAATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTCAATGGTTAAGAACAGTGGTAACTCAGCTAAAAAGGAATGTG  650

seq1  ATTAGTCTCCAGTATGTGGTGATAAATGCTTGCAAAAGGTTGAATTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTCCAGTATGTGGTGATAAATGCTTGCAAAAGGTTGAATTAACC  700

seq1  TTTGATGCTAAGAAGAAAAGGAAGAAGGAGGAGGAGCTAAGAGAAGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGCTAAGAAGAAAAGGAAGAAGGAGGAGGAGCTAAGAGAAGAGGA  750

seq1  GGAAGAAAGAAGGAGGAGAAGGAAGAGGAAGAAGAAGAGAGGAAGAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAAGGAGGAGAAGGAAGAGGAAGAAGAAGAGAGGAAGAAGAG  800

seq1  GAGTAAGAGGAGAAGAAGAAAGACAAATCAAGAGAAAGAGGCTTGGATGC  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGTAAGAGGAGAAGAAGAAAGACAAATC-AGAGAAAGAGGCTTGGATGC  849

seq1  AGGTAACAGTATCCCCAGGGCTGCCTGAGACTTCCTTTCTGACTGGAATA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGTAACAGTATCCCCAGGGCTGCCTGAGACTT-CTTTCTGACTGGAATA  898

seq1  TGAGGGGCTTAATATGGCCTTTAAAGAACATCAGGTGGAGAAATACTTTC  950
      |||||||||||||||||||||||||| |||||||   |||||||||||||
seq2  TGAGGGGCTTAATATGGCCTTTAAAG-ACATCAG--TGAGAAATACTTTC  945

seq1  CTTTTTATTGCAAGGACACATTGTCTTGTGTGCCTGCAGTCATTTGATTT  1000
      |||||||||||||||||||||||||||||||| ||||||||||||||  |
seq2  CTTTTTATTGCAAGGACACATTGTCTTGTGTG-CTGCAGTCATTTGA-CT  993

seq1  TTATGGCTTATGTGTTTCCAATTTGCTGGGGGGAAACCTGCGCTGGATAA  1050
      ||| |||| || ||||||||||||||| ||||||||||||||| ||||||
seq2  TTAAGGCTAAT-TGTTTCCAATTTGCT-GGGGGAAACCTGCGC-GGATAA  1040

seq1  TTTAGACCAGACCAAAAGACAGACTGCTCACAGACCTACACAATCTCTGA  1100
       ||||| |||||| |||||| ||||||||||||| |||| ||||||||||
seq2  -TTAGA-CAGACC-AAAGACTGACTGCTCACAGA-CTAC-CAATCTCTGA  1085

seq1  GACATGGAGTCAAGAAACAGTCATTTGCTCACATGGGGCCTTTCCT  1146
       || ||||||| |||||| |||||| | ||  |||||| |||||||
seq2  AAC-TGGAGTC-AGAAAC-GTCATTAG-TC-TATGGGG-CTTTCCT  1125

seq1: chr17_51773441_51774509
seq2: B6Ng01-024J22.g_70_1129 (reverse)

seq1  TCCAGAGCAGGCATGGGAAGGA-CAGAGTGGCTAATGGGATTCTTGTTTC  49
      ||||||||| |||||||||||| |||||||||| ||||||||||||||||
seq2  TCCAGAGCA-GCATGGGAAGGACCAGAGTGGCT-ATGGGATTCTTGTTTC  48

seq1  TGAAGCACATGGAAAAGACAATTGACTGTGGATGCTATTTTTATTTATTT  99
      |||  |||||||||||||||| ||||||||||||||| ||||||||||||
seq2  TGAGCCACATGGAAAAGACAA-TGACTGTGGATGCTA-TTTTATTTATTT  96

seq1  ACTTTTTCAGAAGCTCAATTTGTCAGTCTCAAAGCTTTGAATTAGGTAGG  149
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  ACTTTTTCAGAAGCTCAATTTGTCAGTCTC-AAGC-TTGAATTAGGTAGG  144

seq1  CAGCTGGCTTTCCTGGGAATTCTCTTGGGACATATATTTAGAATGAGCTG  199
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  CAGCTGGC-TTCCTGGGAATTCTC-TGGGACATATATTTAGAATGAGCTG  192

seq1  ATCAAGCAAAGCTGGACCTAGGTTGTGGTAGAAAGGAACTGTTGAATAAC  249
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  ATCAAGCAAAGCTGGA-CTAGGTTGTGGTAG-AAGGAACTGTTGAATAAC  240

seq1  ACCTTGTCCGCTTCTCTTCCCTCCAACCAATTCCGAGCTCCGGTCGCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCCGCTTCTCTTCCCTCCAACCAATTCCGAGCTCCGGTCGCAGT  290

seq1  CCCTCAGGTCTCTAGAGCCATCGTCTGTTTTATGAGTTCGCAATCAACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGTCTCTAGAGCCATCGTCTGTTTTATGAGTTCGCAATCAACTG  340

seq1  TTCACTGTTAGGTTTGCCTTAGGTAAATCTGTCACTCATTATCCAATTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTTAGGTTTGCCTTAGGTAAATCTGTCACTCATTATCCAATTCA  390

seq1  TCAGTGAGATATTAGTTAGTCTTCGGTTTCTATGATCAAGTACCATGACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGATATTAGTTAGTCTTCGGTTTCTATGATCAAGTACCATGACC  440

seq1  ACAGGCAACTTAAGTAGGATTTTATCTAACCTTACAATTCCAGAGGGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAACTTAAGTAGGATTTTATCTAACCTTACAATTCCAGAGGGAGG  490

seq1  ATCCTATAAGTACTGGCAGAGAAGAAGGCGTTGGCTTCACAGCAGACAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATAAGTACTGGCAGAGAAGAAGGCGTTGGCTTCACAGCAGACAGC  540

seq1  CAGATCAGGAGCCTATGAGATTATATATTGAACTGCAAACTGGGAGTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGGAGCCTATGAGATTATATATTGAACTGCAAACTGGGAGTGGC  590

seq1  TGGAACCTCCTCAAACTGCACCTCTGATTGGAAAACAATTATTTGAATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTCCTCAAACTGCACCTCTGATTGGAAAACAATTATTTGAATAT  640

seq1  CTGAGCCTGTGGAAGCATTTCTCACTCAAACCACCACAGGGGCAGCCTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTGTGGAAGCATTTCTCACTCAAACCACCACAGGGGCAGCCTCC  690

seq1  CCTTTTCACTTCAAAGCTAGTTGTTTAATAATCACTGTTCCTGGGAGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCACTTCAAAGCTAGTTGTTTAATAATCACTGTTCCTGGGAGCTT  740

seq1  TTACTACTGCAAAATAACGTAGGAAACTTCCCTCTTCCTAAGCTATCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACTGCAAAATAACGTAGGAAACTTCCCTCTTCCTAAGCTATCTGC  790

seq1  TTCGATATTTGAGCGGCTATGAAGGAGAGCACCCCCTTCATGTGGATGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATATTTGAGCGGCTATGAAGGAGAGCACCCCCTTCATGTGGATGTT  840

seq1  TTATTAGGCTAGACTACTGACAGCATTCAATAGATAACGCCGGTTTGCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGGCTAGACTACTGACAGCATTCAATAGATAACGCCGGTTTGCTG  890

seq1  GTTCCATGTCTAAGTGATTGTTAGAAAGCAAGGCAGTGTTGCATGTTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATGTCTAAGTGATTGTTAGAAAGCAAGGCAGTGTTGCATGTTTCA  940

seq1  GACCCACGTATTCTGAGCCAGGCAGTCCTACGGGACAGACACTCTGCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACGTATTCTGAGCCAGGCAGTCCTACGGGACAGACACTCTGCACA  990

seq1  CAGTTGCACAGCTCCTTCAAGTAAATGTAGCCTTCAAGTCTCTCCAACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCACAGCTCCTTCAAGTAAATGTAGCCTTCAAGTCTCTCCAACAG  1040

seq1  GTGTATCCAGGCCAGAATTC  1069
      ||||||||||||||||||||
seq2  GTGTATCCAGGCCAGAATTC  1060