BAC Information

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BAC

Clone NameB6Ng01-033D20
Chromosome17 (Build37)
Map Location 54,838,993 - 54,970,422
singlet/doubletdoublet
Overlap genenone
Upstream geneEG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
Downstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033D20.bB6Ng01-033D20.g
ACCDH862348DH862349
length89076
definitionDH862348|Mus musculus domesticus DNA, BAC clone: B6Ng01-033D20, 5' end.DH862349|Mus musculus domesticus DNA, BAC clone: B6Ng01-033D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,969,533 - 54,970,422)(54,838,993 - 54,839,068)
sequence
gaattcaaggtccattcctaaacataataaaagcaatatacagcaaacca
acagccaatatcaaattaaatggatacttgaagcaatccaacttaaatca
ggaacaagacaaagaagcccattctatttatatctatttcctttaacttt
taaaaacaaattgtatgtgtatgatgttggaaaatgggtggcacacttgt
tatttttgtttctctgtctctctatctctctgcctcttggtctgtctgtc
tctctatgtgtgtgtttttgtgtgtgttaggtacatacttgccacggctg
tatgcatgtatggtatgtatgtgtgtttctgtgtgtaggcatatgcttgc
catgactgtgtacacgtatgaaatgtatgtgtctctctgtgaaggtgttg
gtgcatgaatgtgtacatatatgatatgtgtgcgtctgcgtgtaggtact
tgttttctgtggctatgtgtacatatagtacatgtgtgtctctctatgtg
agtgcatacttccaacacatacatatgatggttataggaagagtttctag
agttctactctttacctagtattatggaacagttctattgtttctgcccc
tctgtttactttacatccagaccttgtcaaaaattatcttttacaccttc
catatgactataaaaaagctaagattactaatatgtgtaattattttgac
ctttttacatgggttctgagtattcaactcaggccaaagtgtgtttatcc
tcagatatttcatagatcctgtatatctttttgactaacagactcatgct
cccaagtatcttctaagcctagtttattttgaaaaatagtctgttattct
ttaattaaatttctataatttatatgtatggatattcacc
attttttgttgttcatatgtacagtgcttatgcctgacttttgggatttg
ataacttaatggagggggggggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_54969533_54970422
seq2: B6Ng01-033D20.b_45_934 (reverse)

seq1  GGTGAAATATCCATACATATAAAATAATAGAAATTTAAATAAAGACTAAC  50
      |||| ||||||||||||||| |||| |||||||||||| |||||| ||||
seq2  GGTG-AATATCCATACATAT-AAATTATAGAAATTTAATTAAAGAATAAC  48

seq1  AGACTATTTTTC-AAATAAACTAGGCTTAGAAGATACTTGGGAGCATGAG  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGACTATTTTTCAAAATAAACTAGGCTTAGAAGATACTTGGGAGCATGAG  98

seq1  TCTGTTAGTCAAAAAGATATACAGGATCTATGAAATATCTGAGGATAAAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAGTCAAAAAGATATACAGGATCTATGAAATATCTGAGGATAAAC  148

seq1  ACAC-TTGGCCTGAGTTGAATACTCAGAACCCATGTAAAAAGGTCAAAAT  198
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGGCCTGAGTTGAATACTCAGAACCCATGTAAAAAGGTCAAAAT  198

seq1  AATTACACATATTAGTAATCTTAGCTTTTTTATAGTCATATGGAAGGTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACATATTAGTAATCTTAGCTTTTTTATAGTCATATGGAAGGTGT  248

seq1  AAAAGATAATTTTTGACAAGGTCTGGATGTAAAGTAAACAGAGGGGCAGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAATTTTTGACAAGGTCTGGATGTAAAGTAAACAGAGGGGCAGA  298

seq1  AACAATAGAACTGTTCCATAATACTAGGTAAAGAGTAGAACTCTAGAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGAACTGTTCCATAATACTAGGTAAAGAGTAGAACTCTAGAAAC  348

seq1  TCTTCCTATAACCATCATATGTATGTGTTGGAAGTATGCACTCACATAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTATAACCATCATATGTATGTGTTGGAAGTATGCACTCACATAGA  398

seq1  GAGACACACATGTACTATATGTACACATAGCCACAGAAAACAAGTACCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACACATGTACTATATGTACACATAGCCACAGAAAACAAGTACCTA  448

seq1  CACGCAGACGCACACATATCATATATGTACACATTCATGCACCAACACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAGACGCACACATATCATATATGTACACATTCATGCACCAACACCT  498

seq1  TCACAGAGAGACACATACATTTCATACGTGTACACAGTCATGGCAAGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGAGACACATACATTTCATACGTGTACACAGTCATGGCAAGCAT  548

seq1  ATGCCTACACACAGAAACACACATACATACCATACATGCATACAGCCGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTACACACAGAAACACACATACATACCATACATGCATACAGCCGTG  598

seq1  GCAAGTATGTACCTAACACACACAAAAACACACACATAGAGAGACAGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTATGTACCTAACACACACAAAAACACACACATAGAGAGACAGACA  648

seq1  GACCAAGAGGCAGAGAGATAGAGAGACAGAGAAACAAAAATAACAAGTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGAGGCAGAGAGATAGAGAGACAGAGAAACAAAAATAACAAGTGT  698

seq1  GCCACCCATTTTCCAACATCATACACATACAATTTGTTTTTAAAAGTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCATTTTCCAACATCATACACATACAATTTGTTTTTAAAAGTTAA  748

seq1  AGGAAATAGATATAAATAGAATGGGCTTCTTTGTCTTGTTCCTGATTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAGATATAAATAGAATGGGCTTCTTTGTCTTGTTCCTGATTTAA  798

seq1  GTTGGATTGCTTCAAGTATCCATTTAATTTGATATTGGCTGTTGGTTTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATTGCTTCAAGTATCCATTTAATTTGATATTGGCTGTTGGTTTGC  848

seq1  TGTATATTGCTTTTATTATGTTTAGGAATGGACCTTGAATTC  890
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTGCTTTTATTATGTTTAGGAATGGACCTTGAATTC  890

seq1: chr17_54838993_54839068
seq2: B6Ng01-033D20.g_73_148

seq1  ATTTTGTGTTGTTCATATGTACAGTGCTTATGCCTGACTTTTGGGATTTG  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTTGTTCATATGTACAGTGCTTATGCCTGACTTTTGGGATTTG  50

seq1  ATAACTTAATGGAGGGGGGGGGGGAA  76
      ||||||||||||||||||||||||||
seq2  ATAACTTAATGGAGGGGGGGGGGGAA  76