BAC Information

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BAC

Clone NameB6Ng01-028G14
Chromosome17 (Build37)
Map Location 63,608,586 - 63,634,536
singlet/doubletdoublet
Overlap geneFbxl17
Upstream geneEfna5
Downstream genePpia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2, LOC669778, Pja2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028G14.bB6Ng01-028G14.g
ACCDH858896DH858897
length1,1921,097
definitionDH858896|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G14, 5' end.DH858897|Mus musculus domesticus DNA, BAC clone: B6Ng01-028G14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,608,586 - 63,609,808)(63,633,421 - 63,634,536)
sequence
gaattctgatcaagcaatttcattgaaaatggaatgaactcttcctgcag
tcctgactcagcagttttactaagatgctaaagaagattaagtgcaagtc
cttataggttcagactagcctttgatttcatctgtccttcgctgcccctg
ctaatgaccccacggaaagtgctctgcatcaggggaaaagtgtttcctgc
tggtgcttttggtgatcgctcacctgttggtactgacatcatgtctgtaa
ctgtctagctatacactgccgaaaacccttctcgtcaacctgtgctcctc
aagtcctgattcatgggaagccacccacactctcttctcccttcaccccc
atctcccaggtctcctgctgctctcttgcagactgctgtgtcccagggtg
taacttcacccaccctcctcctcactataatacgacacatggacgtgatt
cactcttacccaccctttcatactgacatctacacatatcagctgagtct
gcactaattaagggtggatataagacagacctaactcatccccacacctt
taactttcccactaacaccatcaaaggcaggcagcagaccacacacctac
attcactcatacaactttccagaaaaatgtgctttcttagattaaaagtt
tatcttcattaatctctttcttctccacaatgaatttagttacactaaga
tggcttacccttagcaaggagaacaaggcagaagcctcattccacagaga
gcttctcttgctgccatggctcagccccacctcttggatgctcattctct
ggtctgaccatctatagtcacatgacgcctaagaaaatgattctgagaca
tgcattttaaatgcccaggtgaattatttttctgatttgcatactgagag
gccggcagacttctccacagctgatctctgttgttgttctttccctcact
gggctagtgttagaatggtctagaacaatttctggctgtcacagttttgt
actcatccagtagggtttatactgaaatcaggtcagaattaagtatgttc
acggatacatattaataaagtctcgtgctggggtgcaggtgtgcttcctc
agtcactagctctctggctgcatcttctttttaaggcatggcagttctac
catcaggactctgggcttccagataaagcacgcatgggcgtg
gaattcacatcaaaggcttcaggaacaacctccctaaactggagagcagc
gttgacactcactgcttctgctcctccaaatctctcaccgaaagctgttt
taatcacagatttttgctgtggaacttcggatgttccgattttttatgtt
tactgctccatctgtatttgtagtgaaaggtctaaatttgtctcagttca
tctccactccgggactggtgggatctcatgagcacttccccctgaatgca
aagacacgaaggaatgttttcagcgcaaagaccgaatgtgacataaccac
ttgcctttcttttctgattcttagttttgaaaatggaatgtaaatttcac
agttagagtctgtcagaatgtacctgaagaatctgggcacattaccatca
tagaaagtcacggaaactccttgatgtggatatgtaaattacccacaagt
gtgcatttaaaatatctttatcctgtgttccaaaacaaaactgacagggt
gcgggtagttagatagaaccatgcaaagctttcctagttgaaatagttat
gattttgatttttcacaaaacaatgatgaaatagaaatataatggagtaa
ctatggctgtttgtttacacagcagtttggggaaggggaagcaggccagc
acagccaggagtagtcacgcattgtgtcctggaagttgacttatcagctt
tccaacaaacaaacaccagttctcataagctcccccagttgttttccagc
aattgaagttctgtcattctattgtggcatccgacttaagagatgaaaac
tctccaaaccctgtggtttgtcaccacaccagctcttaccgtgagtaaga
taaagctggcttcactgttgactaactggcctcactaaaggcagggctgg
attggagaaatagttcctgccacatgttcctgaggttggttgaaataaca
cagagataccagaaagtcattatgacacctgctagatacaagtgtcattt
catagctagttattatgctatgtgggatagaggactagaactcgggaacc
tccgattctttgtgagtgtttactaaatattattaaattacataggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_63608586_63609808
seq2: B6Ng01-028G14.b_43_1234

seq1  GAATTCTGATCAAGCAATTTCATTGAAAATGGAATGAACTCTTCCTGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCAAGCAATTTCATTGAAAATGGAATGAACTCTTCCTGCAG  50

seq1  TCCTGACTCAGCAGTTTTACTAAGATGCTAAAGAAGATTAAGTGCAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTCAGCAGTTTTACTAAGATGCTAAAGAAGATTAAGTGCAAGTC  100

seq1  CTTATAGGTTCAGACTAGCCTTTGATTTCATCTGTCCTTCGCTGCCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGGTTCAGACTAGCCTTTGATTTCATCTGTCCTTCGCTGCCCCTG  150

seq1  CTAATGACCCCACGGAAAGTGCTCTGCATCAGGGGAAAAGTGTTTCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGACCCCACGGAAAGTGCTCTGCATCAGGGGAAAAGTGTTTCCTGC  200

seq1  TGGTGCTTTTGGTGATCGCTCACCTGTTGGTACTGACATCATGTCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTTTGGTGATCGCTCACCTGTTGGTACTGACATCATGTCTGTAA  250

seq1  CTGTCTAGCTATACACTGCCGAAAACCCTTCTCGTCAACCTGTGCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAGCTATACACTGCCGAAAACCCTTCTCGTCAACCTGTGCTCCTC  300

seq1  AAGTCCTGATTCATGGGAAGCCACCCACACTCTCTTCTCCCTTCACCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGATTCATGGGAAGCCACCCACACTCTCTTCTCCCTTCACCCCC  350

seq1  ATCTCCCAGGTCTCCTGCTGCTCTCTTGCAGACTGCTGTGTCCCAGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAGGTCTCCTGCTGCTCTCTTGCAGACTGCTGTGTCCCAGGGTG  400

seq1  TAACTTCACCCACCCTCCTCCTCACTATAATACGACACATGGACGTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCACCCACCCTCCTCCTCACTATAATACGACACATGGACGTGATT  450

seq1  CACTCTTACCCACCCTTTCATACTGACATCTACACATATCAGCTGAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTACCCACCCTTTCATACTGACATCTACACATATCAGCTGAGTCT  500

seq1  GCACTAATTAAGGGTGGATATAAGACAGACCTAACTCATCCCCACACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAATTAAGGGTGGATATAAGACAGACCTAACTCATCCCCACACCTT  550

seq1  TAACTTTCCCACTAACACCATCAAAGGCAGGCAGCAGACCACACACCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTCCCACTAACACCATCAAAGGCAGGCAGCAGACCACACACCTAC  600

seq1  ATTCACTCATACAACTTTCCAGAAAAATGTGCTTTCTTAGATTAAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCATACAACTTTCCAGAAAAATGTGCTTTCTTAGATTAAAAGTT  650

seq1  TATCTTCATTAATCTCTTTCTTCTCCACAATGAATTTAGTTACACTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCATTAATCTCTTTCTTCTCCACAATGAATTTAGTTACACTAAGA  700

seq1  TGGCTTACCCTTAGCAAGGAGAACAAGGCAGAAGCCTCATTCCACAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACCCTTAGCAAGGAGAACAAGGCAGAAGCCTCATTCCACAGAGA  750

seq1  GCTTCTCTTGCTGCCATGGCTCAGCCCCACCTCTTGGATGCTCATTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTTGCTGCCATGGCTCAGCCCCACCTCTTGGATGCTCATTCTCT  800

seq1  GGTCTGACCATCTATAGTCACATGACGCCTAAGAAAATGATTCTGAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGACCATCTATAGTCACATGACGCCTAAGAAAATGATTCTGAGACA  850

seq1  TGCATTTTAAATGCCCAGGTGAATTATTTTTCTGATTTGCATACTGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTAAATGCCCAGGTGAATTATTTTTCTGATTTGCATACTGAGAG  900

seq1  GCCGGCAGACTTCTCCACAGCTGATCTCTGTTGTTGTTCTTTCCCTCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCAGACTTCTCCACAGCTGATCTCTGTTGTTGTTCTTTCCCTCACT  950

seq1  GGGCTAGTGTTAGAATGGTCTAGAACAATTTCTGGCTGTCCACAGTTTTG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGCTAGTGTTAGAATGGTCTAGAACAATTTCTGGCTGT-CACAGTTTTG  999

seq1  TTACTCATCCAGTAGGGTTTATAACTTGAAATCCAGGTCAAGAAATTAAG  1050
       ||||||||||||||||||||||   |||||| |||||||   |||||||
seq2  -TACTCATCCAGTAGGGTTTATA--CTGAAAT-CAGGTCA--GAATTAAG  1043

seq1  TATGTTCACGGATACATATTTAATTAAAGTCTCGGTTGCTGGTGGTGCAG  1100
      ||||||||||||||||||||  | ||||||||||  |||||| |||||||
seq2  TATGTTCACGGATACATATT--AATAAAGTCTCG--TGCTGG-GGTGCAG  1088

seq1  GTGTGGGCTTCCCTCAGTCACTTAAGCTCTCTGGGCTGCATTCTTCCTTT  1150
      ||||  |||| |||||||||||  |||||||| ||||||| ||||| |||
seq2  GTGT--GCTT-CCTCAGTCACT--AGCTCTCT-GGCTGCA-TCTTCTTTT  1131

seq1  TTAAAAGCCATGGGAAATGTTCCTTACACATCAAGAACTCTGAGCTCCCC  1200
      |   ||| ||||| |   ||||  ||| |||| || |||||| |||  ||
seq2  T---AAGGCATGGCA---GTTC--TAC-CATC-AGGACTCTGGGCT-TCC  1170

seq1  AGATAAAAGCACGCATGTGCGTG  1223
      |||| |||||||||||| |||||
seq2  AGAT-AAAGCACGCATGGGCGTG  1192

seq1: chr17_63633421_63634536
seq2: B6Ng01-028G14.g_67_1163 (reverse)

seq1  ACCTATGTAAAATTTAAATAAATTATTTTAGTAAACAACTCACAAAGAAA  50
      ||||||||||   || |||||  || |||||||||| |||||||||| ||
seq2  ACCTATGTAA---TTTAATAA--TA-TTTAGTAAAC-ACTCACAAAG-AA  42

seq1  TTCGAGGTTTCCCCGAGTTCTAGTCCTCTATCCCACATAGCATAGATAAA  100
      |  ||||||  ||||||||||||||||||||||||||||||||| || ||
seq2  TCGGAGGTT--CCCGAGTTCTAGTCCTCTATCCCACATAGCATA-AT-AA  88

seq1  CTAGCTAATGAAATGAACAACTTGTTATCTAGCAGGTGTCATAATGACTT  150
      |||||| |||||||||   ||||| |||||||||||||||||||||||||
seq2  CTAGCT-ATGAAATGA--CACTTG-TATCTAGCAGGTGTCATAATGACTT  134

seq1  TCTGGTAATCTCTGTGTTATTTCAACCAACCTCAGGAACATGTGGCAGGA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGT-ATCTCTGTGTTATTTCAACCAACCTCAGGAACATGTGGCAGGA  183

seq1  ACCTATTTTCTCCAATCCAGCCCTGCCTTTAGTGAGGCCAGTTAGTCAAC  250
      | ||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CTA-TTTCTCCAATCCAGCCCTGCCTTTAGTGAGGCCAGTTAGTCAAC  231

seq1  AGTGAAGCCAGCTTTATCTTACTCACGGTAAGAGCTGGTGTGGTGACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGCCAGCTTTATCTTACTCACGGTAAGAGCTGGTGTGGTGACAAA  281

seq1  CCACAGGGTTTGGAGAGTTTTCATCTCTTAAGTCGGATGCCACAATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGTTTGGAGAGTTTTCATCTCTTAAGTCGGATGCCACAATAGAA  331

seq1  TGACAGAACTTCAATTGCTGGAAAACAACTGGGGGAGCTTATGAGAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAACTTCAATTGCTGGAAAACAACTGGGGGAGCTTATGAGAACTG  381

seq1  GTGTTTGTTTGTTGGAAAGCTGATAAGTCAACTTCCAGGACACAATGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTTTGTTGGAAAGCTGATAAGTCAACTTCCAGGACACAATGCGT  431

seq1  GACTACTCCTGGCTGTGCTGGCCTGCTTCCCCTTCCCCAAACTGCTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACTCCTGGCTGTGCTGGCCTGCTTCCCCTTCCCCAAACTGCTGTGT  481

seq1  AAACAAACAGCCATAGTTACTCCATTATATTTCTATTTCATCATTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAGCCATAGTTACTCCATTATATTTCTATTTCATCATTGTTTT  531

seq1  GTGAAAAATCAAAATCATAACTATTTCAACTAGGAAAGCTTTGCATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATCAAAATCATAACTATTTCAACTAGGAAAGCTTTGCATGGTT  581

seq1  CTATCTAACTACCCGCACCCTGTCAGTTTTGTTTTGGAACACAGGATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAACTACCCGCACCCTGTCAGTTTTGTTTTGGAACACAGGATAAA  631

seq1  GATATTTTAAATGCACACTTGTGGGTAATTTACATATCCACATCAAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTAAATGCACACTTGTGGGTAATTTACATATCCACATCAAGGAG  681

seq1  TTTCCGTGACTTTCTATGATGGTAATGTGCCCAGATTCTTCAGGTACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTGACTTTCTATGATGGTAATGTGCCCAGATTCTTCAGGTACATT  731

seq1  CTGACAGACTCTAACTGTGAAATTTACATTCCATTTTCAAAACTAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGACTCTAACTGTGAAATTTACATTCCATTTTCAAAACTAAGAAT  781

seq1  CAGAAAAGAAAGGCAAGTGGTTATGTCACATTCGGTCTTTGCGCTGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGAAAGGCAAGTGGTTATGTCACATTCGGTCTTTGCGCTGAAAA  831

seq1  CATTCCTTCGTGTCTTTGCATTCAGGGGGAAGTGCTCATGAGATCCCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTCGTGTCTTTGCATTCAGGGGGAAGTGCTCATGAGATCCCACC  881

seq1  AGTCCCGGAGTGGAGATGAACTGAGACAAATTTAGACCTTTCACTACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCGGAGTGGAGATGAACTGAGACAAATTTAGACCTTTCACTACAAA  931

seq1  TACAGATGGAGCAGTAAACATAAAAAATCGGAACATCCGAAGTTCCACAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGAGCAGTAAACATAAAAAATCGGAACATCCGAAGTTCCACAG  981

seq1  CAAAAATCTGTGATTAAAACAGCTTTCGGTGAGAGATTTGGAGGAGCAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCTGTGATTAAAACAGCTTTCGGTGAGAGATTTGGAGGAGCAGA  1031

seq1  AGCAGTGAGTGTCAACGCTGCTCTCCAGTTTAGGGAGGTTGTTCCTGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGAGTGTCAACGCTGCTCTCCAGTTTAGGGAGGTTGTTCCTGAAG  1081

seq1  CCTTTGATGTGAATTC  1116
      ||||||||||||||||
seq2  CCTTTGATGTGAATTC  1097