BAC Information

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BAC

Clone NameB6Ng01-031C15
Chromosome17 (Build37)
Map Location 28,263,684 - 28,361,454
singlet/doubletdoublet
Overlap geneScube3, LOC100042764, Zfp523, Def6
Upstream gene2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik
Downstream genePpard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031C15.bB6Ng01-031C15.g
ACCDH860857DH860858
length1,1141,068
definitionDH860857|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C15, 5' end.DH860858|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,263,684 - 28,264,809)(28,360,361 - 28,361,454)
sequence
gaattctttctgcttcctggatgttccacctcttatttcctgcttaagcc
ataggtcatcagatgtattactgacaggtgctatatccatacagacataa
gatattctctctacagtagccaaggataacctgacttcctatctccattc
cccaaatcctgggacaagaggcacgcatcaccaagcttggtttgtactgg
ggatagatggaaggctttgtgcatgctgggtcagctttaccaacagacct
tcatccccagctcaagtttgttttctagtttttatttttgtgacagcagc
tcgacaggtcacccaggctggcctcagacacttgccctcctgcctcagcc
tcctgagtgctgggaaccactgcctgtttggattccccgattccttatct
tgagaagccaatctgaatctcccttagtgttcacgcccttgctgccccgg
aagctgagttcatcttgagagcctggctctgaagtaccagcctttaaatc
agcaattcttaccaggcagtggtggcacacgcctttaatcccagcactcg
ggaggcagaggcaggcagattttttagtttgaggccagcctggtctacaa
agtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaa
caaacaaacaaataaacaaaaaagtctcacaacagggggctagagatatg
gctcagtggataagaacactgactgctcttccgaaggtcctgagttcaaa
tcccagcacccacatggtggctcacagccactcataatgagatctgatgc
tctcttctggtgtgtctgaagacagctacagcatactttataaatctttt
ttttttaaagacagtagtaaaattgcagttacacaatagcaatgaaaata
atcttatgcttgggagggggctcaccacagcatgagcaactgtattccag
ggtcgcagcattagaaggttgatacaaccgattcaagtgtttaccctgtg
tctgtcaccctagacttcttcagcagactggcaggttggcagctcatggg
tccccctcctgacctcactggtccagctaagcccctctctaagattaaaa
acaaaaggctggaa
gaattctgaaccaggtctcattctaccaggggttttccctagccctaacc
ttgttccggccctaccctaacattcgttaggccatgcccaaagcatccag
gctctactccaacctattcccctaagggcccctcaggccccgcccacagc
atctttcagtctctaccttaggtccatccttcagccaatgggctccaccc
tatctaggccccgcccatagcatcctccagaccatggactacgccctgct
cttcttcctgtcacgccccggtcataaccccgccccaacccttccccggc
cccgccctctgggccagtctcacctgctccgcctcccgcagctggccctc
cagagcctgctgcagctccttgtgctggctacggcggcgctcctcctctt
cctgcagcagccgctcggcctgccgctgagcctcctgcagcagctccagt
tcttgcagcttcctctccttctcctcctgcagctgctgcagtcgcagcag
ctcctcctccttggctgcccggcgtcgctcgcgctgttcccgctgctccc
gccgcttctgtttcaggtccttgtgcagcgacgtcttcccctccgcctgc
agccggatcgcagtctggatggctaagggcagagccggacggagtcagcc
ctggtctagtcaccaccgcaaaggggccccaaaggtcactccggtgaaca
ggcccagttagacccaggccggcactcaccggccgtccactcctggcgct
ggcgggtgtctgaggcgctcatctcataggtgcggctggcagtcttcaca
caaaacatgcagcgctttccttcgcggtccggaagcacctacaggatggc
ccaggccaagtgacttcgctgacataggagccacatctgcccagtagtac
ccagctcagcttctctctttctctggctgacatcttctctgggacgtcta
ccttgcagagtatgcatgtctggggtggatcgttagtacgggtggtgcgg
ccacttaatctggtattctcccaaagttagtaaatgtaatgctgaacatg
tgcttggagactcatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28263684_28264809
seq2: B6Ng01-031C15.b_44_1157

seq1  GAATTCTTTCTGCTTCCTGGATGTTCCACCTCTTATTTCCTGCTTAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGCTTCCTGGATGTTCCACCTCTTATTTCCTGCTTAAGCC  50

seq1  ATAGGTCATCAGATGTATTACTGACAGGTGCTATATCCATACAGACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCATCAGATGTATTACTGACAGGTGCTATATCCATACAGACATAA  100

seq1  GATATTCTCTCTACAGTAGCCAAGGATAACCTGACTTCCTATCTCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCTCTCTACAGTAGCCAAGGATAACCTGACTTCCTATCTCCATTC  150

seq1  CCCAAATCCTGGGACAAGAGGCACGCATCACCAAGCTTGGTTTGTACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCCTGGGACAAGAGGCACGCATCACCAAGCTTGGTTTGTACTGG  200

seq1  GGATAGATGGAAGGCTTTGTGCATGCTGGGTCAGCTTTACCAACAGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGATGGAAGGCTTTGTGCATGCTGGGTCAGCTTTACCAACAGACCT  250

seq1  TCATCCCCAGCTCAAGTTTGTTTTCTAGTTTTTATTTTTGTGACAGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCCAGCTCAAGTTTGTTTTCTAGTTTTTATTTTTGTGACAGCAGC  300

seq1  TCGACAGGTCACCCAGGCTGGCCTCAGACACTTGCCCTCCTGCCTCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACAGGTCACCCAGGCTGGCCTCAGACACTTGCCCTCCTGCCTCAGCC  350

seq1  TCCTGAGTGCTGGGAACCACTGCCTGTTTGGATTCCCCGATTCCTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCTGGGAACCACTGCCTGTTTGGATTCCCCGATTCCTTATCT  400

seq1  TGAGAAGCCAATCTGAATCTCCCTTAGTGTTCACGCCCTTGCTGCCCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCCAATCTGAATCTCCCTTAGTGTTCACGCCCTTGCTGCCCCGG  450

seq1  AAGCTGAGTTCATCTTGAGAGCCTGGCTCTGAAGTACCAGCCTTTAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGTTCATCTTGAGAGCCTGGCTCTGAAGTACCAGCCTTTAAATC  500

seq1  AGCAATTCTTACCAGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTCTTACCAGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTCG  550

seq1  GGAGGCAGAGGCAGGCAGATTTTTTAGTTTGAGGCCAGCCTGGTCTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGCAGATTTTTTAGTTTGAGGCCAGCCTGGTCTACAA  600

seq1  AGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAA  650

seq1  CAAACAAACAAATAAACAAAAAAGTCTCACAACAGGGGGCTAGAGATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAATAAACAAAAAAGTCTCACAACAGGGGGCTAGAGATATG  700

seq1  GCTCAGTGGATAAGAACACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGATAAGAACACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAA  750

seq1  TCCCAGCACCCACATGGTGGCTCACAGCCACTCATAATGAGATCTGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACCCACATGGTGGCTCACAGCCACTCATAATGAGATCTGATGC  800

seq1  TCTCTTCTGGTGTGTCTGAAGACAGCTACAGCATACTTTATAAATCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGGTGTGTCTGAAGACAGCTACAGCATACTTTATAAATCTTTT  850

seq1  TTTTTTAAAGACAGTAGTAAAATTGCAGTTACACAATAGCAATGAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGACAGTAGTAAAATTGCAGTTACACAATAGCAATGAAAATA  900

seq1  ATCTTATGCTTGGGAGGAGGGGCTCACCACAGCATGAGCAACTGTATTCA  950
      ||||||||||||||||  ||||||||||||||||||||||||||||||| 
seq2  ATCTTATGCTTGGGAG--GGGGCTCACCACAGCATGAGCAACTGTATTCC  948

seq1  AGGGTCGCAGCATTAGGAAGGTTGATACAACCGATTCAAGTGTTTACACT  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AGGGTCGCAGCATTA-GAAGGTTGATACAACCGATTCAAGTGTTTACCCT  997

seq1  GTGTCTTGTCACACTTAGACTTCTCCAGCAGACTGGCAGTTTTGGCAGCT  1050
      ||||| |||||| | ||||||||| ||||||||||||||  |||||||||
seq2  GTGTC-TGTCAC-CCTAGACTTCTTCAGCAGACTGGCAG-GTTGGCAGCT  1044

seq1  CATGGTGTCCTCTTCCTTGACCTCACTGTTCCATGGCTAAGCACCTTCTC  1100
      ||||| |||| | ||| ||||||||||| ||||  ||||||| || ||||
seq2  CATGG-GTCCCCCTCC-TGACCTCACTGGTCCA--GCTAAGC-CCCTCTC  1089

seq1  TAAGATTAAAGAACAAGAGGCTGGAA  1126
      |||||||||| ||||| |||||||||
seq2  TAAGATTAAA-AACAAAAGGCTGGAA  1114

seq1: chr17_28360361_28361454
seq2: B6Ng01-031C15.g_67_1134 (reverse)

seq1  CTGAGTGAGGCTCCAGGCACATGTTCAAGCATGTACTATGTACTAAACCT  50
      |||| |||| ||||| |||||||||| ||||| ||| || ||||||  ||
seq2  CTGA-TGAGTCTCCAAGCACATGTTC-AGCAT-TAC-ATTTACTAA--CT  44

seq1  TGTGGAGAGATACCAAGAATAAAGTGGCTCGCACGCACCCCGTAACTAAC  100
      |  ||||| ||||||   || ||||||| ||||| || ||||| ||||||
seq2  TTGGGAGA-ATACCA--GATTAAGTGGC-CGCAC-CA-CCCGT-ACTAAC  87

seq1  GATCCACCCCAGACCATGCATACTCCTGGCAGGGTAGGAACGGTCCCAGA  150
      ||||||||||||| |||||||||||   ||| |||||  || ||||||||
seq2  GATCCACCCCAGA-CATGCATACTC--TGCAAGGTAG--AC-GTCCCAGA  131

seq1  GAAGATGGTCAGCCAAGAGAAAGAGGAGGAAGCTGGAGCTGGGGTACTAC  200
      |||||| ||||||| ||||||||||   |||||| ||||| |||||||||
seq2  GAAGAT-GTCAGCC-AGAGAAAGAG--AGAAGCT-GAGCT-GGGTACTAC  175

seq1  TGGGGCAGATGTGGCTCCTATGTCAGCGAAGTCACTTGGCCTGGGCCATC  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GGGCAGATGTGGCTCCTATGTCAGCGAAGTCACTTGGCCTGGGCCATC  224

seq1  CTGTAGGTGCTTCCGGACCGCGAAGGAAAGCGCTGCATGTTTTGTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTGCTTCCGGACCGCGAAGGAAAGCGCTGCATGTTTTGTGTGAA  274

seq1  GACTGCCAGCCGCACCTATGAGATGAGCGCCTCAGACACCCGCCAGCGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCAGCCGCACCTATGAGATGAGCGCCTCAGACACCCGCCAGCGCC  324

seq1  AGGAGTGGACGGCCGGTGAGTGCCGGCCTGGGTCTAACTGGGCCTGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGGACGGCCGGTGAGTGCCGGCCTGGGTCTAACTGGGCCTGTTCA  374

seq1  CCGGAGTGACCTTTGGGGCCCCTTTGCGGTGGTGACTAGACCAGGGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGTGACCTTTGGGGCCCCTTTGCGGTGGTGACTAGACCAGGGCTGA  424

seq1  CTCCGTCCGGCTCTGCCCTTAGCCATCCAGACTGCGATCCGGCTGCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTCCGGCTCTGCCCTTAGCCATCCAGACTGCGATCCGGCTGCAGGC  474

seq1  GGAGGGGAAGACGTCGCTGCACAAGGACCTGAAACAGAAGCGGCGGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAAGACGTCGCTGCACAAGGACCTGAAACAGAAGCGGCGGGAGC  524

seq1  AGCGGGAACAGCGCGAGCGACGCCGGGCAGCCAAGGAGGAGGAGCTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGAACAGCGCGAGCGACGCCGGGCAGCCAAGGAGGAGGAGCTGCTG  574

seq1  CGACTGCAGCAGCTGCAGGAGGAGAAGGAGAGGAAGCTGCAAGAACTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGCAGCAGCTGCAGGAGGAGAAGGAGAGGAAGCTGCAAGAACTGGA  624

seq1  GCTGCTGCAGGAGGCTCAGCGGCAGGCCGAGCGGCTGCTGCAGGAAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCAGGAGGCTCAGCGGCAGGCCGAGCGGCTGCTGCAGGAAGAGG  674

seq1  AGGAGCGCCGCCGTAGCCAGCACAAGGAGCTGCAGCAGGCTCTGGAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCGCCGCCGTAGCCAGCACAAGGAGCTGCAGCAGGCTCTGGAGGGC  724

seq1  CAGCTGCGGGAGGCGGAGCAGGTGAGACTGGCCCAGAGGGCGGGGCCGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCGGGAGGCGGAGCAGGTGAGACTGGCCCAGAGGGCGGGGCCGGG  774

seq1  GAAGGGTTGGGGCGGGGTTATGACCGGGGCGTGACAGGAAGAAGAGCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTGGGGCGGGGTTATGACCGGGGCGTGACAGGAAGAAGAGCAGG  824

seq1  GCGTAGTCCATGGTCTGGAGGATGCTATGGGCGGGGCCTAGATAGGGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGTCCATGGTCTGGAGGATGCTATGGGCGGGGCCTAGATAGGGTGG  874

seq1  AGCCCATTGGCTGAAGGATGGACCTAAGGTAGAGACTGAAAGATGCTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATTGGCTGAAGGATGGACCTAAGGTAGAGACTGAAAGATGCTGTG  924

seq1  GGCGGGGCCTGAGGGGCCCTTAGGGGAATAGGTTGGAGTAGAGCCTGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGCCTGAGGGGCCCTTAGGGGAATAGGTTGGAGTAGAGCCTGGAT  974

seq1  GCTTTGGGCATGGCCTAACGAATGTTAGGGTAGGGCCGGAACAAGGTTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGCATGGCCTAACGAATGTTAGGGTAGGGCCGGAACAAGGTTAG  1024

seq1  GGCTAGGGAAAACCCCTGGTAGAATGAGACCTGGTTCAGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGGAAAACCCCTGGTAGAATGAGACCTGGTTCAGAATTC  1068