BAC Information

Click to search

BAC

Clone NameB6Ng01-035J01
Chromosome17 (Build37)
Map Location 47,311,627 - 47,424,949
singlet/doubletdoublet
Overlap genenone
Upstream genePolh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035J01.bB6Ng01-035J01.g
ACCDH863995DH863996
length867648
definitionDH863995|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J01, 5' end.DH863996|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,311,627 - 47,312,507)(47,424,303 - 47,424,949)
sequence
gaattcatcttgtgatttatagcattttttaaaaagtcattaaaaagaaa
acagtactgcaaagcgaccaaactttgatgtagacttcttcctggcaggc
atcctagggacagctgggagctggtgttcctcctcctgtgtgggcgggca
aagctcgggctgtccacgcaggcgattggtgggcgtcgatgggctgcaac
ttcttatctacttcctggcccatcctcgctgtccgcacaggggctgtggc
tgggggcctctctctccactgcagagggaaatgcatactgattgtatttc
aaggtgggaaggatattagggaccttcgcattcgcttgactataagccga
gccctgaagaggtcacgtgacttggctccattttttttttccccctacag
cctaaacctgggacctgattctttgtcaagagctatgggaagtagttgtt
agggaacaaggaagtgtcccttttttcttgttgttgttgagacagcatgt
agcccaggccagtctcaagctctctatgtagtcaaggatgactttgaatt
cggatccttacaccgccacatgaaggcgctaccacgcccaactttaagag
gtgctggtgttgaacctagggctttatgcatgccaggaaaactcccaatc
aactgagccacatccccagtgctgaagtgttatgtttaattctaatttca
gaagaccctttcaacgtgaagttaagcttacagagaattagataatttac
ccctggttggaaagatcaggggcctctgcttaagtgaggtgggcgattgg
agggagtgctagctgcttgtggaggatagatatgtcccttctatcgttag
tctaccccactgcagag
gaattcacttctgtcaaacgttttgtcacaacaggaaagtaactaatgtt
ctctcccatgccatttctgatctgaggttcctcttgacctctgtgaggga
tacgggtctgtctagcattagctgggagtcccagaccacagactaatctt
agcaattccattctatcccagagattctttgtaaaggtttgtttattttt
ctgtggggtgtatgtgtgcttgcacgcatggatgtatgcgcgtcatgtgt
ctgcagtgctagggaggccaaaggagggttcagagctttctggaactgga
gttacagacggctggcagccgctgggaggtgctcaaaacctaactcgagc
tctttgtaggcttatctgatactctgaatggctgtcaccgtgtaagagat
tcattcattcaaaatcccccaagagaccccagcacagacctgggtccaga
atgcccaagtccttttctgccctgccctggccgtttaaacaccagaatga
ggaaggcttgccttattaggctaacacacttcctatgtgtgtgtgtgtct
gtgtgtgtgtgcatgagatcagctgggtgtgcacgcgtggcgtgtaaatg
gtcagagacaaccttggggtgtcatttgtcagatgtcttctacctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47311627_47312507
seq2: B6Ng01-035J01.b_43_909

seq1  GAATTCATCTTGTGATTTATAGCATTTTTTAAAAAGTCATTAAAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGTGATTTATAGCATTTTTTAAAAAGTCATTAAAAAGAAA  50

seq1  ACAGTACTGCAAAGCGACCAAACTTTGATGTAGACTTCTTCCTGGCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTGCAAAGCGACCAAACTTTGATGTAGACTTCTTCCTGGCAGGC  100

seq1  ATCCTAGGGACAGCTGGGAGCTGGTGTTCCTCCTCCTGTGTGGGCGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGGACAGCTGGGAGCTGGTGTTCCTCCTCCTGTGTGGGCGGGCA  150

seq1  AAGCTCGGGCTGTCCACGCAGGCGATTGGTGGGCGTCGATGGGCTGCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCGGGCTGTCCACGCAGGCGATTGGTGGGCGTCGATGGGCTGCAAC  200

seq1  TTCTTATCTACTTCCTGGCCCATCCTCGCTGTCCGCACAGGGGCTGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATCTACTTCCTGGCCCATCCTCGCTGTCCGCACAGGGGCTGTGGC  250

seq1  TGGGGGCCTCTCTCTCCACTGCAGAGGGAAATGCATACTGATTGTATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCCTCTCTCTCCACTGCAGAGGGAAATGCATACTGATTGTATTTC  300

seq1  AAGGTGGGAAGGATATTAGGGACCTTCGCATTCGCTTGACTATAAGCCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGAAGGATATTAGGGACCTTCGCATTCGCTTGACTATAAGCCGA  350

seq1  GCCCTGAAGAGGTCACGTGACTTGGCTCCATTTTTTTTTTCCCCCTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAGAGGTCACGTGACTTGGCTCCATTTTTTTTTTCCCCCTACAG  400

seq1  CCTAAACCTGGGACCTGATTCTTTGTCAAGAGCTATGGGAAGTAGTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACCTGGGACCTGATTCTTTGTCAAGAGCTATGGGAAGTAGTTGTT  450

seq1  AGGGAACAAGGAAGTGTCCCTTTTTTCTTGTTGTTGTTGAGACAGCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAAGGAAGTGTCCCTTTTTTCTTGTTGTTGTTGAGACAGCATGT  500

seq1  AGCCCAGGCCAGTCTCAAGCTCTCTATGTAGTCAAGGATGACTTTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGCCAGTCTCAAGCTCTCTATGTAGTCAAGGATGACTTTGAATT  550

seq1  CGGATCCTTACACCGCCACATGAAGGCGCTACCACGCCCAACTTTAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCCTTACACCGCCACATGAAGGCGCTACCACGCCCAACTTTAAGAG  600

seq1  GTGCTGGTGTTGAACCTAGGGCTTTATGCATGCCAGGAAAACTCCCAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGTGTTGAACCTAGGGCTTTATGCATGCCAGGAAAACTCCCAATC  650

seq1  AACTGAGCCACATCCCCAGTGCTGAAGTGTTATGTTTAATTCTAATTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCCACATCCCCAGTGCTGAAGTGTTATGTTTAATTCTAATTTCA  700

seq1  GAAGACCC-TTCAACGTGAAGTTAAGGCTTTTACAGAGAATTAGATAATT  749
      |||||||| |||||||||||||||||    ||||||||||||||||||||
seq2  GAAGACCCTTTCAACGTGAAGTTAAG---CTTACAGAGAATTAGATAATT  747

seq1  TACCCCTGGTTGGAAAGATCAGGGGCCTCTGCTTTAAAGTGAAGTGGGCG  799
      ||||||||||||||||||||||||||||||||||  |||||| |||||||
seq2  TACCCCTGGTTGGAAAGATCAGGGGCCTCTGCTT--AAGTGAGGTGGGCG  795

seq1  ATTTGGAGTGAGTGTCTAGCCTGGCTTGTGGAGGATAGATTAATTGTCCC  849
      | |||||| ||||| |||||   |||||||||||||||||    ||||||
seq2  A-TTGGAGGGAGTG-CTAGC--TGCTTGTGGAGGATAGAT---ATGTCCC  838

seq1  TTCGTATCGTTTAGTCAACCCCACTGCGAGAG  881
      ||| ||||| |||||| |||||||||| ||||
seq2  TTC-TATCG-TTAGTCTACCCCACTGC-AGAG  867

seq1: chr17_47424303_47424949
seq2: B6Ng01-035J01.g_70_717 (reverse)

seq1  AAAAGGTAGAAGACATCTGACAAATGACA-CCCAAGGTTGTCTCTGACCA  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAGGTAGAAGACATCTGACAAATGACACCCCAAGGTTGTCTCTGACCA  50

seq1  TTTACACGCCACGCGTGCACACCCAGCTGATCTCATGCACACACACACAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACGCCACGCGTGCACACCCAGCTGATCTCATGCACACACACACAG  100

seq1  ACACACACACACATAGGAAGTGTGTTAGCCTAATAAGGCAAGCCTTCCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACATAGGAAGTGTGTTAGCCTAATAAGGCAAGCCTTCCTC  150

seq1  ATTCTGGTGTTTAAACGGCCAGGGCAGGGCAGAAAAGGACTTGGGCATTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTGTTTAAACGGCCAGGGCAGGGCAGAAAAGGACTTGGGCATTC  200

seq1  TGGACCCAGGTCTGTGCTGGGGTCTCTTGGGGGATTTTGAATGAATGAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCAGGTCTGTGCTGGGGTCTCTTGGGGGATTTTGAATGAATGAAT  250

seq1  CTCTTACACGGTGACAGCCATTCAGAGTATCAGATAAGCCTACAAAGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACACGGTGACAGCCATTCAGAGTATCAGATAAGCCTACAAAGAGC  300

seq1  TCGAGTTAGGTTTTGAGCACCTCCCAGCGGCTGCCAGCCGTCTGTAACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTTAGGTTTTGAGCACCTCCCAGCGGCTGCCAGCCGTCTGTAACTC  350

seq1  CAGTTCCAGAAAGCTCTGAACCCTCCTTTGGCCTCCCTAGCACTGCAGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAGAAAGCTCTGAACCCTCCTTTGGCCTCCCTAGCACTGCAGAC  400

seq1  ACATGACGCGCATACATCCATGCGTGCAAGCACACATACACCCCACAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACGCGCATACATCCATGCGTGCAAGCACACATACACCCCACAGAA  450

seq1  AAATAAACAAACCTTTACAAAGAATCTCTGGGATAGAATGGAATTGCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAAACCTTTACAAAGAATCTCTGGGATAGAATGGAATTGCTAA  500

seq1  GATTAGTCTGTGGTCTGGGACTCCCAGCTAATGCTAGACAGACCCGTATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTCTGTGGTCTGGGACTCCCAGCTAATGCTAGACAGACCCGTATC  550

seq1  CCTCACAGAGGTCAAGAGGAACCTCAGATCAGAAATGGCATGGGAGAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGAGGTCAAGAGGAACCTCAGATCAGAAATGGCATGGGAGAGAA  600

seq1  CATTAGTTACTTTCCTGTTGTGACAAAACGTTTGACAGAAGTGAATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTTACTTTCCTGTTGTGACAAAACGTTTGACAGAAGTGAATTC  648