BAC Information

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BAC

Clone NameB6Ng01-033M13
Chromosome17 (Build37)
Map Location 34,532,200 - 34,650,316
singlet/doubletdoublet
Overlap geneBC051142, EG632126, Btnl5, LOC624681
Upstream gene1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442
Downstream geneBtnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033M13.bB6Ng01-033M13.g
ACCDH862739DH862740
length1,036742
definitionDH862739|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M13, 5' end.DH862740|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,532,200 - 34,533,259)(34,649,579 - 34,650,316)
sequence
gaattcacagaccagaccattttaaaatccgatatcaaatgtgaccccag
ggaaaggtaagggcatgtctccaggatctggtgggtcagtcagtcacatg
agctgctctagtctcaatagaggaagacacatcagatggacgtcttttca
tttttttttttttttatatttaacctaactcagaaaatgttccagagatt
tgtgaaaagcaactccaataaaggcaagaaccagacattatcaacctcaa
aaattcacagaaggatgaagtttgggccattttttttatgagaaatactt
gaggcagtcaccactactcatgactttaagagagagatcactgattgttt
cagagactaaattactcatctctgtgtttgagacaacacagactatagtg
aggagaatgggcttggtttttataaaaggcaaaagtggaaggaaaatgac
agtttcagaagccataagaatggtctatgtgaaagacgcagatggaaggg
cagaagacaggtctgtgggaggtggcaatgagatgaggcagtttggaagc
ttctgtgagtcctttgataacagagataacagctttgttggggctccgtt
ccaatgctttgatttaatccagcccccaaatcgggaagatgcatgttcaa
atgctgaaagcccttgtccccagttggtttctgatcaagaaagagccaac
agctgggcggtgatggtgcacgcctttaatcccagcacttgggaggcaga
ggcaggtggatttctgagtttgaggccagcctggtctacaaagtgggttc
caggacagccagggctatacagagaaaccctgtcttgaaaacaaaacaaa
caaaccaaaaaacaaaaaacaaaaccaaaaaaaaaaaaaaagaagaagag
ccacagccatgactgtgcaggagactgaggtaggactttagatttgccgg
gctaggactgggagaaaggaagaagatgattgctatgaactcagggagaa
ggtatgacgtaagagctgcagaagaaagacacagcc
gaattcaaacagataagaacctggatgcaggagctgcatcaaggagctgg
ctcccttagggtccagttgctcttgacttctgtctgcacctgggatcaga
ctgcagtgttaacatttctgcaaagaaagtgttttagttaggtttctatt
gctgtatgaaactaatgcattttggggagggaatggtttatttgttgtac
acattttcaaatcgcaatatattaatggggaaaaccagggcagaaactca
aggtagggacctagagtagggacctagatcaggaactgaagcagagacca
cagaggaaggctgcttccctgtttgctcccaatggctttctcaattgtct
tgatggcccactcctggaccacctgtgtaggtgtggaaccgtccacagtg
ggcaggccccttcttcatcaacccgtcaagaaaaccctgctgccttgcct
tcagctagtctataggagccattttctcagttgaagctccttcctgtcag
atgactttagcttttgaaaattgacaacatctaaccagcaaaagaggtca
cagatgcaggagtatgacctgcacccgttcctcagtcatcttccagggct
ctgctcccttagcatctgaaggtgttgatcaaggtgatgggtagagactt
gggttgcttccctcagtgggaaggagatgggaaatgttcgtgctcctggt
ttaagtgtacctggcttttggagtttgtttcagtttgaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34532200_34533259
seq2: B6Ng01-033M13.b_45_1080

seq1  GAATTCACAGACCAGACCATTTTAAAATCCGATATCAAATGTGACCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGACCAGACCATTTTAAAATCCGATATCAAATGTGACCCCAG  50

seq1  GGAAAGGTAAGGGCATGTCTCCAGGATCTGGTGGGTCAGTCAGTCACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTAAGGGCATGTCTCCAGGATCTGGTGGGTCAGTCAGTCACATG  100

seq1  AGCTGCTCTAGTCTCAATAGAGGAAGACACATCAGATGGACGTCTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCTAGTCTCAATAGAGGAAGACACATCAGATGGACGTCTTTTCA  150

seq1  TTTTTTTTTTTTTTTATATTTAACCTAACTCAGAAAATGTTCCAGAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTATATTTAACCTAACTCAGAAAATGTTCCAGAGATT  200

seq1  TGTGAAAAGCAACTCCAATAAAGGCAAGAACCAGACATTATCAACCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGCAACTCCAATAAAGGCAAGAACCAGACATTATCAACCTCAA  250

seq1  AAATTCACAGAAGGATGAAGTTTGGGCCATTTTTTTTATGAGAAATACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACAGAAGGATGAAGTTTGGGCCATTTTTTTTATGAGAAATACTT  300

seq1  GAGGCAGTCACCACTACTCATGACTTTAAGAGAGAGATCACTGATTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTCACCACTACTCATGACTTTAAGAGAGAGATCACTGATTGTTT  350

seq1  CAGAGACTAAATTACTCATCTCTGTGTTTGAGACAACACAGACTATAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTAAATTACTCATCTCTGTGTTTGAGACAACACAGACTATAGTG  400

seq1  AGGAGAATGGGCTTGGTTTTTATAAAAGGCAAAAGTGGAAGGAAAATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATGGGCTTGGTTTTTATAAAAGGCAAAAGTGGAAGGAAAATGAC  450

seq1  AGTTTCAGAAGCCATAAGAATGGTCTATGTGAAAGACGCAGATGGAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAAGCCATAAGAATGGTCTATGTGAAAGACGCAGATGGAAGGG  500

seq1  CAGAAGACAGGTCTGTGGGAGGTGGCAATGAGATGAGGCAGTTTGGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACAGGTCTGTGGGAGGTGGCAATGAGATGAGGCAGTTTGGAAGC  550

seq1  TTCTGTGAGTCCTTTGATAACAGAGATAACAGCTTTGTTGGGGCTCCGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGTCCTTTGATAACAGAGATAACAGCTTTGTTGGGGCTCCGTT  600

seq1  CCAATGCTTTGATTTAATCCAGCCCCCAAATCGGGAAGATGCATGTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTTTGATTTAATCCAGCCCCCAAATCGGGAAGATGCATGTTCAA  650

seq1  ATGCTGAAAGCCCTTGTCCCCAGTTGGTTTCTGATCAAGAAAGAGCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAAAGCCCTTGTCCCCAGTTGGTTTCTGATCAAGAAAGAGCCAAC  700

seq1  AGCTGGGCGGTGATGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCGGTGATGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGA  750

seq1  GGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGGGTTC  800

seq1  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAACAAAACAA  850
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTG-AAAACAAAAC-A  848

seq1  AACAAAACCAAAAAAACAAAAAAACAAAAAACCAAAAAAAAAAAAAAAAA  900
      ||||||  | ||||||||||||   | ||||||||||||||||||||| |
seq2  AACAAA--CCAAAAAACAAAAA---ACAAAACCAAAAAAAAAAAAAAAGA  893

seq1  AGAAAGAAAGAGCCAACAGCCAATGACTGTGCAGGGAGACTGAGGTAGGA  950
      ||     ||||||| |||||| ||||||||||| ||||||||||||||||
seq2  AG-----AAGAGCC-ACAGCC-ATGACTGTGCA-GGAGACTGAGGTAGGA  935

seq1  CCTTTAGATTTGCACGGGCTAGGGACTGGGAGAAAGGAAGACAGAGGATT  1000
       |||||||||||| ||||||| ||||||||||||||||||| ||| ||||
seq2  -CTTTAGATTTGC-CGGGCTA-GGACTGGGAGAAAGGAAGA-AGATGATT  981

seq1  GCTATG-ACTCAGGGGAGAAGGATAGGACGTAAGAGCTGCAGGAGAGAAA  1049
      |||||| ||||| ||||||||| || ||||||||||||||||   |||||
seq2  GCTATGAACTCA-GGGAGAAGG-TATGACGTAAGAGCTGCAG--AAGAAA  1027

seq1  GACAACCAGCC  1060
      ||||  |||||
seq2  GACA--CAGCC  1036

seq1: chr17_34649579_34650316
seq2: B6Ng01-033M13.g_67_808 (reverse)

seq1  TACCTC-AACTGAAAC-AACTCC-AAAGCCAGGTACACTTATACCAGGAG  47
      |||||| ||||||||| |||||| ||||||||||||||||| ||||||||
seq2  TACCTCAAACTGAAACAAACTCCAAAAGCCAGGTACACTTAAACCAGGAG  50

seq1  CACGAACA-TTCCCATCTCCTTCCCACTGAGGGAAGCAACCCAAGTCTCT  96
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACGAACATTTCCCATCTCCTTCCCACTGAGGGAAGCAACCCAAGTCTCT  100

seq1  ACCCATCACCTTGATCAACACCTTCAGATGCTAAGGGAGCAGAGCCCTGG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCACCTTGATCAACACCTTCAGATGCTAAGGGAGCAGAGCCCTGG  150

seq1  AAGATGACTGAGGAACGGGTGCAGGTCATACTCCTGCATCTGTGACCTCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACTGAGGAACGGGTGCAGGTCATACTCCTGCATCTGTGACCTCT  200

seq1  TTTGCTGGTTAGATGTTGTCAATTTTCAAAAGCTAAAGTCATCTGACAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGTTAGATGTTGTCAATTTTCAAAAGCTAAAGTCATCTGACAGG  250

seq1  AAGGAGCTTCAACTGAGAAAATGGCTCCTATAGACTAGCTGAAGGCAAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTTCAACTGAGAAAATGGCTCCTATAGACTAGCTGAAGGCAAGG  300

seq1  CAGCAGGGTTTTCTTGACGGGTTGATGAAGAAGGGGCCTGCCCACTGTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGTTTTCTTGACGGGTTGATGAAGAAGGGGCCTGCCCACTGTGG  350

seq1  ACGGTTCCACACCTACACAGGTGGTCCAGGAGTGGGCCATCAAGACAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTCCACACCTACACAGGTGGTCCAGGAGTGGGCCATCAAGACAATT  400

seq1  GAGAAAGCCATTGGGAGCAAACAGGGAAGCAGCCTTCCTCTGTGGTCTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCCATTGGGAGCAAACAGGGAAGCAGCCTTCCTCTGTGGTCTCT  450

seq1  GCTTCAGTTCCTGATCTAGGTCCCTACTCTAGGTCCCTACCTTGAGTTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTTCCTGATCTAGGTCCCTACTCTAGGTCCCTACCTTGAGTTTC  500

seq1  TGCCCTGGTTTTCCCCATTAATATATTGCGATTTGAAAATGTGTACAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGTTTTCCCCATTAATATATTGCGATTTGAAAATGTGTACAACA  550

seq1  AATAAACCATTCCCTCCCCAAAATGCATTAGTTTCATACAGCAATAGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCATTCCCTCCCCAAAATGCATTAGTTTCATACAGCAATAGAAA  600

seq1  CCTAACTAAAACACTTTCTTTGCAGAAATGTTAACACTGCAGTCTGATCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTAAAACACTTTCTTTGCAGAAATGTTAACACTGCAGTCTGATCC  650

seq1  CAGGTGCAGACAGAAGTCAAGAGCAACTGGACCCTAAGGGAGCCAGCTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCAGACAGAAGTCAAGAGCAACTGGACCCTAAGGGAGCCAGCTCC  700

seq1  TTGATGCAGCTCCTGCATCCAGGTTCTTATCTGTTTGAATTC  738
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCAGCTCCTGCATCCAGGTTCTTATCTGTTTGAATTC  742