This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
B6Ng01-030I20
Chromosome
17 (Build37)
Map Location
90,892,633 - 91,043,494
singlet/doublet
doublet
Overlap gene
Nrxn1
Upstream gene
LOC100043906
Downstream gene
EG668871
,
LOC668872
,
LOC627235
,
LOC100043741
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC100043906
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043906
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 771 ESTs, 26 Proteins
name
Nrxn1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18189
MGI:1096391
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG668871
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:668871
MGI:3649040
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins
pseudo
: _no_value
name
LOC668872
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:668872
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 Proteins
pseudo
: _no_value
name
LOC627235
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:627235
definition
note
: haloacid dehalogenase-like hydrolase domain containing 4 pseudogene
pseudo
: _no_value
name
LOC100043741
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043741
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 1 Protein
name
LOC100043906
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149268946
GeneID:100043906
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 696 ESTs, 2 Proteins
product
: similar to nuclear pore-targeting complex component of 58 kDa, transcript variant 2
transcript_id
: XM_001481215.1
name
LOC100043906
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149268944
GeneID:100043906
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 771 ESTs, 25 Proteins
product
: similar to nuclear pore-targeting complex component of 58 kDa, transcript variant 1
transcript_id
: XM_001481214.1
name
Nrxn1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:116875859
GeneID:18189
MGI:1096391
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: neurexin I
transcript_id
: NM_020252.2
name
LOC100043741
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149268839
GeneID:100043741
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 1 Protein
product
: similar to meltrin alpha
transcript_id
: XM_001480862.1
name
LOC100043906
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149268947
GeneID:100043906
definition
codon_start
: 1
product
: similar to nuclear pore-targeting complex component of 58 kDa isoform 2
protein_id
: XP_001481265.1
name
LOC100043906
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149268945
GeneID:100043906
definition
codon_start
: 1
product
: similar to nuclear pore-targeting complex component of 58 kDa isoform 1
protein_id
: XP_001481264.1
name
Nrxn1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:116875860
GeneID:18189
MGI:1096391
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence TAS]; GO:0042734 - presynaptic membrane [Evidence IDA]
GO_function
: GO:0005246 - calcium channel regulator activity [Evidence IGI]; GO:0005515 - protein binding [Evidence IPI] [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]; GO:0007269 - neurotransmitter secretion [Evidence TAS] [Evidence IGI]; GO:0007268 - synaptic transmission [Evidence IGI]; GO:0007416 - synaptogenesis [Evidence IGI]
codon_start
: 1
note
: neurexin I beta; neurexin I alpha; alpha-latrotoxin receptor (calcium-dependent)
product
: neurexin I
protein_id
: NP_064648.2
name
LOC100043741
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149268840
GeneID:100043741
definition
codon_start
: 1
product
: similar to meltrin alpha
protein_id
: XP_001480912.1
name
EG668871
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668871
definition
number
: 1
pseudo
: _no_value
name
EG668871
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668871
definition
number
: 2
pseudo
: _no_value
name
EG668871
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668871
definition
number
: 3
pseudo
: _no_value
name
LOC668872
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668872
definition
number
: 1
pseudo
: _no_value
name
LOC668872
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668872
definition
number
: 2
pseudo
: _no_value
name
LOC668872
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668872
definition
number
: 3
pseudo
: _no_value
name
LOC668872
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:668872
definition
number
: 4
pseudo
: _no_value
clone name
MSMg01-372G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-492G18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-391B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363A20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-298C03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-046I10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-062D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385B15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-097N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-070F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384B20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322J24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363H12
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-175E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-266F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343M13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-480H02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479F07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545A18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348K13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-520J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-492P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-232N11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356E24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470O04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410F20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-308M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-264L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-267I02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-482J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-199K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-536B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-331F05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-151H16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-462K22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-454C21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-333I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-107D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-300N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-332E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-332E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-260H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526K11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-065I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-122I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389L19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-092I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-182D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-055M18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-300K02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261K03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-191B05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490D09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-269P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-149I18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-300I09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-146M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494J17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-146D13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-523H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358B08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-366L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-288D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-081G21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546E17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481I21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-487J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-075L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-528B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-521H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-395B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531N22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-473K08
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-473K09
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-165O07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-165N24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-078I05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-490O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411P03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-397E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-157B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-088D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111K05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080O04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-112E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-096D09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-112K08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-158J14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049C09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-179G07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-276C05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-060F11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-148B02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-316I16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-192O16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-199H18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-160L17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-267J07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-313P09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-221E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-143J02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-051E13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-079O01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-236N05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259F07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-264N20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-290E21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-196P21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-078L24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-181K17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-050L21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-057P24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-115D11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-203O19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-229E13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-039O01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-048N23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-126A13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-125P15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-169E13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-202N11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-321G08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-269G22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-209H18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-223C01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-114A08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-343E12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-309B16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-223B17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-219P18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-092N05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-194P19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-028M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-193P22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-219H11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-133A08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-049C01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-275D15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-252J09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-020F24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-143H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-034J24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-337C10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-030I20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-318D13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-332F12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-273P20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-009G04
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