BAC Information

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BAC

Clone NameB6Ng01-029P11
Chromosome17 (Build37)
Map Location 71,961,229 - 72,135,300
singlet/doubletdoublet
Overlap geneWdr43, 4632412N22Rik, BC027072, Clip4
Upstream geneDlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451
Downstream geneAlk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029P11.bB6Ng01-029P11.g
ACCDH860012DH860013
length1,087818
definitionDH860012|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P11, 5' end.DH860013|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,961,229 - 71,962,338)(72,134,706 - 72,135,300)
sequence
gaattctctatttggaccagacaagtcgcaaactcacagggattcatcca
ttgctgctagactcaaaggcatgtactactaccacactttgtgtgtttag
aattcagtttttggctgtcttcacactcattgtgcatctctctaaccccc
atgtaaatgttcatctgatttgttgttgttttcctttttttttttttttt
tttttgagacagggtttctctgtgtagccctggctgtcctggaactcact
ttgtagaccaggctggccttgaactcttgaaatctaactgcctctgcctc
ccaagtgctgggattaaaggcgtgcaccaccactgccaggcatctgtttt
tttttttgtttgtttgtttgttttgttttgtttttttccttaaaaggctg
ctagtcactgggtttaggaactacttcagataaaattattttgagattct
taaccagattacatatgcaaagcctaaggccacacctacagttaacagca
ttagaactcagacgcgtgctttttggtgacactattcaattcaccactat
atccatgtggagatgctgaatacggaattgaaaatttaagttcgggggcg
gtgggagacaaagtttggaggcatacaaacatttgaccactagcacgtga
atggtggctaagctttatggaggaagaaaaaaagccccaaggaactgtga
tgccagaaagtggaggaaatgaggaacatgctaaactgaaggcaagaaat
caaaggggaggcagtgagtgtgaggttatggaggacggacttgctaacat
gatggactcttatattgtatcagaggttaggcttcctagatggacactta
cattgtatcggaggtgggcttcctaacgatggactcttactttgtatcgg
aggtctttcagaccttcactgtagcttcccagagaaggagggttggaagc
tctgctggaggaggaaagtaccatacttctgtttgtccgcatggttcagg
accgcaataaaccgatccctgaatctataaagagagagtggggagaattc
gacttcgcacaggggacatttgctaacgaaaccaatg
gaattccaaaatataagtatttgtattttacaaacacagacttcaatgat
ccttctatttaatacctataaaacatctgtccactcaccacacatatgtt
acaagtatgtgagcctctattttcatgagacttaaaaacaaacctaagca
aataagcatgaaaaagcaccaccctaaggaccctttcatttgctacaaac
aaaacactggaaaagcagccttgagccctacacggaatatcagatacccg
ccctcaaggagttccatcacgattccaataaatactgtttctcattaagt
cctaagctgtgcattccaaagataaagagttaggcactcgccctcctata
gatactagcccagggctagatagctaccagaaacacaaatactgtacaat
tagtaatctgattgacaacagctggttataatgcagacaacgagataaga
cagcctaggatttctaaggatttctgataattagggactggatgaccacc
taggacatgtggctagctacaagtggcttttaaattgcccagttggtcta
gctcagagtttcttaatactgagggctgggaaggggatgacatacaatta
aatatggaatgtcacacacacacaaaaaaaatggcaatcagaaataattc
aggtttccaaatgcacagtcccctaagaataatacaaattcaaatgcata
ttgtatctggggtatttcagccagtgcttacagcgttatcatgtgacctc
actgcggccttggctctgaacacacagtgttcactgaacatgtggacatg
ccattcagtgccatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_71961229_71962338
seq2: B6Ng01-029P11.b_46_1132

seq1  GAATTCTCTATTTGGACCAGACAAGTCGCAAACTCACAGGGATTCATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTTGGACCAGACAAGTCGCAAACTCACAGGGATTCATCCA  50

seq1  TTGCTGCTAGACTCAAAGGCATGTACTACTACCACACTTTGTGTGTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTAGACTCAAAGGCATGTACTACTACCACACTTTGTGTGTTTAG  100

seq1  AATTCAGTTTTTGGCTGTCTTCACACTCATTGTGCATCTCTCTAACCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTTTTTGGCTGTCTTCACACTCATTGTGCATCTCTCTAACCCCC  150

seq1  ATGTAAATGTTCATCTGATTTGTTGTTGTTTTCCTTTTTTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGTTCATCTGATTTGTTGTTGTTTTCCTTTTTTTTTTTTTTTT  200

seq1  TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  250

seq1  TTGTAGACCAGGCTGGCCTTGAACTCTTGAAATCTAACTGCCTCTGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGACCAGGCTGGCCTTGAACTCTTGAAATCTAACTGCCTCTGCCTC  300

seq1  CCAAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCAGGCATCTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCAGGCATCTGTTTT  350

seq1  TTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTTTCCTTAGAAGGCTG  400
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTTTCCTTAAAAGGCTG  400

seq1  CTAGTCACTGGGTTTAGGAACTACTTCAGATAAAATTATTTTGAGATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCACTGGGTTTAGGAACTACTTCAGATAAAATTATTTTGAGATTCT  450

seq1  TAACCAGATTACATATGCAAAGCCTAAGGCCACACCTACAGTTAACAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGATTACATATGCAAAGCCTAAGGCCACACCTACAGTTAACAGCA  500

seq1  TTAGAACTCAGACGCGTGCTTTTTGGTGACACTATTCAATTCACCACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTCAGACGCGTGCTTTTTGGTGACACTATTCAATTCACCACTAT  550

seq1  ATCCATGTGGAGATGCTGAATACGGAATTGAAAATTTAAGTTCGGGGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTGGAGATGCTGAATACGGAATTGAAAATTTAAGTTCGGGGGCG  600

seq1  GTGGGAGACAAAGTTTGGAGGCATACAAACATTTGACCACTAGCACGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGACAAAGTTTGGAGGCATACAAACATTTGACCACTAGCACGTGA  650

seq1  ATGGTGGCTAAGCTTTATGGAGGAAGAAAAAAAGCCCCAAGGAACTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCTAAGCTTTATGGAGGAAGAAAAAAAGCCCCAAGGAACTGTGA  700

seq1  TGCCAGAAAGTGGAGGAAATGAGGAACATGCTAAACTGAAGGCAAGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAAAGTGGAGGAAATGAGGAACATGCTAAACTGAAGGCAAGAAAT  750

seq1  CAAAGGGGAGGCAGTGAGTGTGAGGTTATGGAGGACGGACTTGCTAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGGAGGCAGTGAGTGTGAGGTTATGGAGGACGGACTTGCTAACAT  800

seq1  GATGGACTCTTATATTGTATCAGAGGTTAGGCTTCCTAGATGGACACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACTCTTATATTGTATCAGAGGTTAGGCTTCCTAGATGGACACTTA  850

seq1  CATTGTATCGGAGGTTGGGCTTCCTAACGATGGACTCTTACTTTGTATCG  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATTGTATCGGAGG-TGGGCTTCCTAACGATGGACTCTTACTTTGTATCG  899

seq1  GAGGTCTTTCAGACCTTCACTGTAGCTTCCCAGAGAAGGGAGGGTGGAAA  950
      ||||||||||||||||||||||||||||||||||||| ||||||| | ||
seq2  GAGGTCTTTCAGACCTTCACTGTAGCTTCCCAGAGAA-GGAGGGTTGGAA  948

seq1  GCTCTGCTGGAGGGAGGAAAGTAACCAATACTTCTGTTTGTCCGCATGGT  1000
      ||||||||||| |||||||||||  | |||||||||||||||||||||||
seq2  GCTCTGCTGGA-GGAGGAAAGTA--CCATACTTCTGTTTGTCCGCATGGT  995

seq1  TCAGGAACCGCCATATAAAACCAGATCCACTGAATCTAATAGAAGAGAGA  1050
      ||||| ||||| ||   ||||| ||||| |||||||| ||| ||||||||
seq2  TCAGG-ACCGCAAT---AAACC-GATCC-CTGAATCT-ATA-AAGAGAGA  1037

seq1  GTGGGGAGAAGTCTCGAACATACGGGCACAGGGGACATTTTGCTAAACAG  1100
      |||||||||| ||    || |    |||||||||||| ||||||||   |
seq2  GTGGGGAGAATTC---GACTT---CGCACAGGGGACA-TTTGCTAA--CG  1078

seq1  AACACCAATG  1110
      || |||||||
seq2  AA-ACCAATG  1087

seq1: chr17_72134706_72135300
seq2: B6Ng01-029P11.g_65_659 (reverse)

seq1  GTATGTCATCCCCTTCCCAGCCCTCAGTATTAAGAAACTCTGAGCTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCATCCCCTTCCCAGCCCTCAGTATTAAGAAACTCTGAGCTAGAC  50

seq1  CAACTGGGCAATTTAAAAGCCACTTGTAGCTAGCCACATGTCCTAGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGGCAATTTAAAAGCCACTTGTAGCTAGCCACATGTCCTAGGTGG  100

seq1  TCATCCAGTCCCTAATTATCAGAAATCCTTAGAAATCCTAGGCTGTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGTCCCTAATTATCAGAAATCCTTAGAAATCCTAGGCTGTCTTA  150

seq1  TCTCGTTGTCTGCATTATAACCAGCTGTTGTCAATCAGATTACTAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTGTCTGCATTATAACCAGCTGTTGTCAATCAGATTACTAATTGT  200

seq1  ACAGTATTTGTGTTTCTGGTAGCTATCTAGCCCTGGGCTAGTATCTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATTTGTGTTTCTGGTAGCTATCTAGCCCTGGGCTAGTATCTATAG  250

seq1  GAGGGCGAGTGCCTAACTCTTTATCTTTGGAATGCACAGCTTAGGACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGAGTGCCTAACTCTTTATCTTTGGAATGCACAGCTTAGGACTTA  300

seq1  ATGAGAAACAGTATTTATTGGAATCGTGATGGAACTCCTTGAGGGCGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAACAGTATTTATTGGAATCGTGATGGAACTCCTTGAGGGCGGGT  350

seq1  ATCTGATATTCCGTGTAGGGCTCAAGGCTGCTTTTCCAGTGTTTTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATATTCCGTGTAGGGCTCAAGGCTGCTTTTCCAGTGTTTTGTTTG  400

seq1  TAGCAAATGAAAGGGTCCTTAGGGTGGTGCTTTTTCATGCTTATTTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATGAAAGGGTCCTTAGGGTGGTGCTTTTTCATGCTTATTTGCTT  450

seq1  AGGTTTGTTTTTAAGTCTCATGAAAATAGAGGCTCACATACTTGTAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTTTTTAAGTCTCATGAAAATAGAGGCTCACATACTTGTAACAT  500

seq1  ATGTGTGGTGAGTGGACAGATGTTTTATAGGTATTAAATAGAAGGATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGTGAGTGGACAGATGTTTTATAGGTATTAAATAGAAGGATCAT  550

seq1  TGAAGTCTGTGTTTGTAAAATACAAATACTTATATTTTGGAATTC  595
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTGTGTTTGTAAAATACAAATACTTATATTTTGGAATTC  595