BAC Information

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BAC

Clone NameB6Ng01-035G21
Chromosome17 (Build37)
Map Location 43,733,877 - 43,862,920
singlet/doubletdoublet
Overlap genePla2g7, Tdrd6, Slc25a27, Cyp39a1
Upstream geneOpn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332
Downstream geneDscr1l1, Enpp5, Enpp4, Clic5, Runx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035G21.bB6Ng01-035G21.g
ACCDH863893DH863894
length998762
definitionDH863893|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G21, 5' end.DH863894|Mus musculus domesticus DNA, BAC clone: B6Ng01-035G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,861,943 - 43,862,920)(43,733,877 - 43,734,619)
sequence
gaattccatttcagcggtagagtaagttaaagagctatggtacaccctgt
agtccctaacgttagagacaagtgtagtaactctgctagagtgcagaaat
attttcgcacaagaattgattaagtgtgtgaaacaatatacagattaatg
gctttatttggccattacaaaatgtacgcatatttcaaagcatgctgtat
agtatatatatataatttatatgcaattacaataaaatgaagaaaacaat
ctagaatacgtccgaacaaaacacatactttttttagaaagtttattatt
ttcccaacaaaaccagtacttaccagaattttaactggcttcactacctt
tctagtaatgacaccaggggctctcaagcggacagattccagaatgcacc
acttaattattagaagcttcttcaggtcatcttcagacactttaatcttg
tctttacctgtaaagagattttaaagattaaagaagagatgcgctagaga
gaccagaaggtagattcacgcaggctagtcaatgcaggataagctcaccg
acaaggaaagcaccgctgcgatgtattgattttgctgctttcctctgaca
agatgggactggcgttccacctagctggaaggagttctgttggctacagg
atagctaagagggtccctgtgttggaaaagggtttagttttttttgcact
ttacctttttcttggtcaaaatccctcatttgtgtttaaaggaattagca
agtacaaaagggaaaaaaaaacaagggccaggaaagtaaatggtttccca
aaaagtgccggggcatgctttagccactgggggaaccacaagcaacattt
tctttttcttttttaaatttttttttggggggggggggtttcgagacagg
tttctcctgggtatccttggctgtctctggaactcactttgtagaccagg
ctgtctcgactcagaaatcgctgcctctggctccgagtgctggatcaa
gaattctcctttgaggactggagaaaaatacccactcattgtcttttctc
atggtctcggagccttcaggtaatacttgggagactagacggtgttcgtc
ccaagctgtcactgactagatccacttctttaaaaaaaaaaaaatgcgat
tccagaatgtagtattggcccacgctgaacacttggttcctaagaactgg
ccatgtgactgctgggaagttgggggagtgtctacactaaaacgcactat
cattaactttgtaaccaaagtctggaaaatgatttgatttcagctgcact
ggtggttggcaactggggattcaagaaccagatctagtcagctatctcta
taaaaactttcatgaagcacagccccatccggtcagcttccacattgtca
atgactgtaacagccgagttgagatgttgtctttctcacaaagctgaggt
ggggcaggtctttcgaggctctgcagtagaccacctccccttccttgtgc
ctttcgggcagtaggtgtcagttcttagacagcccctttttgtatgccta
cattgacagtggaaatgcatgatgggagcaaagaggtaggcaaatggtcc
atgtggaaaggaggatggaagtgttttcttcaacacaagaacatttagct
ttcccgtccctgttttgatcttttccatagcagggaaacacgggtttaag
tagtccccctgaggtaaatagggtcaagccatgaagaaggtaaaccttcc
cccccccttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_43861943_43862920
seq2: B6Ng01-035G21.b_50_1047 (reverse)

seq1  TTGATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGG  50
      ||||| ||||||| | |||| |||||||||   |||||||||| |||| |
seq2  TTGAT-CCAGCAC-TCGGAGCCAGAGGCAG--CGATTTCTGAG-TCGA-G  44

seq1  CCAGCCTGGTCTACAAAGTGAGTTCCAG-GACAGCCAGGGATACACA-GA  98
       ||||||||||||||||||||||||||| |||||||| |||||| || ||
seq2  ACAGCCTGGTCTACAAAGTGAGTTCCAGAGACAGCCAAGGATACCCAGGA  94

seq1  GAAACCCTGTCTCGAAA-CACCCCCCCCCAAAAAAAAATTTAAAAAAG-A  146
      |||| |||||||||||| | |||||||||||||||||||||||||||| |
seq2  GAAA-CCTGTCTCGAAACCCCCCCCCCCCAAAAAAAAATTTAAAAAAGAA  143

seq1  AAAGAAAATGTTGCTTGTG--TTCCCCAGTGGCT-AAGCATG-CCCGGCA  192
      |||||||||||||||||||  | ||||||||||| ||||||| |||||||
seq2  AAAGAAAATGTTGCTTGTGGTTCCCCCAGTGGCTAAAGCATGCCCCGGCA  193

seq1  CTTTTTGG--AAACATTTACTTTCCTGGCC--TGTTTTATTT---CCTTT  235
      ||||||||  || |||||||||||||||||  |||||| |||   | |||
seq2  CTTTTTGGGAAACCATTTACTTTCCTGGCCCTTGTTTTTTTTTCCCTTTT  243

seq1  GTAC-TGCT-ATTTCTTTAAACAC-AATGA-GGATTTTGACAAGGAAGA-  280
      |||| |||| ||| |||||||||| ||||| |||||||||| | ||| | 
seq2  GTACTTGCTAATTCCTTTAAACACAAATGAGGGATTTTGACCAAGAAAAA  293

seq1  -GTGAAGTGC-AGAAAAACTAAACCCTTTTCC-ACACAGGGACCCTCTTA  327
       || |||||| | ||||||||||||||||||| |||||||||||||||||
seq2  GGTAAAGTGCAAAAAAAACTAAACCCTTTTCCAACACAGGGACCCTCTTA  343

seq1  GCTATCCTGTAGCC-ACAGGACT-CTTCCAGCTAGGTTGGACGCCAGT-C  374
      |||||||||||||| |||| ||| ||||||||||||| | |||||||| |
seq2  GCTATCCTGTAGCCAACAGAACTCCTTCCAGCTAGGTGGAACGCCAGTCC  393

seq1  CATCTTGTCAGA-GAAAGCAGCAAAATCAATACATCGCAGCGGTGCTTTC  423
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTCAGAGGAAAGCAGCAAAATCAATACATCGCAGCGGTGCTTTC  443

seq1  CTTGTCGGTGAGCTTATCCTGCATTGACTAGCCTGCGTGAATCTACCTTC  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCGGTGAGCTTATCCTGCATTGACTAGCCTGCGTGAATCTACCTTC  493

seq1  TGGTCTCTCTAGCGCATCTCTTCTTTAATCTTTAAAATCTCTTTACAGGT  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTCTAGCGCATCTCTTCTTTAATCTTTAAAATCTCTTTACAGGT  543

seq1  AAAGACAAGATTAAAGTGTCTGAAGATGACCTGAAGAAGCTTCTAATAAT  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAGATTAAAGTGTCTGAAGATGACCTGAAGAAGCTTCTAATAAT  593

seq1  TAAGTGGTGCATTCTGGAATCTGTCCGCTTGAGAGCCCCTGGTGTCATTA  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGTGCATTCTGGAATCTGTCCGCTTGAGAGCCCCTGGTGTCATTA  643

seq1  CTAGAAAGGTAGTGAAGCCAGTTAAAATTCTGGTAAGTACTGGTTTTGTT  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGGTAGTGAAGCCAGTTAAAATTCTGGTAAGTACTGGTTTTGTT  693

seq1  GGGAAAATAATAAACTTTCTAAAAAAAGTATGTGTTTTGTTCGGACGTAT  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATAATAAACTTTCTAAAAAAAGTATGTGTTTTGTTCGGACGTAT  743

seq1  TCTAGATTGTTTTCTTCATTTTATTGTAATTGCATATAAATTATATATAT  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTGTTTTCTTCATTTTATTGTAATTGCATATAAATTATATATAT  793

seq1  ATACTATACAGCATGCTTTGAAATATGCGTACATTTTGTAATGGCCAAAT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATACAGCATGCTTTGAAATATGCGTACATTTTGTAATGGCCAAAT  843

seq1  AAAGCCATTAATCTGTATATTGTTTCACACACTTAATCAATTCTTGTGCG  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTAATCTGTATATTGTTTCACACACTTAATCAATTCTTGTGCG  893

seq1  AAAATATTTCTGCACTCTAGCAGAGTTACTACACTTGTCTCTAACGTTAG  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTCTGCACTCTAGCAGAGTTACTACACTTGTCTCTAACGTTAG  943

seq1  GGACTACAGGGTGTACCATAGCTCTTTAACTTACTCTACCGCTGAAATGG  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACAGGGTGTACCATAGCTCTTTAACTTACTCTACCGCTGAAATGG  993

seq1  AATTC  978
      |||||
seq2  AATTC  998

seq1: chr17_43733877_43734619
seq2: B6Ng01-035G21.g_65_826

seq1  GAATTCTCCTTTGAGGACTGGAGAAAAATACCCACTCATTGTCTTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTGAGGACTGGAGAAAAATACCCACTCATTGTCTTTTCTC  50

seq1  ATGGTCTCGGAGCCTTCAGGTAATACTTGGGAGACTAGACGGTGTTCGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCGGAGCCTTCAGGTAATACTTGGGAGACTAGACGGTGTTCGTC  100

seq1  CCAAGCTGTCACTGACTAGATCCACTTCTTTAAAAAAAAAAAAATGCGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGTCACTGACTAGATCCACTTCTTTAAAAAAAAAAAAATGCGAT  150

seq1  TCCAGAATGTAGTATTGGCCCACGCTGAACACTTGGTTCCTAAGAACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATGTAGTATTGGCCCACGCTGAACACTTGGTTCCTAAGAACTGG  200

seq1  CCATGTGACTGCTGGGAAGTTGGGGGAGTGTCTACACTAAAACGCACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGACTGCTGGGAAGTTGGGGGAGTGTCTACACTAAAACGCACTAT  250

seq1  CATTAACTTTGTAACCAAAGTCTGGAAAATGATTTGATTTCAGCTGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTTTGTAACCAAAGTCTGGAAAATGATTTGATTTCAGCTGCACT  300

seq1  GGTGGTTGGCAACTGGGGATTCAAGAACCAGATCTAGTCAGCTATCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTGGCAACTGGGGATTCAAGAACCAGATCTAGTCAGCTATCTCTA  350

seq1  TAAAAACTTTCATGAAGCACAGCCCCATCCGGTCAGCTTCCACATTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTTTCATGAAGCACAGCCCCATCCGGTCAGCTTCCACATTGTCA  400

seq1  ATGACTGTAACAGCCGAGTTGAGATGTTGTCTTTCTCACAAAGCTGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTAACAGCCGAGTTGAGATGTTGTCTTTCTCACAAAGCTGAGGT  450

seq1  -GGGCAGGTC-TTCGAGGCTCTGCAGTAGACCACCT-CCCTTCC-TGTGC  496
       ||||||||| ||||||||||||||||||||||||| ||||||| |||||
seq2  GGGGCAGGTCTTTCGAGGCTCTGCAGTAGACCACCTCCCCTTCCTTGTGC  500

seq1  CTT--CGGCAGTAGGTGTCAGTTCTTAGACAGCCC--TTTTGTATGCCTA  542
      |||   |||||||||||||||||||||||||||||  |||||||||||||
seq2  CTTTCGGGCAGTAGGTGTCAGTTCTTAGACAGCCCCTTTTTGTATGCCTA  550

seq1  CATTGACAGTGG-AATGCATGATGGGAGC-AAGAGGTAGGCAA--TGTCC  588
      |||||||||||| |||||||||||||||| |||||||||||||   ||||
seq2  CATTGACAGTGGAAATGCATGATGGGAGCAAAGAGGTAGGCAAATGGTCC  600

seq1  ATGTGG-AATGAGGATGGATGTG-TATCTTCAACACAAGATCATTTAGC-  635
      |||||| || ||||||||| ||| | |||||||||||||| |||||||| 
seq2  ATGTGGAAAGGAGGATGGAAGTGTTTTCTTCAACACAAGAACATTTAGCT  650

seq1  TTCCGCTCACTG-TTTGATCATTTCCATAGCA-GGAAGCACGTG-TTAAG  682
      ||||  || ||| ||||||| ||||||||||| |||| |||| | |||||
seq2  TTCCCGTCCCTGTTTTGATCTTTTCCATAGCAGGGAAACACGGGTTTAAG  700

seq1  TAGTCACACTGATGTAAATAGGTTCAAGCCACTGAAG-ATGTAGACACT-  730
      ||||| | |||| ||||||||| |||||||| ||||| | ||| ||  | 
seq2  TAGTCCCCCTGAGGTAAATAGGGTCAAGCCA-TGAAGAAGGTAAACCTTC  749

seq1  CACCCCCCTTCAG  743
      | |||||||||||
seq2  CCCCCCCCTTCAG  762