BAC Information

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BAC

Clone NameB6Ng01-026F14
Chromosome17 (Build37)
Map Location 29,448,874 - 29,602,870
singlet/doubletdoublet
Overlap genePi16, Mtch1, Fgd2
Upstream geneFance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348
Downstream genePim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026F14.bB6Ng01-026F14.g
ACCDH857419DH857420
length936701
definitionDH857419|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F14, 5' end.DH857420|Mus musculus domesticus DNA, BAC clone: B6Ng01-026F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,601,934 - 29,602,870)(29,448,874 - 29,449,572)
sequence
gaattccacaagacttcttgggcaatataaggaggacagttgaatgcagg
accttttgtactaacacgggcctacatttttatcttggtattttggtcaa
atgctgagggattgagcaagaagttaattatcctgaatagaaaaacaaaa
acagtatggattagtaatctattacatagactccctaatatcaggacagg
ggagccagcccgccttgaaacaggaaatcctgcttcacacaaagccggaa
ataccaggaactgattattctgagccggtacagattcaaaacagcttttt
tggccctcctggaaggatggctgaggtagttaatcacccttggagaaaag
gaattcttggagggaggaggggcccgcttcctaacctttgagggctgagg
tcaaaggatgtcccagctctccatttgctcccatgtgacagaacatcaga
gggtccagaagagctgggcacgtgcagtcattgataatttccaggtagct
gaaacccaagaaatttatcaaaggaaaaaatgaaaataaaaaaggaaaaa
aaaaacaacccaacaacaacaagaaatacattaccgggggctggagattt
tgctgggtagtggaacactcacttgacatgtatgtccgcactcccagctc
ctacaaagaagaaaaactaaattaaacctaaccccccccacacacaccct
cttgttcatcttctcaaataaagccatttggttgttgtcgttacatctta
aaatttattttgtgtggacaaacttaagcatggaggtcagttctctccta
ccacgtggttcccagggaatcgaacccaagtcctcaaggttggtggcaat
cgccggttgccctatgagctgtctgcacaggtccaataagccactttaaa
atataaatgtgtgtgtgtgtgtgttgtgtgtgtgtg
gaattcagagagagcagtggggcacagggtcagagtgtgcttcccagcac
tgacataggaaagaagggagagggaagggagggaagaaagaaaaagagag
aaagaaagaagtaaaacccacagactgggttacgtagactgaaacactgc
aaactagaagaaaacctaggcaaccctgaatacagaggtgatgtttaaaa
atgtgatatctgggtgtttggcctacatggtatgtcacatgtgtgcacac
atatgtatgcaatgcccatagaggccaaaagaggccagatcctttggaac
tggcgctatggacagctatgagtcacctcatggaccaaactctgcaagag
caggaacccccttccccagccccaggggaggtttttgcagccagtatcaa
aggcacagtgcataagctggcttgactggaaatcagaacctttcctcagg
gggtggtgcttcagatttgtaatccccgtgaccagaaagatgagcaagag
gcctgagggtttgaggctagcctgggcttcaatgggactattttcaggaa
aaccacacacaaggaaagggtgcatttctgctcttaaatatagtgctctt
taatcatgtatgttagatatagattattttatatataatatacattatat
atatattagggaagacagacaggttgtgttatgggacgcagagggtcaga
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29601934_29602870
seq2: B6Ng01-026F14.b_41_976 (reverse)

seq1  CACACACACACACACACACACACACACACATTTATATTTTAAAGTGGCTT  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACACACACACA-ACACACACACACACACATTTATATTTTAAAGTGGCTT  49

seq1  ATTGGACCTGTGCAGACAGCTCATAGGGCAACCGGCGATTGCCACCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACCTGTGCAGACAGCTCATAGGGCAACCGGCGATTGCCACCAACC  99

seq1  TTGAGGACTTGGGTTCGATTCCCTGGGAACCACGTGGTAGGAGAGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACTTGGGTTCGATTCCCTGGGAACCACGTGGTAGGAGAGAACTG  149

seq1  ACCTCCATGCTTAAGTTTGTCCACACAAAATAAATTTTAAGATGTAACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATGCTTAAGTTTGTCCACACAAAATAAATTTTAAGATGTAACGA  199

seq1  CAACAACCAAATGGCTTTATTTGAGAAGATGAACAAGAGGGTGTGTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACCAAATGGCTTTATTTGAGAAGATGAACAAGAGGGTGTGTGTGG  249

seq1  GGGGGGTTAGGTTTAATTTAGTTTTTCTTCTTTGTAGGAGCTGGGAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTTAGGTTTAATTTAGTTTTTCTTCTTTGTAGGAGCTGGGAGTGC  299

seq1  GGACATACATGTCAAGTGAGTGTTCCACTACCCAGCAAAATCTCCAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATACATGTCAAGTGAGTGTTCCACTACCCAGCAAAATCTCCAGCCC  349

seq1  CCGGTAATGTATTTCTTGTTGTTGTTGGGTTGTTTTTTTTTTCCTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTAATGTATTTCTTGTTGTTGTTGGGTTGTTTTTTTTTTCCTTTTTT  399

seq1  ATTTTCATTTTTTCCTTTGATAAATTTCTTGGGTTTCAGCTACCTGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTTTTCCTTTGATAAATTTCTTGGGTTTCAGCTACCTGGAAA  449

seq1  TTATCAATGACTGCACGTGCCCAGCTCTTCTGGACCCTCTGATGTTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATGACTGCACGTGCCCAGCTCTTCTGGACCCTCTGATGTTCTGT  499

seq1  CACATGGGAGCAAATGGAGAGCTGGGACATCCTTTGACCTCAGCCCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGAGCAAATGGAGAGCTGGGACATCCTTTGACCTCAGCCCTCAA  549

seq1  AGGTTAGGAAGCGGGCCCCTCCTCCCTCCAAGAATTCCTTTTCTCCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGGAAGCGGGCCCCTCCTCCCTCCAAGAATTCCTTTTCTCCAAGG  599

seq1  GTGATTAACTACCTCAGCCATCCTTCCAGGAGGGCCAAAAAAGCTGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAACTACCTCAGCCATCCTTCCAGGAGGGCCAAAAAAGCTGTTTT  649

seq1  GAATCTGTACCGGCTCAGAATAATCAGTTCCTGGTATTTCCGGCTTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTACCGGCTCAGAATAATCAGTTCCTGGTATTTCCGGCTTTGTG  699

seq1  TGAAGCAGGATTTCCTGTTTCAAGGCGGGCTGGCTCCCCTGTCCTGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGGATTTCCTGTTTCAAGGCGGGCTGGCTCCCCTGTCCTGATAT  749

seq1  TAGGGAGTCTATGTAATAGATTACTAATCCATACTGTTTTTGTTTTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTCTATGTAATAGATTACTAATCCATACTGTTTTTGTTTTTCTA  799

seq1  TTCAGGATAATTAACTTCTTGCTCAATCCCTCAGCATTTGACCAAAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATAATTAACTTCTTGCTCAATCCCTCAGCATTTGACCAAAATAC  849

seq1  CAAGATAAAAATGTAGGCCCGTGTTAGTACAAAAGGTCCTGCATTCAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAAAAATGTAGGCCCGTGTTAGTACAAAAGGTCCTGCATTCAACT  899

seq1  GTCCTCCTTATATTGCCCAAGAAGTCTTGTGGAATTC  937
      |||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCTTATATTGCCCAAGAAGTCTTGTGGAATTC  936

seq1: chr17_29448874_29449572
seq2: B6Ng01-026F14.g_68_768

seq1  GAATTCAGAGAGAGCAGTGGGGCACAGGGTCAGAGTGTGCTTCCCAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGAGCAGTGGGGCACAGGGTCAGAGTGTGCTTCCCAGCAC  50

seq1  TGACATAGGAAAGAAGGGAGAGGGAAGGGAGGGAAGAAAGAAAAAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGGAAAGAAGGGAGAGGGAAGGGAGGGAAGAAAGAAAAAGAGAG  100

seq1  AAAGAAAGAAGTAAAACCCACAGACTGGGTTACGTAGACTGAAACACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAGTAAAACCCACAGACTGGGTTACGTAGACTGAAACACTGC  150

seq1  AAACTAGAAGAAAACCTAGGCAACCCTGAATACAGAGGTGATGTTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAAGAAAACCTAGGCAACCCTGAATACAGAGGTGATGTTTAAAA  200

seq1  ATGTGATATCTGGGTGTTTGGCCTACATGGTATGTCACATGTGTGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATATCTGGGTGTTTGGCCTACATGGTATGTCACATGTGTGCACAC  250

seq1  ATATGTATGCAATGCCCATAGAGGCCAAAAGAGGCCAGATCCTTTGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGCAATGCCCATAGAGGCCAAAAGAGGCCAGATCCTTTGGAAC  300

seq1  TGGCGCTATGGACAGCTATGAGTCACCTCATGGACCAAACTCTGCAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCTATGGACAGCTATGAGTCACCTCATGGACCAAACTCTGCAAGAG  350

seq1  CAGGAACCCCCTTCCCCAGCCCCAGGGGAGGTTTTTGCAGCCAGTATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACCCCCTTCCCCAGCCCCAGGGGAGGTTTTTGCAGCCAGTATCAA  400

seq1  AGGCACAGTGCATAAGCTGGCTTGACTGGAAATCAGAACCTTTCCTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGTGCATAAGCTGGCTTGACTGGAAATCAGAACCTTTCCTCAGG  450

seq1  GGGTGGTGCTTCAGATTTGTAATCCCCGTGACCAGAAAGATGAGCAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTGCTTCAGATTTGTAATCCCCGTGACCAGAAAGATGAGCAAGAG  500

seq1  GCCTGAGGGTTTGAGGCTAGCCTGGGCTTCAATGGGACTA-TTTCAGGAA  549
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCCTGAGGGTTTGAGGCTAGCCTGGGCTTCAATGGGACTATTTTCAGGAA  550

seq1  AACCACACACAAGGAAAGGGTGCATTTCTGCTCTTAAATATAGTGCTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACACAAGGAAAGGGTGCATTTCTGCTCTTAAATATAGTGCTCTT  600

seq1  TAATCATGTATGTTAGATATAGATTA-TTTATATATAATATACATTATAT  648
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAATCATGTATGTTAGATATAGATTATTTTATATATAATATACATTATAT  650

seq1  ATATATTAGGGAAGACAGACAGGTTGTGTCATGGGACGCAGAGGGTCAGA  698
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATATATTAGGGAAGACAGACAGGTTGTGTTATGGGACGCAGAGGGTCAGA  700

seq1  C  699
      |
seq2  C  701