BAC Information

Click to search

BAC

Clone NameB6Ng01-033M16
Chromosome17 (Build37)
Map Location 7,155,514 - 7,227,629
singlet/doubletdoublet
Overlap geneTagap1, Rnaset2b
Upstream geneTulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik
Downstream geneGm1604, Rps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033M16.bB6Ng01-033M16.g
ACCDH862745DH862746
length1,047987
definitionDH862745|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M16, 5' end.DH862746|Mus musculus domesticus DNA, BAC clone: B6Ng01-033M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,155,514 - 7,156,566)(7,226,631 - 7,227,629)
sequence
gaattcagcaggtaactaattaaaagccaagcaaattatcaggctgtcct
cattacagcccctgtccctttcagtcctggttgtggttctcaactccagt
ttttctcttcctacattaaaaaggctccaggtcaaagctttgtgcttgac
ttaaatgtcctgcacagaagttaacaaaatgttttgaagagggaaagcaa
caggaagttctgtactactttccgtgtttctcccctgcctaggattctag
tcctttaaaccctggatataccagccagtctccgtaatggggattttaac
acagcagacactatgctccatactttacatatgtaatttcatttagttgt
aatgatatcaattctaacattcccatttgtcaggcaaaactgaaatctga
aaggaccttagcaaggtcataagtagggcagtgacaggtaggattgaatg
ctcgtctgtttgatcccacccctgcacagtgtcagctcctggtgctcatg
gtctcagtcctgggacctcctggttcttacttcctttgcagtctcccttt
cctgcttctcattccccatatttcgataaccacacagtccagactccttt
tttttttttttacttcctcaatagttctttattctttttaatatgttcta
cttttagagataaagtgtccctatgtagctggcctcaaactcacaatcct
tctgcctcagcctcccaggtgccgggcctacaggtgtatgccaccacacc
tgggtcttctgcttttgcatctttccagcctttgcttgattgtcttgctc
ctttctgccttatggaaccacagaacgtcacgcctgagatggggctctga
ccatgcctgttccctcctccgataccacattgctcacaggttcagggccc
ttacactatacccagacagcactgttagcttcctgcctgccttctgacca
caggtgctggtatcactgcctggcagacttggcagcatctcctccatgct
gctcatggctcctcctcgggcctcttccaggttatttcggttgacat
gaattccatctgaataccagagaggatagatggcaggaaggagccaagtt
gctttggatgagtgttcaactgaatcccaagaaaacacaaatgctttgtt
caacacgaaggacacctccaaaatctcacttccaagaaacctgcctcgca
gataacaacactcttcagagaatccactttccagagtaaaggtgatggga
agccctgatggagtcccagccacaggatcatggtgacacagacagacaca
taggcatcaaacccagaggactccgcccccgaattctcagcacagatgag
aacaagagtacgaaggtgctgagacccctgaagtcttttctcacagaaag
gaaggaaggaggaggagcccgcccaccctctgcctccctcccagtgactg
aggaaagtggttctcccctggtgtggaaaggctttggagccccctgcaca
tcggctcctggcacttagtgctgtcccagcaatcatgaaagaagagcatg
ctgcacgagctgaggaaaaaggcctctgctaaagctaaggcacctggtgt
ctgaattaatgagatgctcctagccttcactctacccttgacagctggtt
tcacacagctcaggctctgtcctgtcttacttcatgttgcagttgaggta
tattaaggatttgtaaaataagacgtatgctcaattctattgggtgctct
cttgtgttgccagttctacattcatagaatttcctaaacacacagtcgct
cacacacacacacacacgcacacacacacatacatcacacaatttactca
cacaaacacacactcacacaatttacctacacactcacacaggcatacac
atgtcccaaatacactcacacaccattcacacacatacaaactctacctt
accccccacacatcacatttactcacaaacatcccatggacaaacatact
catacacattcaacactccccacatttcacaagcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_7155514_7156566
seq2: B6Ng01-033M16.b_47_1093

seq1  GAATTCAGCAGGTAACTAATTAAAAGCCAAGCAAATTATCAGGCTGTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGGTAACTAATTAAAAGCCAAGCAAATTATCAGGCTGTCCT  50

seq1  CATTACAGCCCCTGTCCCTTTCAGTCCTGGTTGTGGTTCTCAACTCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGCCCCTGTCCCTTTCAGTCCTGGTTGTGGTTCTCAACTCCAGT  100

seq1  TTTTCTCTTCCTACATTAAAAAGGCTCCAGGTCAAAGCTTTGTGCTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTCCTACATTAAAAAGGCTCCAGGTCAAAGCTTTGTGCTTGAC  150

seq1  TTAAATGTCCTGCACAGAAGTTAACAAAATGTTTTGAAGAGGGAAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTCCTGCACAGAAGTTAACAAAATGTTTTGAAGAGGGAAAGCAA  200

seq1  CAGGAAGTTCTGTACTACTTTCCGTGTTTCTCCCCTGCCTAGGATTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTTCTGTACTACTTTCCGTGTTTCTCCCCTGCCTAGGATTCTAG  250

seq1  TCCTTTAAACCCTGGATATACCAGCCAGTCTCCGTAATGGGGATTTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAACCCTGGATATACCAGCCAGTCTCCGTAATGGGGATTTTAAC  300

seq1  ACAGCAGACACTATGCTCCATACTTTACATATGTAATTTCATTTAGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGACACTATGCTCCATACTTTACATATGTAATTTCATTTAGTTGT  350

seq1  AATGATATCAATTCTAACATTCCCATTTGTCAGGCAAAACTGAAATCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATCAATTCTAACATTCCCATTTGTCAGGCAAAACTGAAATCTGA  400

seq1  AAGGACCTTAGCAAGGTCATAAGTAGGGCAGTGACAGGTAGGATTGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTTAGCAAGGTCATAAGTAGGGCAGTGACAGGTAGGATTGAATG  450

seq1  CTCGTCTGTTTGATCCCACCCCTGCACAGTGTCAGCTCCTGGTGCTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCTGTTTGATCCCACCCCTGCACAGTGTCAGCTCCTGGTGCTCATG  500

seq1  GTCTCAGTCCTGGGACCTCCTGGTTCTTACTTCCTTTGCAGTCTCCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTCCTGGGACCTCCTGGTTCTTACTTCCTTTGCAGTCTCCCTTT  550

seq1  CCTGCTTCTCATTCCCCATATTTCGATAACCACACAGTCCAGACTCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTCATTCCCCATATTTCGATAACCACACAGTCCAGACTCCTTT  600

seq1  TTTTTTTTTTTACTTCCTCAATAGTTCTTTATTCTTTTTAATATGTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTACTTCCTCAATAGTTCTTTATTCTTTTTAATATGTTCTA  650

seq1  CTTTTAGAGATAAAGTGTCCCTATGTAGCTGGCCTCAAACTCACAATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGAGATAAAGTGTCCCTATGTAGCTGGCCTCAAACTCACAATCCT  700

seq1  TCTGCCTCAGCCTCCCAGGTGCCGGGCCTACAGGTGTATGCCACCACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCAGCCTCCCAGGTGCCGGGCCTACAGGTGTATGCCACCACACC  750

seq1  TGGGTCTTCTGCTTTTGCATCTTTCCAGCCTTTGCTTGATTGTCTTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTCTGCTTTTGCATCTTTCCAGCCTTTGCTTGATTGTCTTGCTC  800

seq1  CTTTCTGCCTTATGGAACCACAGAACGTCACGCCTGAGATGGGGCTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCCTTATGGAACCACAGAACGTCACGCCTGAGATGGGGCTCTGA  850

seq1  CCATGCCTGTTCCCTCCTCCGATACCACATTGCTCACAGGTTCAGGGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTGTTCCCTCCTCCGATACCACATTGCTCACAGGTTCAGGGCCC  900

seq1  TTACACTATACCCCAGACAGCACTGTTAGCTTCCTGCCTGCCTTCTGACC  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTACACTATA-CCCAGACAGCACTGTTAGCTTCCTGCCTGCCTTCTGACC  949

seq1  ACAGGTGCT-GTAGCACTGCCTGGCAGACTTGGGCAGCATCTCCCTTCCA  999
      ||||||||| ||| ||||||||||||||||| ||||||||||||  ||||
seq2  ACAGGTGCTGGTATCACTGCCTGGCAGACTT-GGCAGCATCTCC--TCCA  996

seq1  TGCTGCTCAGTGCTTCCTCCTCGGTCCTTCTCCCAGGTTATTTTCTGTTG  1049
      ||||||||| ||  |||||||||| || ||| |||||||| |||| ||||
seq2  TGCTGCTCA-TGGCTCCTCCTCGGGCC-TCTTCCAGGTTA-TTTCGGTTG  1043

seq1  ACAT  1053
      ||||
seq2  ACAT  1047

seq1: chr17_7226631_7227629
seq2: B6Ng01-033M16.g_71_1057 (reverse)

seq1  TATGCTTGTGTAAATGTGTGTGAGTGTTTGTGATGTGTGTATGAGTATGT  50
      | |||||||| ||||||| | ||||||   |||  |||||||||||||||
seq2  TTTGCTTGTG-AAATGTG-GGGAGTGT---TGA-ATGTGTATGAGTATGT  44

seq1  TTGTACATGTGTATGTTTGTGAGTATATTTGTGATGTGTGGGGGGGTAAG  100
      |||| |||| | ||||||||||||| |  |||||||||| ||||||||||
seq2  TTGTCCATG-GGATGTTTGTGAGTAAA--TGTGATGTGT-GGGGGGTAAG  90

seq1  TGTATGAGTGTGTATGTGTGTGAATGTGTGTGTGAGTGTATTTGGGACAT  150
       ||| |||| |||||||||||||||| |||||||||||||||||||||||
seq2  -GTA-GAGTTTGTATGTGTGTGAATG-GTGTGTGAGTGTATTTGGGACAT  137

seq1  GTGTATGCATGTGTGAGTGTGTATGTGAATTGTGTGAGTGTGTGTTTGTG  200
      |||||||| |||||||||||||| || |||||||||||||||||||||||
seq2  GTGTATGCCTGTGTGAGTGTGTAGGTAAATTGTGTGAGTGTGTGTTTGTG  187

seq1  TGAGTAAATTGTGTGATGTATGTGTGTGTGTGCGTGTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAATTGTGTGATGTATGTGTGTGTGTGCGTGTGTGTGTGTGTGTG  237

seq1  AGCGACTGTGTGTTTAGG-AATTCTATGAATGTAGAACTGGCAACACAAG  299
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCGACTGTGTGTTTAGGAAATTCTATGAATGTAGAACTGGCAACACAAG  287

seq1  AGAGCACCCAATAGAATTGAGCATACGTCTTATTTTACAAATCCTTAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCCAATAGAATTGAGCATACGTCTTATTTTACAAATCCTTAATA  337

seq1  TACCTCAACTGCAACATGAAGTAAGACAGGACAGAGCCTGAGCTGTGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAACTGCAACATGAAGTAAGACAGGACAGAGCCTGAGCTGTGTGA  387

seq1  AACCAGCTGTCAAGGGTAGAGTGAAGGCTAGGAGCATCTCATTAATTCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTGTCAAGGGTAGAGTGAAGGCTAGGAGCATCTCATTAATTCAG  437

seq1  ACACCAGGTGCCTTAGCTTTAGCAGAGGCCTTTTTCCTCAGCTCGTGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGTGCCTTAGCTTTAGCAGAGGCCTTTTTCCTCAGCTCGTGCAG  487

seq1  CATGCTCTTCTTTCATGATTGCTGGGACAGCACTAAGTGCCAGGAGCCGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTTCTTTCATGATTGCTGGGACAGCACTAAGTGCCAGGAGCCGA  537

seq1  TGTGCAGGGGGCTCCAAAGCCTTTCCACACCAGGGGAGAACCACTTTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGGGGCTCCAAAGCCTTTCCACACCAGGGGAGAACCACTTTCCT  587

seq1  CAGTCACTGGGAGGGAGGCAGAGGGTGGGCGGGCTCCTCCTCCTTCCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACTGGGAGGGAGGCAGAGGGTGGGCGGGCTCCTCCTCCTTCCTTC  637

seq1  CTTTCTGTGAGAAAAGACTTCAGGGGTCTCAGCACCTTCGTACTCTTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGAGAAAAGACTTCAGGGGTCTCAGCACCTTCGTACTCTTGTT  687

seq1  CTCATCTGTGCTGAGAATTCGGGGGCGGAGTCCTCTGGGTTTGATGCCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGTGCTGAGAATTCGGGGGCGGAGTCCTCTGGGTTTGATGCCTA  737

seq1  TGTGTCTGTCTGTGTCACCATGATCCTGTGGCTGGGACTCCATCAGGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTCTGTGTCACCATGATCCTGTGGCTGGGACTCCATCAGGGCT  787

seq1  TCCCATCACCTTTACTCTGGAAAGTGGATTCTCTGAAGAGTGTTGTTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCACCTTTACTCTGGAAAGTGGATTCTCTGAAGAGTGTTGTTATC  837

seq1  TGCGAGGCAGGTTTCTTGGAAGTGAGATTTTGGAGGTGTCCTTCGTGTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGGCAGGTTTCTTGGAAGTGAGATTTTGGAGGTGTCCTTCGTGTTG  887

seq1  AACAAAGCATTTGTGTTTTCTTGGGATTCAGTTGAACACTCATCCAAAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCATTTGTGTTTTCTTGGGATTCAGTTGAACACTCATCCAAAGC  937

seq1  AACTTGGCTCCTTCCTGCCATCTATCCTCTCTGGTATTCAGATGGAATTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCTCCTTCCTGCCATCTATCCTCTCTGGTATTCAGATGGAATTC  987